|
|
| Line 17: |
Line 17: |
|
| |
|
| Prokaryotic DNA polymerases:<br /> | | Prokaryotic DNA polymerases:<br /> |
| * '''DNA polymerase I''': involved in excision repair. Major polymerase in E. coli.<br /> | | * '''DNA polymerase I''': involved in excision repair. Major polymerase in ''E. coli''. For more details see [[DNA Polymerase I]]<br /> |
| * '''DNA polymerase II''': active in replication forks.<br /> | | * '''DNA polymerase II''': active in replication forks.<br /> |
| * '''DNA polymerase III''': involved in DNA replication.<br /> | | * '''DNA polymerase III''': involved in DNA replication. For more details see [[Polymerase III homoenzyme beta subunit]] and [[Alpha Subunit of Thermus aquaticus DNA Polymerase III]].<br /> |
| * '''DNA polymerase IV''': involved in non-targeted mutagenesis.<br /> | | * '''DNA polymerase IV''': involved in non-targeted mutagenesis.<br /> |
| * '''DNA polymerase V''': involved in translesion synthesis.<br /> | | * '''DNA polymerase V''': involved in translesion synthesis.<br /> |
| Line 27: |
Line 27: |
| * '''Rev1''' is a '''Dpo''' involved in replication over DNA lesions. <br /> | | * '''Rev1''' is a '''Dpo''' involved in replication over DNA lesions. <br /> |
| * '''Terminal deoxynucleotidyl transferase (TdT)''' is a family X Dpo expressed in immature lymphoid cells. TdT adds nucleotides to exons during antibody gene recombination.<br /> | | * '''Terminal deoxynucleotidyl transferase (TdT)''' is a family X Dpo expressed in immature lymphoid cells. TdT adds nucleotides to exons during antibody gene recombination.<br /> |
| For more details see<br />
| | See also [[User:Karl E. Zahn/RB69 DNA polymerase (gp43)]]<br /> |
| * [[DNA Polymerase I]]<br />
| |
| * [[Polymerase III homoenzyme beta subunit]]<br />
| |
| * [[User:Karl E. Zahn/RB69 DNA polymerase (gp43)]]<br />
| |
| * [[Alpha Subunit of Thermus aquaticus DNA Polymerase III]].
| |
|
| |
|
| == 3D Structures of DNA polymerase == | | == 3D Structures of DNA polymerase == |
Template:STRUCTURE 1taq
DNA polymerase (Dpo) reads a DNA strand and catalyzes the synthesis of its complementary strand. Dpo's are divided into 7 families according to their sequence homology and 3D structure similarities.[1] The families are:
- Family A - replicative or repair Dpo.
- Family B - replicative Dpo involved in processing DNA replication during cell division (includes eukaryotic Dpo α,δ,ε).
- Family C - major replicative Dpo in bacteria (includes Dpo II, III, IV).
- Family D - replicative. Present in archaea.
- Family X - eukaryotic repair Dpo (includes Dpo β,λ,σ,μ and terminal deoxynucleotidyl transferase).
- Family Y - replicative of damaged DNA (includes eukaryotic η,ι,κ).
- Family RT - reverse transcriptase. See Reverse transcriptase.
Some Dpo terminology:
Dpo sliding clamp is made of the complex of Dpo and Proliferating Cell Nuclear Antigen (PCNA) which encircles it.
The BRCT domain in Dpo is the C-terminal domain of breast cancer susceptibility protein.
Klenow fragment is a large Dpo fragment produced upon cleavage of Dpo by subtilisin.
In the E. coli, the EcDpo III subunits β, γ, δ, δ' are named clamp loader. This complex assembles the β subunit sliding clamp unto the DNA.
Prokaryotic DNA polymerases:
Eukaryotic DNA polymerases:
- Pol α,β,γ,δ,ε,ζ,η,ι,κ
- Rev1 is a Dpo involved in replication over DNA lesions.
- Terminal deoxynucleotidyl transferase (TdT) is a family X Dpo expressed in immature lymphoid cells. TdT adds nucleotides to exons during antibody gene recombination.
See also User:Karl E. Zahn/RB69 DNA polymerase (gp43)
3D Structures of DNA polymerase3D Structures of DNA polymerase
Updated on 31-December-2015
{"openlevels":0}
- DNA polymerase I
- 1taq – TaDpo I - Thermus aquaticus
- 1jxe – TaDpo I Stoffel fragment
- 1ktq - TaDpo I klenow fragment
- 5ktq – TaDpo I + nucleotide
- 3ojs, 3oju, 1tau, 4dle, 4dlg, 4elt, 4elu, 4elv - TaDpo I + DNA
- 4flt, 4flu, 4flv, 4flw, 4flx, 4fly, 4flz, 4fm0, 4fm1, 4fm2 – Dpo I + DNA – Pyrococcus abyssi
- 1s5j – SsDpo I - Sulfolobus solfataricus
- 3eyz - GsDpo I (mutant) + DNA - Geobacillus stearothermophilus
- 3ez5 - GsDpo I (mutant) + DNA + nucleotide
- 3pv8, 3px0, 3px4, 3px6, 4dqi, 4dqp, 4dqq, 4dqr, 4dqs, 4ds4, 4ds5, 4dse, 4dsf, 4e0d, 4ez6, 4ez9, 4f2r, 4f2s, 4f3o, 4f4k, 4f8r - GkDpo I (mutant) + DNA – Geobacillus kaustophilus
- DNA polymerase I klenow fragment
- 2kzz, 1d8y, 2kzm – EcDpo I - Escherichia coli
- 1qsl - EcDpo I + DNA
- 1kfs, 1krp, 1ksp, 1kln - EcDpo I (mutant) + DNA
- 1kfd, 1dpi - EcDpo I + nucleotide
- 1d9d, 1d9f, 2kfn - EcDpo I + DNA + nucleotide
- 2kfz - EcDpo I (mutant) + DNA + nucleotide
- 1ktq - TaDpo I
- 3po4, 3po5, 3rtv, 3sv3, 3sv4, 3syz, 3sz2, 4c8k, 4c8l, 4c8m, 4c8n, 4c8o, 4cch - TaDpo I + DNA
- 4bwm, 4bwj - TaDpo I + DNA + RNA
- 3py8 - TaDpo I (mutant) + DNA
- 3m8r, 3m8s, 3lwl, 3lwm, 1qss, 1qsy, 1qtm, 2ktq, 3ktq, 4ktq, 3rr7, 3rr8, 3rrg, 3rrh, 3t3f, 4df4, 4df8, 4dfj, 4dfk, 4dfm, 4dfp - TaDpo I + DNA + nucleotide
- 4n56, 4n5s, 4xiu - TaDpo I (mutant) + DNA + nucleotide
- 1xwl - GsDpo I
- 2xo7, 3hp6, 3hpo, 2hhq, 2hhs, 2hht, 2hhu, 2hhv, 2hhw, 2hhx, 2hvh, 2hvi, 2hw3, 1xc9, 1ua0, 1ua1, 1njw, 1njx, 1njy, 1njz, 1nk0, 1nk4, 1nk5, 1nk6, 1nk7, 1nk8, 1nk9, 1nkb, 1nkc, 1nke, 1l3s, 2bdp, 4bdp, 2xy5, 2xy6, 2xy7, 2y1i, 2y1j, 3tan, 3tap, 3taq, 3tar, 3thv, 4b9l, 4b9m, 4b9n, 4b9s, 4b9t, 4b9u, 4b9v - GsDpo I + DNA
- 4dsi, 4dsj, 4dsk, 4dsl, 4dwi - GsDpo I (mutant) + DNA
- 3ht3, 1u45, 1u47, 1u48, 1u49, 1u4b, 1l3t, 1l3u, 1l3v, 1l5u, 1lv5, 3bdp, 3ti0, 4o0i, 4uqg - GsDpo I + DNA + nucleotide
- DNA polymerase II
- 3maq, 3k57, 3k58, 3k59, 3k5l, 3k5m - EcDpo II (mutant) + DNA + nucleotide
- 3k5n - EcDpo II (mutant) + DNA
- 3k5o, 1q8i - EcDpo II (mutant)
- 3o59 - PhDpo II large subunit]] - Pyrococcus horikoshii
- 2kxe - PhDpo II small subunit
- 1qqc – DeDpo II – Desulfurococcus
- DNA polymerase III subunit alpha
- 2hnh, 2hqa - EcDpo III subunit α catalytic fragment
- 4jom - EcDpo III α subunit catalytic fragment (mutant)
- 2hpi, 2hpm - TaDpo III α subunit
- 3e0d - TaDpo III α subunit + DNA
- 3f2b, 3f2c, 3f2d, 4iqj – GkDpo III α subunit + DNA + nucleotide
- 1zd7, 1zde, 3nzm - SyDpo III α subunit – Synechocystis
- 4gig - SyDpo III α subunit (mutant)
- 2keq, 4kl5, 4kl6 - NpDpo III α subunit – Nostoc punctiforme
- 4lx3 - NpDpo III α subunit + nucleic acid binding tRNA/helicase
- 1ok7 - EcDpo III residues 1-366 + EcDpo IV C-terminal
- DNA polymerase III subunit beta
- mmi, 2pol, 4k3s, 4pnv, 4pnw - EcDpo III subunit β
- 2xur, 3f1v, 3pwe - EcDpo III subunit β (mutant)
- 3d1e - EcDpo III subunit β + EcDpo II C-terminal
- 1unn - EcDpo III subunit β + EcDpo IV little finger
- 3d1g, 3qsb, 4k3k, 4k3l, 4mjp, 4mjq, 4mjr, 4n94, 4n95, 4n96, 4n97, 4n98, 4n99, 4n9a, 4ovf, 4ovg, 4ovh, 4pnu - EcDpo III subunit β + inhibitor
- 3bep - EcDpo III subunit β + DNA
- 3d1f, 3q4j, 3q4k, 3q4l, 4k3l, 4k3m, 4k3o, 4k3p, 4k3q, 4k3r, 4k74 - EcDpo III β subunit + polypeptide
- 2avt - Dpo III β subunit – Streptococcus pyogenes
- 2awa - Dpo III β subunit – Streptococcus pneumoniae
- 2p1j – TmDpo III exonuclease domain – Thermotoga maritima
- 1vpk - TmDpo III β subunit
- 4k3s - EcDpo III β subunit
- 3t0p - Dpo III β subunit – Eubacterium rectale
- 1jqj, 1jql - EcDpo III subunit β,δ (mutant)
- 4tr6 - Pol III β subunit – Bacillus subtilis
- 3p16, 3rb9, 4tr7 - Pol III β subunit – Mycobacterrium tuberculosis
- 4tr8 - PaPol III β subunit – Pseudomonas aeruginosa
- 4tsz - PaPol III β subunit + peptide
- DNA polymerase III subunit gamma
- 1njf, 1njg - EcDpo III subunit γ N-terminal domains 1-2
- 2gno - TmDpo III γ subunit
- 1xxh, 1jr3 - EcDpo III subunit γ,δ,δ’
- 1xxi - EcDpo III subunit γ,δ,δ’ + nucleotide
- DNA polymerase III subunit delta
- 1jqj, 1jql - EcDpo III subunit β,δ (mutant)
- 1a5t - EcDpo III subunit δ’
- 1xxh, 1jr3 - EcDpo III subunit γ,δ,δ’
- 1xxi - EcDpo III subunit γ,δ,δ’ + nucleotide
- 3glh - EcDpo III subunit δ,δ’,τ
- 3glf - EcDpo III subunit δ,δ’,τ + DNA
- 3gli - EcDpo III subunit δ,δ’,τ,ξ + DNA
- 3glg - EcDpo III subunit δ,δ’,τ (mutant) + DNA
- DNA polymerase III subunit epsilon
- 2gui – EcDpo III subunit ε N-terminal
- 1j53, 1j54 - EcDpo III subunit ε N-terminal exonuclease domain
- 2ido - EcDpo III subunit ε + HOT protein
- 4gx8 - EcDpo III ε subunit/ EcDpo III α subunit
- 4gx9 - EcDpo III ε subunit/ EcDpo III α subunit (mutant)
- 2xy8 - EcDpo III subunit ε,θ
- DNA polymerase III subunit tau
- 2aya - EcDpo III subunit τ
- 3glh - EcDpo III subunit δ,δ’,τ
- 3glf - EcDpo III subunit δ,δ’,τ + DNA
- 3gli - EcDpo III subunit δ,δ’,τ,ξ + DNA
- 3glg - EcDpo III subunit δ,δ’,τ (mutant) + DNA
- DNA polymerase III subunit xi
- 3gli - EcDpo III subunit δ,δ’,τ,ξ + DNA
- DNA polymerase III subunit theta
- DNA polymerase III subunit chi
- 1em8 - EcDpo III subunit ϕ,χ
- 3sxu - EcDpo III subunit ϕ,χ + peptide
- DNA polymerase III subunit phi
- 1em8 - EcDpo III subunit ϕ,χ
- 3sxu - EcDpo III subunit ϕ,χ + peptide
- DNA polymerase IV
- 4ir1, 4ir9, 4irc, 4ird, 4irk - EcPol IV + DNA
- 4r8u - EcPol IV + DNA + nucleotide
- 2rdi - SsPol IV
- 3pr4, 3pr5, 2r8g, 2r8h, 2r8i, 2uvr, 2uvu, 2uvv, 2uvw - SsPol IV (mutant) + DNA + nucleotide
- 4juz, 4jv0, 4jv1, 4jv2, 4qw8, 4qw9, 4qwa, 4qwb, 4qwc, 4qwd, 4qwe, 4tqr, 4tqs - SsPol IV + DNA + nucleotide
- 2xc9, 3m9m, 3m9n, 3m9o, 2v4q, 2v4r, 2ago, 1ryr, 1rys, 2w9a, 2w9b, 2w9c, 3gii, 3gij, 3gik, 3gil, 3gim, 3qz7, 3qz8, 3pvx, 3pw0, 3pw2, 3pw4, 3pw5, 3pw7, 3raq, 3rax, 3rb0, 3rb3, 3rb4, 3rb6, 3rbd, 3rbe, 4hyk, 4fbt, 4fbu, 4g3i - SsPol IV + DNA
- 2xca, 2xcp, 3khg, 3khh, 3khl, 3khr, 2w8k, 2w8l, 2rdj, 2v9w, 2va2, 2va3, 2ia6, 2ibk, 2jef, 2jeg, 2jei, 2jej, 2imw, 2j6s, 2j6t, 2j6u, 2asd, 2asj, 2asl, 2atl, 2au0, 2c22, 2c28, 2c2d, 2c2e, 2c2r, 2agp, 2agq, 2bqr, 2bqu, 2br0, 2bq3, 1s9f, 1s97, 1s0m, 1s0n, 1s0o, 1s10, 1n48, 1n56, 1jx4, 1jxl, 3t5h, 3t5j, 3t5k, 3t5l, 3v6h, 3v6j, 3v6k, 4gc6, 4gc7 - SsPol IV + DNA + nucleotide
- 3fds – SsPol IV + PCNA B + PCNA C
- 3bq2, 3bq0 – SaPol IV + DNA – Sulfolobus acidocaldarius
- 3bq1, 4f4w, 4f4x, 4f4y, 4f4z, 4f50 - SaPol IV + DNA + nucleotide
- 4nlg - SaPol IV (mutant) + DNA
- 4dez – Pol IV – Mycobacterium smegmatis
- DNA polymerase from enterobacteria phage T7
- 2ajq – T7Dpo (mutant) + thioredoxin (mutant) + DNA
- 1zyq, 1x9m, 1x9s, 1x9w, 1tk0, 1skr, 1sks, 1skw, 1sl0, 1sl1, 1sl2, 1t7p - T7Dpo (mutant) + thioredoxin + DNA + nucleotide
- 1t8e, 1tk5, 1tk8, 1tkd - T7Dpo + thioredoxin + DNA + nucleotide
- DNA polymerase
- 2gv9 – Dpo – Herpes simplex virus
- 1bgx – TaDpo + TP7 antibody
- 1ih7 – EpDpo]] - Enterobacteria phage RB69
- 3cfo, 4i9l – EpDpo (mutant)
- 1waf, 1waj - EpDpo + nucleotide
- 3uiq, 4dtj, 4dtm, 4dtn, 4dto, 4dtp, 4dtr, 4dts, 4dtu, 4dtx, 4du1, 4du3, 4du4 - EpDpo + DNA
- 3nci, 3lds, 3l8b, 3cq8, 3cfp, 3cfr, 3kd1, 3kd5, 4e3s - EpDpo (mutant) + DNA
- 3ndk, 3ne6, 3ngi, 3nhg, 3nae, 3lzj, 3lzi, 2ozs, 2p5g, 2dy4, 1q9x, 1q9y, 1ig9, 3qep, 3rma, 3rmb, 3rmc, 3rmd, 3rwu, 3s9h, 3scx, 3si6, 3sjj, 3snn, 3spy, 3spz, 3sq0, 3sq1, 3sq2, 3sq4, 3sun, 3suo, 3sup, 3suq, 3tab, 3tae, 3taf, 3tag, 4i9q, 4j2a, 4j2b, 4j2d, 4j2e, 4khn, 4khq, 4khs, 4khu, 4khw, 4khy, 4ki4, 4ki6, 4m3r, 4m3t, 4m3u, 4m3w, 4m3x, 4m3y, 4m3z, 4m41, 4m42, 4m45 - EpDpo (mutant) + DNA + nucleotide
- 1clq, 3iuq - EpDpo + DNA + nucleotide
- 2oyq, 2ozm, 2p5o, 2dtu, 3qei, 3qer, 3qes, 3qet, 3qev, 3qew, 3qex, 3qnn, 3qno, 4fj5, 4fj7, 4fj8, 4fj9, 4fjg, 4fjh, 4fji, 4fjj, 4fjk, 4fjl, 4fjm, 4fjn, 4fjx, 4fk0, 4fk2, 4fk4 - EpDpo (mutant) + DNA + nucleotide analog
- 2atq – EpDpo + GP32
- 1noy – T4Dpo + DNA - Enterobacteria phage T4
- 1noz – T4Dpo residues 1-388
- 2ex3 – BpDpo (mutant) + DNA terminal protein – Bacillus phage φ29
- 2py5, 2pzs, 1xhz, 1xi1 – BpDpo (mutant) + DNA
- 2pyj, 2pyl - BpDpo (mutant) + DNA + nucleotide
- 1xhx - BpDpo (mutant)
- 3a2f - PfDpo + PCNA - Pyrococcus furiosus
- 2jgu, 4ahc – PfDpo
- 4ail – PfDpo + DNA
- 1tgo - TgDpo – Thermococcus gorgonarius
- 2vwj, 2xhb – TgDpo (mutant) + DNA
- 2vwk - TgDpo (mutant)
- 1wn7, 1wns – TkDpo B - Thermococcus kodakarensis
- 4k8z - TkDpo (mutant) + DNA
- 1qht - ThDpo (mutant) – Thermococcus
- 4k8x - ThDpo (mutant) + DNA
- 1d5a – DeDpo
- DNA polymerase alpha
- 4e2i – hDpo α subunit β + large T antigen – human
- 4bpx - hDpo α catalytic subunit + DNA primase small subunit
- 4q5v - hDpo α catalytic subunit + DNA + RNA + aphidicolin
- 4qcl - hDpo α catalytic subunit + DNA + RNA + nucleotide
- 2keb - hDpo αB - NMR
- 1n5g, 1k0p, 1k18 - hDpo α zinc finger domain – NMR
- DNA polymerase beta
- 4p4m, 4p4o, 4p4p - Dpo β + DNA + nucleotide – Leishmania infantum
- 4ppx - hDpo β + spiroiminohydantoin + DNA
- 3q8p, 3q8q, 3lk9, 3mby, 3isb, 3isc, 1zjm, 1tv9, 1tva, 1bpx, 1bpz, 1zqa, 1zqb, 1zqc, 1zqd, 1zqf, 1zqg, 1zqh, 1zqi, 1zaj, 1zqk, 1zql, 1zqm, 1zqn, 1zqo, 1zqp1zqq, 1zqr, 1zqs, 1zqt, 1zqu, 1zqv, 1zqw, 1zqx, 1zqy, 1zqz, 7ice, 7icf, 7ici, 7icj, 7icl, 7icm, 7icp, 7icr, 7ict, 7icu, 7icv, 8icb, 8icc, 9icj, 9ick, 9icl, 9icm, 9icp, 9icw, 9icx, 9icy, 7icg, 7ich, 7ick, 7icn, 7ico, 7icq, 7ics, 1zqe, 4gxi, 4gxj, 4gxk, 4kld, 4kle, 4klf, 4klg, 4klh, 4kli, 4klj, 4kll, 4klm, 4klo, 4klp, 4klq, 4kls, 4klt, 4klu, 1zqj, 4lvs, 4m2y, 4m47, 4nlk, 4nln, 4nlz, 4nm1, 4nm2, 3gdx, 3rh4, 3rh5, 3rh6, 4tup, 4tuq, 4tur, 4tus - hDpo β + DNA
- 3jpn, 3jpo, 3jpp, 3jpq, 3jpr, 3jpt, 3jps, 3isd, 3c2k, 3c2l, 3c2m, 2pxi, 2iso, 2isp, 2i9g, 2fmp, 2fmq, 2fms, 1zjn, 1mq2, 1mq3, 1bpy, 8ica, 8ice, 8icf, 8icg, 8ich, 8ici, 8icj, 8ick, 8icl, 8icm, 8icn, 8ico, 8icp, 8icq, 8icr, 8ics, 8ict, 8icu, 8icv, 8icw, 8icx, 8icz, 9ice, 9icg, 9ich, 9ici, 9icq, 9ics, 9ict, 9icu, 9icv, 9icr, 9icn, 9ico, 8icy, 9ica, 9icb, 9icc, 9icf, 4do9, 4doa, 4dob, 4doc, 3rje, 3rjf, 3rjg, 3rjh, 3rji, 3rjj, 3rjk, 3tfr, 3tfs, 4mf2, 4mf8, 4mfa, 4mfc, 4mff, 4nxz, 4ny8, 4o5c, 4o5e, 4o5k, 4o9m, 4p2h, 4pgq, 4pgx, 4pha, 4phd, 4uaw, 4uay, 4uaz, 4ub1, 4ub2, 4ub3, 4ub4, 4ub5, 4ubb, 4ubc - hDpo β + DNA + nucleotide
- 2p66, 4f5n - hDpo β + DNA + nucleotide analog
- 4f5o, 4f5p, 4f5q, 4f5r - hDpo β (mutant) + DNA + nucleotide analog
- 3ogu, 4jwm, 4jwn, 4m9g, 4m9h, 4m9j, 4m9l, 4m9n, 4r63, 4r64, 4r65, 4r66 - hDpo β (mutant) + DNA
- 2v6z - hDpo β N-terminal (mutant)]] - NMR
- 3k75, 3lqc - hDpo β + DNA repair protein XRCC1
- 1rpl, 2bpc, 1bpe, 1bpb, 1bpd, 3uxn - rDpo β – rat
- 2van, 1jn3, 3uxo, 3v7l- rDpo β (mutant)
- 1dk2, 1dk3, 1bno, 1bnp - rDpo β N-terminal – NMR
- 1nom - rDpo β C-terminal
- 1huo, 1huz, 3v7j - rDpo β + DNA
- 3uxp, 3v72, 3v7k - rDpo β (mutant) + DNA
- 1bpe - rDpo β + nucleotide
- 2bpf, 2bpg - rDpo β + DNA + nucleotide
- 3au2 – TtDpo β + GTP – Thermus thermophilus
- 3b0x, 3b0y – TtDpo β (mutant) + GTP
- 3au6, 3auo – TtDpo β + GTP + DNA
- DNA polymerase gamma
- 3ikm - hDpo γ1+ γ2
- 3ikl, 2g4c - hDpo γ2
- 2jw5 - hDpo λ BRCT domain
- 1xsl - hDpo λ catalytic domain
- 1nzp - hDpo λ lyase domain - NMR
- 3pmn, 3pnc, 3mda, 2gws, 2bcq, 2bcr, 2bcs, 2bcu, 2bcv, 1xsp, 1rzt - hDpo λ + DNA
- 3mgh, 3c5f, 3c5g, 2pfn - hDpo λ (mutant) + DNA
- 3pml, 3mdc, 1xsn - hDpo λ + DNA + nucleotide
- 4k4g, 4k4h, 4k4i - hDpo λ + DNA + nucleotide analog
- 3mgi, 3hw8, 3hwt, 3hx0, 2pfo, 2pfp, 2pfq - hDpo λ (mutant) + DNA + nucleotide
- DNA polymerase delta
- 3e0j - hDpo δ2+ δ3
- 3upq, 3uq0, 3uq2 - hDpo δ (mutant) + DNA
- 4fo6 - hDpo δ (mutant) + DNA + nucleotide analog
- DNA polymerase epsilon
- DNA polymerase zeta
- 3abd, 3abe - hDpo ζ catalytic subunit Rev3 + mitotic spindle assembly checkpoint protein Rev7
- 3vu7, 4gk0 - hDpo ζ catalytic subunit + DNA repair protein Rev1 + MAD2B
- 4fjo, 4gk5 - hDpo κ + hDpo ζ catalytic subunit + DNA repair protein Rev1 + MAD2B
- DNA polymerase eta
- 2i5o - hDpo η ubiquitin-binding zinc finger – NMR
- 3si8 - hDpo η + DNA
- 2lsj, 2lsi - hDpo η + DNA repair protein Rev1
- 4dl2, 4dl3, 4dl4, 4dl5, 4dl6, 4dl7, 4eey, 4ecq, 4ecr, 4ecs, 4ect, 4ecu, 4ecv, 4ecw, 4ecx, 4ecy, 4ecz, 4ed0, 4ed1, 4ed2, 4ed3, 4ed6, 4ed7, 4ed8, 4o3n, 4o3o, 4o3p, 4o3q, 4o3r, 4o3s, 4q8e, 4q8f, 4rnm, 4rnn, 4rno, 4x0p, 4x0q - hDpo η + DNA + nucleotide
- 5aga - hDpo η + nucleotide
- DNA polymerase iota
- 3q8r, 3q8s, 3h4b, 3h4d, 3gv5, 3gv7, 3gv8, 3epg, 3epi, 2fll, 2fln, 2flp, 2dpi, 2dpj, 2alz, 1zet, 1t3n, 4ebc, 4ebd, 4ebe, 4fs1, 4fs2, 4eyh, 4eyi, 3g6v, 3g6x, 3g6y - hDpo ι + DNA + nucleotide
- 3ngd, 3osn, 3h40 - hDpo ι catalytic fragment + DNA
- 2ktf - hDpo ι + ubiquitin
- 2l0f, 2l0g - hDpo ι + ubiquitin – NMR
- 2khu - hDpo ι ubiquitin binding motif – NMR
- 2khw - hDpo ι ubiquitin binding motif + ubiquitin – NMR
- 2kwu, 2kwv - mDpo ι C-terminal + ubiquitin - NMR
- 3ai4 - mDpo ι/yEGFP
- DNA polymerase kappa
- DNA polymerase mu
- 2htf, 2dun - hDpo μ BRCT domain – NMR
- 2ihm - mDpo μ catalytic domain + DNA – mouse
- DNA polymerase nu
- DNA polymerase chi
- 2m2t – AsfvDpo X – African swine fever virus – NMR
- 2m2u, 2m2v – AsfvDpo X + nucleotide – NMR
- 2m2w – AsfvDpo X + nucleotide + DNA – NMR
- 2w9m – Dpo X – Deinococcus radiodurans
- DNA polymerase from yeast
- 3oiq - yDpo α + cell division control protein 13
- 3flo, 3lgb - yDpo α subunits A,B
- 4b08, 4fvm - yDpo α subunit A
- 4fxd, 4fyd - yDpo α subunit A + RNA + DNA
- 3iay - yDpo δ catalytic subunit + DNA
- 3oha, 3ohb, 3mfh - yDpo ε (mutant) + DNA
- 3mfi, 4m8o - yDpo ε (mutant) + DNA + nucleotide
- 2r8j, 2r8k, 4ptf - yDpo ε catalytic domain + DNA + nucleotide
- 2xgp, 2xgq, 2wtf - yDpo ε + DNA
- 1jih – yDpo η catalytic domain
- 3bjy, 2aq4 – yRev1 catalytic domain + DNA + nucleotide
- DNA polymerase Rev1
- 3gqc – hRev1 + DNA + nucleotide
- 2ebw – hRev1 BRCT domain – NMR
- 3bjy, 2aq4 – yRev1 catalytic domain + DNA + nucleotide
- 2lsi - hDpo κ peptide + hRev1
- 4fjo, 4gk5 - hDpo κ + hDpo ζ catalytic subunit + Rev1 + MAD2B
- 2lsj, 2lsi - hDpo η + Rev1
- 2lsk - mDpo κ + Rev1
- Terminal deoxynucleotidyl transferase
- 2coe – TdT BRCT domain – NMR
- 1jms – mTdT catalytic domain + Mg
- Terminal deoxynucleotidyl transferase binary complex
- 4iqt, 4iqu, 4iqv, 4iqw – mTdT catalytic domain + inhibitor
- 4i2i – mTdT catalytic domain + Mg + Zn + adenosine-pentaphosphate
- 4i2j – mTdT catalytic domain + CTP + Zn
- 1kej – mTdT catalytic domain + ATP derivative + Co
- 4i2d – mTdT catalytic domain + ATP derivative + Mg
- 4i29 – mTdT catalytic domain + AMP derivative + Mn
- 4i2b – mTdT catalytic domain + AMPCPP + Mg
- 4i2c – mTdT catalytic domain + AMPCPP + Mn
- 4i2a – mTdT catalytic domain + UMP derivative + Mg
- Terminal deoxynucleotidyl transferase ternary complex with DNA
- 4i2e – mTdT catalytic domain + AMPCPP + Co + DNA
- 4i2h – mTdT catalytic domain + AMPCPP + Zn + Mg + DNA
- 4i27 – mTdT catalytic domain + TTP derivative + TMP + Mg + DNA
- 1kdh – mTdT catalytic domain + UMP derivative + Mg + DNA
- 4i28, 4i2f – mTdT catalytic domain + Mg + Zn + DNA
- 4i2g – mTdT catalytic domain + Mg + Co + DNA
ReferencesReferences
- ↑ Steitz TA. DNA polymerases: structural diversity and common mechanisms. J Biol Chem. 1999 Jun 18;274(25):17395-8. PMID:10364165