Helicase 3D structures
3D structures of helicase3D structures of helicase
Updated on 16-August-2020
- ATP-dependent DNA helicase TA0057
- 5h8w – TaTA0 + DNA – Thermoplasma acidophilum
- 5h8w – TaTA0 + DNA – Thermoplasma acidophilum
- ATP-dependent DNA helicase LHR
- 5v9x – MsLHR + DNA – Mycobacterium smegmatis
- 5v9x – MsLHR + DNA – Mycobacterium smegmatis
- Dead box ATP-dependent RNA helicase
- 4xw3 – hDDX1 SPRY domain
- 2i4i – hDDX3X residues 167-581
- 4px9 - hDDX3X residues 135-407
- 4pxa - hDDX3X residues 135-407 (mutant)
- 5e7i - hDDX3X residues 133-584
- 2jgn – hDDX3X helicase domain residues 408-579
- 3ly5 – hDDX18 dead domain
- 6l5l, 6l5o – hDDX21 residues 120-495 (mutant)
- 6l5m – hDDX21 + AMP
- 6l5n – hDDX21 + RNA
- 2rb4 – hDDX25 helicase domain
- 2p6n – hDDX41 helicase domain (mutant)
- 2e29, 2m3d - hDDX50 GUCT domain - NMR
- 1vec – hP54 N terminal
- 3fho – DBP5 – fission yeast
- 2kbe – yDBP5 N terminal – NMR
- 2kbf - yDBP5 C terminal – NMR
- 3gfp - yDBP5 C-terminal
- 2hjv – BsDBPA domain 2 – Bacillus subtilis
- 2g0c - BsDBPA RNA-binding domain
- 3eaq, 3ear, 3eas – TtHera residues 215-426 - Thermus thermophilus
- 3i31 - TtHera residues 431-517
- 3i32 - TtHera residues 218-517
- 3nej - TtHera N terminal (mutant)
- 5ivl – GsDB CSHA - Geobacillus stearothermophilus
- 5b88 - EcDBP RRM-like domain - NMR
- 5gju - EcDBP residues 6-210
- 5gi4 - EcDBP residues 218-445
- 6aib – SaDB CSHA N-terminal – Staphylococcus aureus
- 4xw3 – hDDX1 SPRY domain
- Dead box ATP-dependent RNA helicase complexes
- 3fmo, 3fhc – hDBP5 + Nup214
- 3fht – hDBP5 + AMPPNP + RNA
- 6cz5 - hDDX3X residues 132-607 + AMP
- 6o5f - hDDX3X + RNA
- 6b4k – hDDX19B residues 54-479 + ANP
- 6b4j, 6b4i – hDDX19B residues 54-479 + GLE1 + Nup42 + ANP
- 3fmp – hDDX19B + Nup214
- 3g0h – hDDX19B residues 54-275 + ATP analog + RNA
- 3ews - hDDX19B residues 54-275 + ADP
- 5e7m, 5e7j – hDDX3X catalytic domain + nucleotide
- 3dkp – hDDX52 domain I + ADP
- 2wax, 2way – hDDX6 C terminal + EDC3-FDF peptide
- 2j0s, 2j0q, 2hyi – hDDX48 + protein mago nashi homolog + RNA-binding protein 8A + protein CASC3 + RNA
- 2j0u - hDDX48 + protein CASC3
- 2db3 – DmVASA residues 200-623 + RNA – Drosophila melanogaster
- 5nt7 – DmVASA RecA-like domain + maternal effect protein
- 3rrm – yDBP5 residues 91-482 (mutant) + GLE1 + NUP159 + ADP + IP6
- 3rrn - yDBP5 residues 91-482 (mutant) + GLE1 + IP6
- 5elx - yDBP5 residues 91-482 + RNA
- 3pew, 3pey - yDBP5 residues 91-482 (mutant) + ADP + BeF3 + RNA
- 3peu, 3pev - yDBP5 C-terminal (mutant) + GLE1 + IP6
- 3i5x, 3i5y – yMSS116 + AMPPNP + RNA
- 3sqw, 3sqx - yMSS116 + AMPPNP + RNA
- 3i61, 4tyw, 4tyy, 4tz0, 4tz6 - yMSS116 + nucleotide + BeF3 + RNA
- 3i62 - yMSS116 + ADP + AlF4 + RNA
- 4tyn - yMSS116 + ADP + DNA
- 2xau, 3kx2, 5jpt – yPrp43 + nucleotide
- 5i8q - yPrp43 + ADPNP + RNA
- 5ltk, 5ltj, 5d0u - CtPrp43 + ADP – Chaetomium thermophilum
- 5lta - CtPrp43 + ADP + RNA
- 3jrv – DDX3X + protein K7 – Vaccinia virus
- 3nbf - TtHera N terminal (mutant) + 8-oxo-ADP
- 3moj - BsDBPA RNA-binding domain + RNA
- 6aic – SaDB CSHA N-terminal + AMP
- 3fmo, 3fhc – hDBP5 + Nup214
- DEAH box RNA helicase
- 2eqs – hDHX8 S1 domain residues 260-355
- 3i4u – hDHX8 residues 950-1183
- 6hys – hDHX8 helicase domain residues 548-1220 + ATP
- 6hyt – hDHX8 helicase domain + ADP
- 6hyu – hDHX8 helicase domain + RNA
- 3llm – hDHX9
- 5xdr – hDHX15 residues 110-795 (mutant)
- 6sh6, 6sh7 – hDHX15 + Nfkb-repressing factor + ADP
- 2n16 – hDHX36 G-quadruplex domain - NMR
- 2rqa – hDHX58 C terminal – NMR
- 3vyx, 3vyy – hDHX9 RNA-binding domain + RNA
- 2n21 – hDHX36 G-quadruplex domain + DNA - NMR
- 5e3h - hDHX58 residues 232-925 + RNA
- 3eqt- hDHX58 residues 541-678 + RNA
- 5vha – bDHX36 residues 150-1010 - bovine
- 5vhc, 5vhd – bDHX36 residues 150-1010 + ADP
- 5vhe – bDHX36 residues 56-1010 + DNA
- 2rs6, 2rs7 – mDHX9 RNA-binding domain – NMR
- 6heg, 6eud – EcHRPB
- 2eqs – hDHX8 S1 domain residues 260-355
- ATP-dependent RNA helicase
- 2g9n - hEIF4A dead domain
- 5zbz - hEIF4A dead domain + sanguinarine
- 5zc9 - hEIF4A dead domain + ATP + RNA
- 6ieg - hDOB1 residues 70-1042
- 6ro1 - hDOB1 residues 70-1042 + NVL
- 6ieh - hDOB1 residues 70-1042 + NRDE2
- 6c90 - hDOB1 residues 70-600 + ZCCHC8
- 6d6r, 6d6q - hDOB1 in exosome + RNA – Cryo EM
- 2xzl – yNAM7 CH and helicase domains + RNA
- 2xgj – yDOB1 residues 81-1073 + RNA
- 4u4c - yDOB1 residues 81-1073 + poly(A) RNA polymerase protein 2
- 4qu4 - yDOB1
- 5ooq - yDOB1 residues 81-1073 + NOP53
- 5suq – ySUB2 + TEX1 + THO2
- 5sup – ySUB2 + YRA1 + RNA
- 2vso, 2vsx – yEIF4A + initiation factor 4F middle domain
- 2g9n - hEIF4A dead domain
- 2g9n - hEIF4A dead domain
- Viral ATP-dependent RNA helicase NS3
- 3o8b, 3o8d, 1cu1, 8ohm, 1hei, 4a92, 3rvb – HvHel NS3 residues 1186-1658 – Hepatitis C virus
- 1onb, 1jr6 - HvHel NS3 arginine-rich domain residues 1353-1507 – NMR
- 2jlq, 2bhr, 2bmf, 2whx, 2wzq – DvHel NS3 residues 1646-2092 – Dengue virus
- 5xc7 – DvHel NS3 residues 1646-2092 (mutant)
- 2z83 – Hel NS3 residues 167-624 – Japanese encephalitis virus
- 2v8o, 2wv9 - Hel NS3 helicase domain – Murray valley encephalitis virus
- 2qeq - Hel NS3 residues 1691-2124 – Kunjin virus
- 5txg, 5jmt, 5vi7, 5jps, 6mh3 - ZvHel NS3 helicase domain – Zika virus
- 5k8u, 5k8l, 5k8i, 5jwh, 5jrz - ZvHel NS3 residues 164-621
- 5x8y - ZvHel NS1 residues 168-352
- 2v6i – KvHel helicase domain – Kokobera virus
- 2v6j - KvHel helicase domain (mutant)
- 5wso, 5gvu - Hel NS3 residues 1939-2414 – bovine viral diarrhea virus
- 3o8b, 3o8d, 1cu1, 8ohm, 1hei, 4a92, 3rvb – HvHel NS3 residues 1186-1658 – Hepatitis C virus
- Viral ATP-dependent RNA helicase NS3 complexes
- 3o8c, 3o8r, 3kqh, 3kqk, 3kql, 3kqn, 3kqu, 1a1v - HvHel NS3 + RNA
- 2f9v - HvHel NS3 protease domain + polyprotein
- 2a4g, 1rtl, 1w3c, 1dxp - HvHel NS3 protease domain + NS4A peptide
- 2a4q, 2a4r, 2f9u, 2fm2, 1dy8, 1dy9 - HvHel NS3 protease domain + NS4A peptide + inhibitor
- 2jlr - DvHel NS3 residues 1646-2092 + AMPPNP
- 2jls - DvHel NS3 residues 1646-2092 + ADP
- 2jlu, 2jlw, 5xc6 - DvHel NS3 residues 1646-2092 + RNA
- 2jlv - DvHel NS3 residues 1646-2092 + AMPPNP + RNA
- 2jlx, 2jly, 2jlz - DvHel NS3 residues 1646-2092 + ADP + RNA
- 2vbc - DvHel NS3 residues 1475-2092 + NS2A peptide
- 5k8t - ZvHel NS3 residues 164-621 + GTP
- 5gjc - ZvHel NS3 residues 1676-2119 + ATP
- 5gjb - ZvHel NS3 residues 1676-2119 + RNA
- 5y4z - ZvHel NS3 residues 1676-2119 + AMPPNP
- 3o8c, 3o8r, 3kqh, 3kqk, 3kql, 3kqn, 3kqu, 1a1v - HvHel NS3 + RNA
- ATP-dependent RNA helicase SUV3
- ATP-dependent RNA helicase A
- ATP-dependent RNA helicase Repa
- ATP-dependent RNA helicase HEF
- 1x2i – HEF DNA-binding domain – Pyrococcus furiosus
- ATP-dependent RNA helicase Srmb
- 2yjt - EcSrmb residues 219-388 + RRAA
- 2yjt - EcSrmb residues 219-388 + RRAA
- ATP-dependent RNA helicase Dhh1
- Werner syndrome ATP-dependent DNA helicase
- ATP-dependent DNA helicase Q
- ATP-dependent DNA helicase RecG
- 1gm5 – TmRecG + DNA
- 1gm5 – TmRecG + DNA
- ATP-dependent DNA helicase RecQ (Bloom Syndrome helicase)
- 4cgz, 4o3m - hRecQ catalytic domain + DNA
- 4cdg - hRecQ catalytic domain + nanobody
- 1d8b - yRecQ HRDC domain - NMR
- 3iuo – RecQ residues 604-725 – Porphyromonas gingivalis
- 2rhf – DrRecQ HRDC domain 3 – Deinococcus radiodurans
- 2ma1 - DrRecQ HRDC domain – NMR
- 4q48 - DrRecQ catalytic domain
- 4q47 - DrRecQ catalytic domain + ADP
- 1wud - EcRecQ HRDC domain
- 1oyw - EcRecQ catalytic domain
- 1oyy - EcRecQ catalytic domain + ATP
- 4cgz, 4o3m - hRecQ catalytic domain + DNA
- ATP-dependent DNA helicase RuvA, RuvB
- 2ztc, 2ztd, 2zte, 2h5x – MtRuvA – Mycobacterium tuberculosis
- 1bvs - RuvA – Mycobacterium leprae
- 1cuk, 1hjp – EcRuvA
- 1d8l – EcRuvA N terminal
- 1c7y, 1bdx – EcRuvA + DNA
- 1hqc – TtRuvB
- 1ixr, 1ixs – TtRuvA + RuvB (mutant)
- 1in4 – TmRuvB
- 1in5, 1in6, 1in7, 1in8, 1j7k – TmRuvB (mutant)
- 3pfi – RuvB + ADP – Campylobacter jejuni
- 6blb - PaRuvB + ADP - Pseudomonas aeruginosa
- 2ztc, 2ztd, 2zte, 2h5x – MtRuvA – Mycobacterium tuberculosis
- ATP-dependent DNA helicase RuvB-like
- 2c9o – hRuvBL1 + ADP
- 6h7x – hRuvBL2
- 3uk6 – hRuvBL2 + ADP
- 2cqa – hRuvBL2 C-terminal - NMR
- 2xsz – hRuvBL1 + hRuvBL2 + ATP
- 6qi8, 6qi9 – hRuvBL1 + hRuvBL2 + ADP
- 5oaf – hRuvBL1 + hRuvBL2 + ADP - Cryo EM
- 6fo1 – hRuvBL1 + hRuvBL2 + RPAP3 + ADP - Cryo EM
- 6igm – hRuvBL1 + hRuvBL2 + actin-related protein + helicase SRCAP + protein - Cryo EM
- 6hts – hRuvBL1 + hRuvBL2 + INO80 + ARP5 + histones + DNA - Cryo EM
- 5oun – yRuvBL2 DII domain - yeast - NMR
- 6gej, 6gen – yRuvBL1 + yRuvBL2 + vacuolar protein sorting-associated proteins + ARP6 + SWR complex protein 6 + histones + helicase SWR1 + ADP + ATP + DNA - Cryo EM
- 4wvy – CtRuvBL1 + CtRuvBL2 + ATP
- 4ww4 – CtRuvBL1 + CtRuvBL2 + ADP
- 6fhs – CtRuvBL1 + CtRuvBL2 + INO80 + LES2 + LES5 + ARP5 + ADP + ATP - Cryo EM
- 6fml – CtRuvBL1 + CtRuvBL2 + INO80 + LES2 + LES6 + actin-related protein + histones + ADP + ATP + DNA - Cryo EM
- 5f4h, 5yww – RuvBL (mutant) - Sulfolobus islandicus
- 2c9o – hRuvBL1 + ADP
- ATP-dependent DNA helicase UVSW
- ATP-dependent DNA helicase DDA
- 3upu – T4DDA + DNA
- 3upu – T4DDA + DNA
- ATP-dependent DNA helicase PriA
- ATP-dependent DNA helicase PcrA
- DnaB helicase or replicative DNA helicase
- 3gxv – HpDnaB – Helicobacter pylori
- 4a1f – HpDnaB C terminal
- 2r6d – BsDnaB – Bacillus stearothermophilus
- 2r6e, 2r6d - GsDnaB
- 2r5u – MtDnaB N terminal
- 3bgw – BpDnaB-like – Bacillus phage SPP1
- 3bh0 - BpDnaB-like G40P ATPase domain
- 2q6t – DnaB – Thermus aquaticus
- 1mi8, 6frh – SyDnaB – Synechocystis
- 6frg, 6fre – SyDnaB (mutant)
- 6bbm – EcDnaB + replication protein P – Cryo EM
- 1b79 - EcDnaB N terminal
- 1jwe - EcDnaB N terminal - NMR
- 2r6c, 2r6a – BsDnaB + DnaG helicase-binding domain
- 6bs8, 6own – MsDnaB 238-376
- 6rix, 6riy – DnaB (mutant) – Mycobacterium chimaera
- 3gxv – HpDnaB – Helicobacter pylori
- DnaC helicase
- Helicase BLM
- Helicase CA8 or Prp28
- 4w7s – yCa8
- 4w7s – yCa8
- Helicase NSP
- Helicase SEN1
- Helicase DING
- Helicase SNF2
- Helicase SKI2
- Helicase SWR1
- 5i9e – ySWR1 + actin + actin-related protein
- 5i9e – ySWR1 + actin + actin-related protein
- Helicase XPD
- Pre-mRNA-splicing Helicase
- crispr-associated helicase Cas3