Transcriptional activator 3D structures: Difference between revisions
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{{#tree:id=OrganizedByTopic|openlevels=0| | {{#tree:id=OrganizedByTopic|openlevels=0| | ||
*Gcn4 | *Gcn4 TA See [[Gcn4]] | ||
*Gcn5 | *Gcn5 TA | ||
**[[1e6i]] – yTA brododomain + histone H4 peptide - yeast<br /> | **[[1e6i]] – yTA brododomain + histone H4 peptide - yeast<br /> | ||
**[[1ygh]] – yTA histone acetyltransferase domain <br /> | **[[1ygh]] – yTA histone acetyltransferase domain <br /> | ||
*C-Myb | *C-Myb TA; domains – DBD ; DBD repeat 1 38-89; repeat 2 90-141; repeat 3 142-193; transcription activation 291-315 | ||
**[[1mse]], [[1msf]] – mTA DBD | **[[1mse]], [[1msf]] – mTA DBD 90-193 + DNA – NMR - mouse<br /> | ||
**[[1mbe]], [[1mbf]] – mTA DBD repeat 1 + DNA - NMR<br /> | **[[1mbe]], [[1mbf]] – mTA DBD repeat 1 + DNA - NMR<br /> | ||
**[[1mbg]], [[1mbh]] – mTA DBD repeat 2 + DNA - NMR<br /> | **[[1mbg]], [[1mbh]] – mTA DBD repeat 2 + DNA - NMR<br /> | ||
**[[1mbj]], [[1mbk]] – mTA DBD repeat 3 + DNA - NMR<br /> | **[[1mbj]], [[1mbk]] – mTA DBD repeat 3 + DNA - NMR<br /> | ||
**[[1h88]] – mTA DBD | **[[1h88]] – mTA DBD + DNA + CCAAT/enhancer binding protein β<br /> | ||
**[[1h89]] – mTA DBD | **[[1h89]] – mTA DBD + DNA + CAAT/enhancer binding protein β<br /> | ||
**[[1guu]] – mTA DBD repeat 1 <br /> | **[[1guu]] – mTA DBD repeat 1 <br /> | ||
**[[1gv2]] – mTA DBD repeat 2,3 <br /> | **[[1gv2]] – mTA DBD repeat 2,3 <br /> | ||
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**[[1gvd]] – mTA DBD repeat 2 (mutant) <br /> | **[[1gvd]] – mTA DBD repeat 2 (mutant) <br /> | ||
**[[1idy]], [[1idz]] – mTA DBD repeat 3 (mutant) - NMR<br /> | **[[1idy]], [[1idz]] – mTA DBD repeat 3 (mutant) - NMR<br /> | ||
**[[1sb0]], [[2agh]] – mTA | **[[1sb0]], [[2agh]] – mTA transcription activation domain + CREB-binding protein - NMR<br /> | ||
**[[6dmx]], [[6dnq]] – mTA transcription activation domain + CREB-binding protein p3ptide + Bzip factor <br /> | |||
**[[6dmx]], [[6dnq]] – mTA | |||
*Psp operon | *Psp operon TA | ||
**[[2bjw]] – EcTA AAA domain – ''Escherichia coli'' | **[[2bjw]] – EcTA AAA domain –'' Escherichia coli''<br /> | ||
**[[4qnr]] – EcTA AAA domain (mutant) + ATP<br /> | **[[4qnr]] – EcTA AAA domain (mutant) + ATP<br /> | ||
**[[4qos]] – EcTA AAA domain (mutant) + ADP<br /> | **[[4qos]] – EcTA AAA domain (mutant) + ADP<br /> | ||
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**[[2c99]] – EcTA AAA domain + AMPPNP<br /> | **[[2c99]] – EcTA AAA domain + AMPPNP<br /> | ||
**[[2vii]] – EcTA AAA domain + AMP + Mg<br /> | **[[2vii]] – EcTA AAA domain + AMP + Mg<br /> | ||
**[[5nss]] – EcTA | **[[5nss]] – EcTA in RNA polymerase complex – Cryo EM<br /> | ||
*TenA | *TenA TA | ||
**[[1tyh]], [[1yaf]] – BsTA – ''Bacillus subtilis''<br /> | **[[1tyh]], [[1yaf]] – BsTA – ''Bacillus subtilis''<br /> | ||
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**[[1udd]] – TA – ''Pyrococcus horikishii''<br /> | **[[1udd]] – TA – ''Pyrococcus horikishii''<br /> | ||
*LasR | *LasR TA or transcriptional regulator LasR | ||
**[[6mww]] – PaTA – ''Pseudomonas aeruginosa''<br /> | **[[6mww]] – PaTA – ''Pseudomonas aeruginosa''<br /> | ||
**[[2uv0]] – PaTA LBD residues 1-173<br /> | **[[2uv0]] – PaTA LBD residues 1-173 <br /> | ||
**[[3ix3]], [[6mvn]], [[6mvm]] – PaTA LBD + oxo-dodecanoyl-homoserine lactone<br /> | **[[3ix3]], [[6mvn]], [[6mvm]] – PaTA LBD + oxo-dodecanoyl-homoserine lactone<br /> | ||
**[[3ix4]], [[3ix8]], [[3jpu]], [[6d6a]], [[6d6b]], [[6d6c]], [[6d6d]], [[ | **[[3ix4]], [[3ix8]], [[3jpu]], [[6d6a]], [[6d6b]], [[6d6c]], [[6d6d]], **[[6d6p]], [[6d6l]], [[6d6m]], [[6d6o]], [[6d6n]] – PaTA LBD + benzoate derivative<br /> | ||
**[[6mwl]] – PaTA + oxothiolan derivative<br /> | **[[6mwl]] – PaTA + oxothiolan derivative<br /> | ||
**[[6mwh]] – PaTA + acetamide derivative<br /> | **[[6mwh]] – PaTA + acetamide derivative<br /> | ||
**[[4ng2]] – PaTA LBD + protein<br /> | **[[4ng2]] – PaTA LBD + protein<br /> | ||
**[[6mwz]] – PaTA (mutant) + peptide<br /> | **[[6mwz]] – PaTA (mutant) + peptide<br /> | ||
**[[6v7w]], [[6v7x]] – PaTA + Aqs1<br /> | |||
*CadC | *CadC TA | ||
**[[3ly7]], [[3lya]] – EcTA periplasmic domain <br /> | **[[3ly7]], [[3lya]] – EcTA periplasmic domain 188-512<br /> | ||
**[[3ly8]], [[3ly9]] – EcTA periplasmic domain (mutant)<br /> | **[[3ly8]], [[3ly9]] – EcTA periplasmic domain (mutant)<br /> | ||
**[[5ju7]] – EcTA DBD | **[[5ju7]] – EcTA DBD 2-107<br /> | ||
*Mal-Rpel TA | |||
*Mal-Rpel | |||
**[[2v51]], [[2v52]] – mTA residues 16-41 + actin <br /> | **[[2v51]], [[2v52]] – mTA residues 16-41 + actin <br /> | ||
**[[2yje]], [[2yjf]] – mTA Rpel domain + actin <br /> | **[[2yje]], [[2yjf]] – mTA Rpel domain + actin <br /> | ||
*Brg1 | *Brg1 TA | ||
**[[5ea1]] – hTA bromodomain 1418-1536 - human<br /> | |||
**[[3uvd]] – hTA bromodomain - NMR<br /> | |||
**[[2grc]], [[3uvd]], [[5dkd]], [[6zs2]] – hTA bromodomain + inhibitor<br /> | |||
**[[6hr2]] – hTA bromodomain + ElonginB + ElonginC + pVHL<br /> | |||
**[[2i8b]] – TA C terminal – Zaire ebolavirus<br /> | **[[2i8b]] – TA C terminal – Zaire ebolavirus<br /> | ||
**[[3v7o]] – TA C terminal – Reston ebolavirus<br /> | **[[3v7o]] – TA C terminal – Reston ebolavirus<br /> | ||
* | *Flagelar TA | ||
**[[1g8e]] – EcTA FlhD<br /> | **[[1g8e]] – EcTA FlhD<br /> | ||
**[[2avu]] – EcTA FlhC+ | **[[2avu]] – EcTA FlhC+FLHD<br /> | ||
**[[5hxg]] – StTA FlhD + STM1697 <br /> | **[[5hxg]] – StTA FlhD + STM1697 <br /> | ||
* | *Tipa TA | ||
**[[1ny9]] – SlTA antibiotic binding domain – ''Streptomyces lividans'' - NMR<br /> | **[[1ny9]] – SlTA antibiotic binding domain – ''Streptomyces lividans'' - NMR<br /> | ||
**[[2mbz]], [[2mc0]] - SlTA antibiotic binding domain + thiopeptide - NMR<br /> | **[[2mbz]], [[2mc0]] - SlTA antibiotic binding domain + thiopeptide - NMR<br /> | ||
**[[1r8d]] – BsTA <br /> | |||
**[[1r8d | |||
* | *Rfah TA | ||
**[[2oug]] – EcTA <br /> | **[[2oug]] – EcTA <br /> | ||
**[[2lcl]] – EcTA C terminal - NMR<br /> | **[[2lcl]] – EcTA C terminal - NMR<br /> | ||
**[[5ond]] – EcTA | **[[5ond]] – EcTA + DNA <br /> | ||
*SoxR transcriptional activator | *SoxR TA or redox-sensitive transcriptional activator | ||
**[[2zhh]] – EcTA <br /> | **[[2zhh]] – EcTA <br /> | ||
**[[2zhg]] – EcTA + DNA<br /> | **[[2zhg]] – EcTA + DNA<br /> | ||
**[[6tf4]] – VcTA C terminal - ''Vibrio cholera'' - NMR<br /> | |||
* | *GlxR TA | ||
**[[ | **[[3r6s]] – CgTA +cAMP – ''Corynebacterium glutamicum'' <br /> | ||
**[[ | **[[4byy]] – CgTA <br /> | ||
*OxyR | *OxyR TA or hydrogen peroxide-inducible genes activator | ||
**[[3t22]], [[3ho7]], [[3uki]] – TA regulatory domain – ''Porphyromonas gingivalis'' <br /> | **[[3t22]], [[3ho7]], [[3uki]] – TA regulatory domain – ''Porphyromonas gingivalis'' <br /> | ||
**[[ | **[[7l4s]] – TA regulatory domain – ''Shewnella oneidensis''<br /> | ||
**[[4x6g]] – PaTA (mutant) | **[[4y0m]] – PaTA regulatory domain <br /> | ||
**[[ | **[[4x6g]], [[4xws]] – PaTA regulatory domain (mutant)<br /> | ||
**[[ | **[[1i69]], [[1i6a]] – EcTA regulatory domain (mutant)<br /> | ||
**[[5x0v]] – VvTA | **[[6g1d]] – CgTA regulatory domain (mutant)<br /> | ||
**[[ | **[[6g1b]], [[6g4r]] – CgTA regulatory domain + H2O2<br /> | ||
**[[5x0v]] – VvTA - ''Vibrio vulnificus''<br /> | |||
**[[5b70]], [[5b7d]], [[5b7h]], [[5x0q]] – VvTA (mutant) <br /> | |||
**[[3jv9]] – NmTA – ''Neisseria meningitidis'' <br /> | |||
*PlcR | *PlcR TA | ||
**[[4fsc]] – BtTA - ''Bacillus thuringiensis'' <br /> | **[[4fsc]] – BtTA - ''Bacillus thuringiensis'' <br /> | ||
**[[2qfc]] – BtTA + | **[[2qfc]] – BtTA + PapR peptide <br /> | ||
**[[3u3w]] – BtTA + DNA + | **[[3u3w]] – BtTA + DNA + PapR peptide <br /> | ||
*VirB transcriptional activator | *VirB TA or virulence regulon transcriptional activator VirB | ||
**[[3vwb]], [[3w2a]], [[3w3c]] – TA core domain + DNA – ''Shigella flexneri''<br /> | **[[3vwb]], [[3w2a]], [[3w3c]] – TA core domain + DNA – ''Shigella flexneri''<br /> | ||
*MafA | *MafA TA | ||
**[[4eot]] – hTA DBD<br /> | **[[4eot]] – hTA DBD<br /> | ||
*CysB transcriptional activator | *CysB TA or Cys regulon transcriptional activator CysB | ||
**[[4gwo]], [[4gxa]], [[4lon]], [[4lp2]] – StTA C terminal – ''Salmonella typhimurium''<br /> | **[[4gwo]], [[4gxa]], [[4lon]], [[4lp2]] – StTA C terminal – ''Salmonella typhimurium''<br /> | ||
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**[[5z4y]], [[5z4z]] – PaTA NTD domain <br /> | **[[5z4y]], [[5z4z]] – PaTA NTD domain <br /> | ||
*HlyU | *HlyU TA | ||
**[[4k2e]], [[4ooi]] – VcTA | **[[4k2e]], [[4ooi]] – VcTA <br /> | ||
**[[3jth]] – VvTA | **[[3jth]] – VvTA <br /> | ||
**[[5znx]] – VvTA + inhibitor<br /> | **[[5znx]] – VvTA + inhibitor <br /> | ||
*ToxR TA | *ToxR TA | ||
**[[6uue]], [[6utc]] – VvTA <br /> | **[[6uue]], [[6utc]] – VvTA <br /> | ||
**[[7nmb]], [[7nn6]] – VcTA - NMR<br /> | |||
**[[8b4b]], [[8b4c]], [[8b4d]], [[8b4e]] – VcTA + DNA<br /> | |||
**[[8alo]] – VcTA + ToxS<br /> | |||
*LysR TA | *LysR TA | ||
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**[[5x0n]] – VvTA (mutant)<br /> | **[[5x0n]] – VvTA (mutant)<br /> | ||
**[[3t1b]], [[3szp]] – VcTA <br /> | **[[3t1b]], [[3szp]] – VcTA <br /> | ||
**[[6yz3]] – PaTA <br /> | **[[6tpr]], [[6z07]], [[6z17]], [[6z5k]], [[6yz3]], [[7o2t]], [[7o2u]] – PaTA + antagonist<br /> | ||
**[[6yiz]], [[7nbw]] – PaTA + agonist<br /> | |||
**[[5z7h]] – SaTA <br /> | **[[5z7h]] – SaTA <br /> | ||
**[[4pzj]] – TA – ''Eggerthella lenta''<br /> | **[[4pzj]] – TA – ''Eggerthella lenta''<br /> | ||
**[[3hhf]] – NmTA | **[[3hhf]], [[3hhg]], [[4ab5]] – NmTA <br /> | ||
**[[3fzj]] – TA – ''Comamonas testosteroni''<br /> | **[[3fzj]] – TA – ''Comamonas testosteroni''<br /> | ||
**[[1ixc]], [[1iz1]] – CnTA – ''Cupriavidus necator''<br /> | |||
**[[5xxp]], [[7d98]] – CnTA + DNA<br /> | |||
**[[1uth]], [[2y7r]], [[5ae4]] – TA – ''Burkholderia cepacia''<br /> | |||
**[[7trv]], [[7trw]] – TA LBD – ''Yersinia pestis''<br /> | |||
**[[7erp]], [[7erq]] – CsTA regulatory domain – ''Cronobacter sakazakii''<br /> | |||
**[[7fdf]] – CsTA regulatory domain (mutant) <br /> | |||
*Aft2 | *Aft2 TA | ||
**[[4lmg]] – yTA + DNA<br /> | **[[4lmg]] – yTA + DNA<br /> | ||
* | *Mga TA | ||
**[[5way]] – SpTA – ''Streptococcus pneumoniae''<br /> | **[[5way]] – SpTA – ''Streptococcus pneumoniae''<br /> | ||
* | *Spt7 TA | ||
**[[6t9k]], [[6t9i]] – yTA in SAGA – Cryo EM<br /> | **[[6t9k]], [[6t9i]] – yTA in SAGA – Cryo EM<br /> | ||
*Quorum-sensing TA | *Quorum-sensing TA or TraR | ||
**[[5l07]] – YeTA – ''Yersinia enterocolitica''<br /> | **[[5l07]] – YeTA – ''Yersinia enterocolitica''<br /> | ||
**[[5l09]] – YeTA + THF derivative<br /> | **[[5l09]] – YeTA + THF derivative<br /> | ||
**[[1l3l]] – AtTA + pheromone + DNA – ''Agrobacterium tumefaciens'' <br /> | |||
**[[1h0m]] – AtTA + auto-inducer + DNA <br /> | |||
*MexT TA | *MexT TA | ||
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*ComR TA | *ComR TA | ||
**[[5juf]] – | **[[5juf]], [[6qer]] – StTA – ''Streptococcus thermophilus''<br /> | ||
**[[5jub]] – StTA + DNA<br /> | |||
* | **[[5fd4]] – TA – ''Streptococcus suis''<br /> | ||
**[[7n10]], [[7n1n]] – SmTA DBD + Prx – ''Streptococcus mutans''<br /> | |||
**[[ | **[[6hu8]] – SvTA – ''Streptococcus vestibularis''<br /> | ||
**[[6hua]] – SvTA + peptide<br /> | |||
*FasR TA | *FasR TA | ||
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**[[6o6p]] – MtTA + DNA – ''Mycobacterium tuberculosis''<br /> | **[[6o6p]] – MtTA + DNA – ''Mycobacterium tuberculosis''<br /> | ||
**[[6o6o]] – MtTA + myristic acid<br /> | **[[6o6o]] – MtTA + myristic acid<br /> | ||
**[[6o6n]] – MtTA + arachinoyl-CoA<br /> | |||
* | |||
* | |||
*ModE TA | *ModE TA | ||
**[[1o7l]], [[1h9s]] – EcTA + Mo <br /> | **[[1o7l]], [[1h9s]] – EcTA + Mo <br /> | ||
**[[1b9m]], [[1b9n]] , [[1h9r]]– EcTA + Ni | **[[1b9m]], [[1b9n]], [[1h9r]] – EcTA + Ni <br /> | ||
*TetR family TA | *TetR family TA | ||
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**[[3cwr]] – TA – ''Rhodspirillum rubrum''<br /> | **[[3cwr]] – TA – ''Rhodspirillum rubrum''<br /> | ||
**[[1z0x]] – EfTA – ''Enterococcus faecalis''<br /> | **[[1z0x]] – EfTA – ''Enterococcus faecalis''<br /> | ||
**[[3c2b]] – AfTA – ''Agrobacterium fabrum''<br /> | **[[3c2b]] – AfTA – ''Agrobacterium fabrum''<br /> | ||
**[[2o7t]] – CgTA <br /> | **[[2o7t]] – CgTA <br /> | ||
**[[2g7s]] – AtTA <br /> | **[[2g7s]] – AtTA <br /> | ||
**[[3gzi]] – TA – ''Shewanella loihica''<br /> | **[[3gzi]] – TA – ''Shewanella loihica''<br /> | ||
**[[2qib]], [[2zcx]], [[7ky1]] – ScTA – ''Streptomyces coelicolor''<br /> | |||
**[[2qib]], [[2zcx]], [[ | |||
**[[2hyt]] – TA – ''Pectobacterium atrosepticum''<br /> | **[[2hyt]] – TA – ''Pectobacterium atrosepticum''<br /> | ||
**[[3cdl]] – PsTA – ''Pseudomonas syringae''<br /> | **[[3cdl]] – PsTA – ''Pseudomonas syringae''<br /> | ||
**[[3kkc]] – | **[[3kkc]] – SaTA – ''Streptococcus agalactiae''<br /> | ||
**[[3nnr]] – TA – ''Marinobacter aquaeolei''<br /> | **[[3nnr]] – TA – ''Marinobacter aquaeolei''<br /> | ||
**[[3on4]] – TA – ''Legionella pneumophila''<br /> | **[[3on4]] – TA – ''Legionella pneumophila''<br /> | ||
**[[3f1b]] – RjTA – ''Rhodococcus jostii''<br /> | **[[3f1b]] – RjTA – ''Rhodococcus jostii''<br /> | ||
**[[3eup]] – TA – ''Cytophaga | **[[3eup]] – TA – ''Cytophaga hutchinsoni''i<br /> | ||
**[[3egq]] – TA – ''Archaeoglobus fulgidus''<br /> | **[[3egq]] – TA – ''Archaeoglobus fulgidus''<br /> | ||
**[[4hku]] – | **[[4hku]] – LmTA – Listeria monocytogenes<br /> | ||
**[[3nrg]], [[3qbm]] – TA – ''Chlotoflexus aurantiacus''<br /> | **[[3nrg]], [[3qbm]] – TA – ''Chlotoflexus aurantiacus''<br /> | ||
**[[6nsr]] – PaTA (mutant) + DNA<br /> | **[[6nsr]] – PaTA (mutant) + DNA<br /> | ||
**[[4jkz]] – MsTA – ''Mycobacterium smegmatis''<br /> | **[[4jkz]] – MsTA – ''Mycobacterium smegmatis''<br /> | ||
**[[6el2]] – SacTA – ''Sulfolobus acidocaldarius''<br /> | **[[6el2]] – SacTA – ''Sulfolobus acidocaldarius''<br /> | ||
**[[6en8]] – SacTA + DNA<br /> | **[[6en8]] – SacTA + DNA<br /> | ||
*TetR/AcrR family TA | |||
**[[2rae]] – RjTA <br /> | |||
**[[3lhq]] – StTA <br /> | |||
**[[3b81]] – CpTA – ''Clostridium acetobutylicum''<br /> | |||
**[[3dcf]] – TA – ''Thermobifida fusca''<br /> | |||
**[[3mvp]] – SmTA <br /> | |||
**[[5d18]], [[5d19]], [[6a4l]], [[6a4w]] – MtTA <br /> | |||
**[[2eh3]] – TA – ''Aquifex aeolicus''<br /> | |||
**[[3vuq]] – TtTA – ''Thermus thermophilus''<br /> | |||
**[[7eqe]] – SgTA – ''Streptococcus griseus''<br /> | |||
**[[7eqf]] – SgTA + ligand<br /> | |||
**[[5gp9]], [[5gpa]] – BhTA – ''Bacillus halodurans''<br /> | |||
**[[5gpc]] – BhTA + DNA <br /> | |||
**[[6g87]] – BdTA – ''Bradyrhizobium diazoefficiens''<br /> | |||
**[[6g8h]] – BdTA + naringenin <br /> | |||
**[[6g8g]] – BdTA + genistein <br /> | |||
*GntR family TA | *GntR family TA | ||
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**[[3l5z]] – BcTA <br /> | **[[3l5z]] – BcTA <br /> | ||
**[[3ddv]] – EfTA <br /> | **[[3ddv]] – EfTA <br /> | ||
**[[3sxy]] – TmTA <br /> | **[[3fms]], [[3sxy]] – TmTA <br /> | ||
**[[3c7j]] – PsTA <br /> | **[[3c7j]] – PsTA <br /> | ||
**[[2p19]] – CgTA <br /> | **[[2di3]], [[2p19]] – CgTA <br /> | ||
**[[3tqn]] – TA – ''Coxiella burnetii''<br /> | **[[3tqn]] – TA –'' Coxiella burnetii''<br /> | ||
**[[6za0]], [[6za3]], [[7za7]] – AfTA <br /> | |||
**[[6z74]], [[6zab]] – AfTA + DNA<br /> | |||
**[[7u5q]] – TA – ''Brucella melitensis''<br /> | |||
**[[6sbs]] – SacTA <br /> | |||
**[[3h5o]] – TA – ''Chromobacterium violaceum'' <br /> | |||
**[[6az6]], [[7b5t]], [[7b5y]], [[7b5w]] – SaTA <br /> | |||
**[[7b5u]] – SaTA + diAMP <br /> | |||
**[[7oz3]] – SaTA + DNA – Cryo EM<br /> | |||
**[[4r1h]] – LmTA <br /> | |||
**[[3ihu]] – TA – ''Ralstonia eutropha'' <br /> | |||
**[[3lhe]] – TA – ''Bacillus anthracis'' <br /> | |||
**[[3f8m]] – MsTA <br /> | |||
*MarR family TA | *MarR family TA or multiple antibiotic resistance protein | ||
**[[3boq]], [[3cjn]], [[3e6m]] – RpTA - ''Ruegeria pomeryi''<br /> | **[[3boq]], [[3cjn]], [[3e6m]] – RpTA - ''Ruegeria pomeryi''<br /> | ||
**[[3s2w]] – TA – ''Methanosarcina mazei'' <br /> | **[[3s2w]] – TA – ''Methanosarcina mazei'' <br /> | ||
**[[2fbk]] – DrTA – ''Deinococcus radiodurans''<br /> | **[[3bpv]] – TA – ''Methanobacterium thermoautotrophicum'' <br /> | ||
**[[2fbk]] – DrTA –'' Deinococcus radiodurans''<br /> | |||
**[[5dd8]] – DrTA (mutant) <br /> | **[[5dd8]] – DrTA (mutant) <br /> | ||
**[[2fa5]] – TA – ''Xanthomonas campestris''<br /> | **[[2fa5]] – TA – ''Xanthomonas campestris''<br /> | ||
**[[5aiq]] – NmTA <br /> | **[[3g3z]], [[5aiq]] – NmTA <br /> | ||
**[[5aip]] – NmTA + hydroxyphenylacetate <br /> | **[[5aip]] – NmTA + hydroxyphenylacetate <br /> | ||
**[[5e1w]] – DmTA – ''Dihalococcoides mccartyi''<br /> | **[[5e1w]] – DmTA – ''Dihalococcoides mccartyi''<br /> | ||
**[[5e1z]], [[5e1x]], [[5e20]] – DmTA + phenol derivative <br /> | **[[5e1z]], [[5e1x]], [[5e20]] – DmTA + phenol derivative <br /> | ||
**[[6c28]] – | **[[6c28]] – RpTA + coumaroyl-CoA – ''Rhodopseudomonas palustris'' <br /> | ||
**[[3fm5]] – RjTA <br /> | **[[3fm5]] – RjTA <br /> | ||
**[[1z91]] – BsTA <br /> | **[[1z91]] – BsTA <br /> | ||
**[[4b8x]] – ScTA <br /> | |||
**[[4yif]] – MtTA <br /> | |||
**[[3vb2]], [[3voe]], [[4jba]] – EcTA <br /> | |||
**[[3vod]] – EcTA (mutant)<br /> | |||
**[[5h3r]] – EcTA (mutant) + DNA<br /> | |||
**[[5eri]] – CdTA – ''Clostridium difficile''<br /> | |||
**[[7dvn]] – TA + effector –'' Paenisporosarcina''<br /> | |||
**[[3u2r]] – TA – ''Planctopirus limnophilus''<br /> | |||
**[[2rdp]] – TA – ''Bacillus stearothermophilus''<br /> | |||
*MerR family TA | *MerR family TA or mercuric resistance operon regulatory protein | ||
**[[3hh0]] – BcTA <br /> | **[[3hh0]] – BcTA <br /> | ||
**[[3gpv]] – BtTA <br /> | **[[3gpv]] – BtTA <br /> | ||
**[[4ua1]], [[4ua2]] – TA – ''Bacillus megaterium''<br /> | |||
**[[5crl]] – PaTA <br /> | |||
**[[5gpe]] – TA – ''Cupriavidus metallidurans''<br /> | |||
**[[3cnb]] – TA – ''Colwellia psychrerythraea'' <br /> | |||
**[[6d90]] – HiTA – ''Haemophilia influenzae''<br /> | |||
**[[5d8c]] – HiTA + DNA <br /> | |||
**[[6xl6]], [[6xla]], [[6xlk]] – EcTA + DNA – Cryo EM<br /> | |||
**[[6xl5]], [[6xl9]], [[6xlj]] – EcTA in RNP complex – Cryo EM<br /> | |||
*AsnC family TA | *AsnC family TA | ||
**[[3i4p]] – AfTA <br /> | **[[3i4p]] – AfTA <br /> | ||
**[[2cg4]] – EcTA <br /> | |||
*AraC family TA | *AraC family TA or arabinose operon regulatory protein | ||
**[[3gra]] – PpTA – ''Pseudomonas putida''<br /> | **[[3gra]] – PpTA – ''Pseudomonas putida''<br /> | ||
**[[3cu5]] – TA – ''Lacnoclostridium phytofermentans''<br /> | **[[3cu5]] – TA – ''Lacnoclostridium phytofermentans''<br /> | ||
**[[5chh]] – PaTA <br /> | **[[5chh]] – PaTA <br /> | ||
**[[2ara]] – EcTA <br /> | |||
**[[1xja]] – EcTA dimerization domain (mutant)<br /> | |||
**[[2k9s]] – EcTA DBD - NMR<br /> | |||
**[[2arc]] – EcTA + arabinose<br /> | |||
**[[2aac]] – EcTA + fucose<br /> | |||
*LacI family TA | *LacI family TA | ||
Line 337: | Line 351: | ||
**[[5zhv]], [[5zi8]], [[5zhc]] – MtTA <br /> | **[[5zhv]], [[5zi8]], [[5zhc]] – MtTA <br /> | ||
**[[5zqh]] – SpTA <br /> | **[[5zqh]] – SpTA <br /> | ||
**[[5x12]] – BsTA <br /> | **[[5x12]], [[7cbv]] – BsTA <br /> | ||
**[[5y8t]] – BsTA + coumaric acid<br /> | **[[5x13]], [[5y8t]] – BsTA + coumaric acid<br /> | ||
**[[5x14]] – BsTA + ferulic acid<br /> | |||
**[[6abq]], [[6abt]] – LmTA <br /> | |||
**[[5dym]] – CdTA <br /> | |||
*TrmB TA | *TrmB TA or tRNA (guanine-N(7)-) methyltransferase | ||
**[[2f5t]] – TA – Thermococcus litoralis<br /> | **[[2f5t]] – TA – ''Thermococcus litoralis''<br /> | ||
**[[3qph]] – PfTA + sucrose – ''Pyrococcus furiosus''<br /> | |||
*IclR TA | *IclR TA | ||
**[[1mkm]] – TmTA <br /> | **[[1mkm]] – TmTA <br /> | ||
**[[2o99]], [[2o9a]] – EcTA C-terminal <br /> | |||
**[[1td5]] – EcTA LBD <br /> | |||
**[[7cuo]] – TA + hydroxybenzoate – ''Microbacterium hydrocarbonoxydans <br /> | |||
'' | |||
*BgaR TA | *BgaR TA | ||
Line 358: | Line 379: | ||
**[[3qpt]] – StTA <br /> | **[[3qpt]] – StTA <br /> | ||
**[[3q5f]] – StTA + DNA <br /> | **[[3q5f]] – StTA + DNA <br /> | ||
**[[4aih]] – YpTA – Yersinia pseudotuberculosis<br /> | **[[4aih]] – YpTA – ''Yersinia pseudotuberculosis''<br /> | ||
**[[4aij]], [[4aik]] – YpTA + DNA <br /> | **[[4aij]], [[4aik]] – YpTA + DNA <br /> | ||
*CouR TA | *CouR TA | ||
**[[5cyv]] – RjTA + coumaroyl-CoA – ''Rhodococcus jostii''<br /> | **[[5cyv]], [[6c28]] – RjTA + coumaroyl-CoA –'' Rhodococcus jostii''<br /> | ||
**[[6c9t]] – RpTA <br /> | |||
**[[6c2s]] – RpTA + DNA <br /> | |||
**[[ | |||
**[[ | |||
*CueR TA | *CueR TA | ||
**[[1q07]], [[1q06]], [[1q05]] – EcTA <br /> | **[[1q07]], [[1q06]], [[1q05]] – EcTA <br /> | ||
*LuxR TA | *LuxR TA | ||
Line 414: | Line 399: | ||
*LuxT TA | *LuxT TA | ||
**[[3ljl]] – VpTA <br /> | **[[3b4s]], [[3ljl]] – VpTA <br /> | ||
*ClgR TA | *ClgR TA or Clp gene regulator | ||
**[[5woq]] – MsTA <br /> | **[[5woq]] – MsTA <br /> | ||
**[[3f51]], [[3f52]] – CgTA <br /> | |||
*LmrR TA | *LmrR TA | ||
Line 426: | Line 412: | ||
**[[6vwe]], [[6do0]] – LlTA + Rh complex<br /> | **[[6vwe]], [[6do0]] – LlTA + Rh complex<br /> | ||
**[[6r1l]] – LlTA + Cu + phenanthroline<br /> | **[[6r1l]] – LlTA + Cu + phenanthroline<br /> | ||
**[[4zzd]] – LlTA + riboflavine<br /> | |||
**[[6fuu]] – LlTA + heme<br /> | |||
*MvfR TA | *MvfR TA | ||
**[[6z17]] – PaTA <br /> | **[[4jvc]], [[6z17]] – PaTA <br /> | ||
**[[6z5k]] – PaTA + inhibitor<br /> | **[[4jvd]], [[4jvi]], [[6q7u]], [[6q7v]], [[6tpr]], [[6yiz]], [[6yz3]], [[6z07]], **[[6z17]], [[6z5k]], [[7nbw]], [[7o2t]], [[7o2u]] – PaTA + inhibitor<br /> | ||
**[[6b8a]], [[6q7w]] – PaTA LBD 94-295 + inhibitor<br /> | |||
*HdfR TA | *HdfR TA | ||
Line 439: | Line 428: | ||
**[[4p9f]] – EcTA <br /> | **[[4p9f]] – EcTA <br /> | ||
**[[4ab5]] – MnTA <br /> | |||
**[[4ab6]] – MnTA (mutant)<br /> | |||
*MetR TA | *MetR TA | ||
Line 444: | Line 435: | ||
**[[5fo5]] – EcTA DBD<br /> | **[[5fo5]] – EcTA DBD<br /> | ||
* | *YvhJ TA | ||
**[[3nxh]] – BsTA <br /> | **[[3nxh]] – BsTA <br /> | ||
Line 450: | Line 441: | ||
*CgmR TA | *CgmR TA | ||
**[[2zoy]] – CgTA <br /> | **[[2yve]], [[2zoy]] – CgTA <br /> | ||
**[[2zoz]] – CgTA + ethidium<br /> | **[[2zoz]] – CgTA + ethidium<br /> | ||
**[[2yvh]] – CgTA + DNA<br /> | |||
*AraR TA | *AraR TA or arabinose metabolism transcriptional repressor | ||
**[[5bs6]] – | **[[5bs6]], [[5dd4]] – BtTA – ''Bacterioides thetaiotaomicron''<br /> | ||
**[[3tb6]] – BtTA effector-binding domain 71-362 + arabinose<br /> | |||
**[[5ddg]] – BtTA + DNA<br /> | |||
**[[5deq]] – BtTA 1-225 + arabinose<br /> | |||
**[[4egy]], [[4egz]], [[4h0e]], [[5d4r]], [[5d4s]] – BsTA DBD 1-68 + DNA<br /> | |||
*CarH TA | *CarH TA or light-dependent transcriptional regulator | ||
**[[5c8d]] – TtTA + | **[[5c8a]], [[5c8d]], [[5c8e]], [[5c8f]] – TtTA + cobalamin derivative<br /> | ||
*ZitR TA | *ZitR TA or zinc transport transcriptional regulator | ||
**[[5yhy]], [[5yi0]], [[5yi1]] – LlTA (mutant)<br /> | **[[5yhx]] – LlTA <br /> | ||
**[[5yhy]], [[5yhz]], [[5yi0]], [[5yi1]], [[6fi9]] – LlTA (mutant)<br /> | |||
**[[5yi2]] – LlTA + DNA<br /> | |||
**[[5yi3]] – LlTA (mutant) + DNA<br /> | |||
*LsrR TA | *LsrR TA | ||
Line 470: | Line 469: | ||
**[[4l4z]], [[4l50]], [[4l51]], [[4l5i]], [[4l5j]] – EcTA + ligand<br /> | **[[4l4z]], [[4l50]], [[4l51]], [[4l5i]], [[4l5j]] – EcTA + ligand<br /> | ||
*HTH-type TA | *TA II | ||
**[[8igr]] – EcTA in transcription activation complex – Cryo EM<br /> | |||
*TA RAMA | |||
**[[7bef]], [[7beg]] – EcTA in transcription activation complex – Cryo EM<br /> | |||
*PrfA TA or listeriolysin positive regulatory factor A | |||
**[[1omi]], [[2beo]] – LmTA <br /> | |||
**[[2bgc]], [[6qvy]], [[6qvz]], [[6qw1]], [[6qw2]] – LmTA (mutant) <br /> | |||
**[[5lej]], [[5x6d]] – LmTA + DNA<br /> | |||
**[[5lek]], [[6qwf]], [[6qwh]], [[6qwk]], [[6qwm]] – LmTA (mutant) + DNA <br /> | |||
**[[5f1r]], [[6eut]], [[6euu]], [[6euz]], [[6ev0]], [[6exk]], [[6exl]], [[6exm]], [[6t5i]] – LmTA + inhibitor<br /> | |||
**[[5lrs]], [[5x6e]] – LmTA + DNA + glutathione<br /> | |||
**[[5lrr]] – LmTA + glutathione<br /> | |||
**[[6hck]] – LmTA + peptide<br /> | |||
*HTH-type TA or helix-turn-helix-type | |||
**[[2uxu]] – PpTA TtgR + naringenin<br /> | **[[2uxu]] – PpTA TtgR + naringenin<br /> | ||
**[[2uxh]] – PpTA TtgR + quercetin<br /> | **[[2uxh]] – PpTA TtgR + quercetin<br /> | ||
**[[2uxi]] – PpTA TtgR + phloretin<br /> | **[[2uxi]] – PpTA TtgR + phloretin<br /> | ||
**[[6ugl]], [[6kju]] – VcTA + pyrazine derivative<br /> | **[[6ugl]], [[6kju]] – VcTA + pyrazine derivative<''br /> | ||
**[[2bv6]] – SaTA MgrA –'' Staphylococcus aureus<br /> | |||
**[[5hs5]], [[5ywj]], [[6k8e]] – SaTA SarX<br /> | |||
**[[3hrm]], [[3hse]] – SaTA SarZ <br /> | **[[3hrm]], [[3hse]] – SaTA SarZ <br /> | ||
**[[6r1p]] – MtTA EthR <br /> | **[[6r1p]] – MtTA EthR <br /> | ||
**[[1ysq]] – EcTA YiaJ <br /> | **[[1ysq]] – EcTA YiaJ <br /> | ||
**[[2qop]], [[3bcg]] – EcTA AcrR<br /> | |||
**[[6ldi]], [[6xh7]], [[6xh8]], [[7c17]] – EcTA CueR in transcription activation complex – Cryo EM <br /> | |||
**[[4wls]], [[4wlw]] – EcTA CueR + DNA<br /> | |||
**[[4x1e]] – EcTA RutR<br /> | |||
**[[4xk4]], [[4jyk]] – EcTA RutR + uracil derivative<br /> | |||
**[[2hxr]] – EcTA CynR LBD <br /> | |||
**[[3hfu]] – EcTA CynR LBD + N3<br /> | |||
**[[8bob]] – EcTA MalT + MalY – Cryo EM <br /> | |||
**[[2gfn]] – RjTA Rha1 <br /> | **[[2gfn]] – RjTA Rha1 <br /> | ||
**[[1i1g]] – | **[[1i1g]] – PfTA LrpA <br /> | ||
**[[7cla]] – TA SkgA – ''Caulobacter vibrioides''<br /> | **[[7cla]] – TA SkgA – ''Caulobacter vibrioides''<br /> | ||
**[[7bzd]] – BsTA HxlR <br /> | |||
**[[7bze]] – BsTA HxlR (mutant)<br /> | |||
**[[7bzg]] – BsTA HxlR + DNA<br /> | |||
**[[7amn]], [[7amt]] – TA LuxR + DNA – ''Vibrio alginolyticus''<br /> | |||
**[[2dtz]], [[2hq5]] – SaTA QacR (mutant)<br /> | |||
**[[3bqz]], [[3br0]], [[3btc]], [[3btl]] – SaTA QacR (mutant) + malachite green<br /> | |||
**[[3br1]], [[3br2]], [[3bt9]], [[3btj]] – SaTA QacR (mutant) + dequalinium<br /> | |||
**[[3bti]] – SaTA QacR (mutant) + berberine<br /> | |||
**[[1qvu]],[[3br3]], [[3pm1]] – SaTA QacR (mutant) + ethidium<br /> | |||
**[[1rkw]], [[1rpw]] – SaTA QacR (mutant) + pentamadine<br /> | |||
**[[1qvt]] – SaTA QacR (mutant) + proflavine<br /> | |||
**[[3br5]], [[3br6]] – SaTA QacR (mutant) + rhodamine<br /> | |||
**[[2gby]] – SaTA QacR (mutant) + berenil<br /> | |||
**[[2g0e]] – SaTA QacR (mutant) + drug<br /> | |||
**[[3k1n]] – AbTA BenM – Acinetobacter baylyi<br /> | |||
**[[3k1p]] – AbTA BenM (mutant)<br /> | |||
**[[2f6g]], [[2f6p]], [[2f97]] – AbTA BenM effector-binding domain 81-304<br /> | |||
**[[3m1e]] – AbTA BenM DBD 1-87<br /> | |||
**[[4ihs]], [[4iht]] – AbTA BenM effector-binding domain + DNA <br /> | |||
**[[2f78]], [[2f7a]], [[2f7c]] – AbTA BenM effector-binding domain + effector <br /> | |||
**[[2h9b]] – EfTA BenM (mutant)<br /> | |||
**[[2f7b]], [[2h98]] – AbTA CatM effector-binding domain <br /> | |||
**[[3glb]] – AbTA CatM effector-binding domain (mutant)<br /> | |||
**[[2f7c]] – AbTA CatM effector-binding domain + muconate<br /> | |||
**[[2cfx]] – BsTA LrpC<br /> | |||
**[[2gqq]] – EcTA LrpC<br /> | |||
**[[6d2s]], [[6cyj]], [[6cz6]], [[6cyy]] – MtTA PrpR<br /> | |||
**[[2pju]] – EcTA PrpR<br /> | |||
**[[5t4k]], [[5t4j]], [[5t4l]], [[5x03]] – BsTA GabR EBO domain + pyridine derivative<br /> | |||
**[[4mgr]], [[4nob]], [[4tv7]] – BsTA GabR <br /> | |||
**[[6uxz]] – BsTA GabR + agonist<br /> | |||
**[[5u9e]], [[5u93]] – TA RhaR regulatory domain – ''Bacteria latreille''<br /> | |||
**[[5z49]] – TA CmpR effector-binding domain + ribulose bisphosphate – ''Synechococcus elongatus''<br /> | |||
**[[3kos]] – CfTA AmpR effector binding domain – ''Citrobacter freundii''<br /> | |||
**[[3kot]] – CfTA AmpR effector binding domain (mutant)<br /> | |||
**[[4wkm]] – CfTA AmpR effector binding domain + peptide<br /> | |||
**[[5mmh]] – PaTA AmpR effector binding domain <br /> | |||
}} | }} | ||
[[Category:Topic Page]] | [[Category:Topic Page]] |
Latest revision as of 11:13, 1 January 2024
3D Structures of transcriptional activator3D Structures of transcriptional activator
Updated on 01-January-2024 - For a general description of the protein see Transcriptional activator
- BgaR TA
- SlyA TA
- CouR TA
- CueR TA
- LuxR TA
- LuxT TA
- ClgR TA or Clp gene regulator
- LmrR TA
- MvfR TA
- HdfR TA
- 6wn5 – TA – Klebsiella pneumoniae
- 6wn5 – TA – Klebsiella pneumoniae
- McbR TA
- MetR TA
- 5fo5 – EcTA DBD
- 5fo5 – EcTA DBD
- YvhJ TA
- 3nxh – BsTA
- 3nxh – BsTA
- CgmR TA
- AraR TA or arabinose metabolism transcriptional repressor
- CarH TA or light-dependent transcriptional regulator
- ZitR TA or zinc transport transcriptional regulator
- LsrR TA
- TA II
- 8igr – EcTA in transcription activation complex – Cryo EM
- 8igr – EcTA in transcription activation complex – Cryo EM
- TA RAMA
- PrfA TA or listeriolysin positive regulatory factor A
- HTH-type TA or helix-turn-helix-type
- 2uxu – PpTA TtgR + naringenin
- 2uxh – PpTA TtgR + quercetin
- 2uxi – PpTA TtgR + phloretin
- 6ugl, 6kju – VcTA + pyrazine derivative<br />
- 2bv6 – SaTA MgrA – Staphylococcus aureus
- 5hs5, 5ywj, 6k8e – SaTA SarX
- 3hrm, 3hse – SaTA SarZ
- 6r1p – MtTA EthR
- 1ysq – EcTA YiaJ
- 2qop, 3bcg – EcTA AcrR
- 6ldi, 6xh7, 6xh8, 7c17 – EcTA CueR in transcription activation complex – Cryo EM
- 4wls, 4wlw – EcTA CueR + DNA
- 4x1e – EcTA RutR
- 4xk4, 4jyk – EcTA RutR + uracil derivative
- 2hxr – EcTA CynR LBD
- 3hfu – EcTA CynR LBD + N3
- 8bob – EcTA MalT + MalY – Cryo EM
- 2gfn – RjTA Rha1
- 1i1g – PfTA LrpA
- 7cla – TA SkgA – Caulobacter vibrioides
- 7bzd – BsTA HxlR
- 7bze – BsTA HxlR (mutant)
- 7bzg – BsTA HxlR + DNA
- 7amn, 7amt – TA LuxR + DNA – Vibrio alginolyticus
- 2dtz, 2hq5 – SaTA QacR (mutant)
- 3bqz, 3br0, 3btc, 3btl – SaTA QacR (mutant) + malachite green
- 3br1, 3br2, 3bt9, 3btj – SaTA QacR (mutant) + dequalinium
- 3bti – SaTA QacR (mutant) + berberine
- 1qvu,3br3, 3pm1 – SaTA QacR (mutant) + ethidium
- 1rkw, 1rpw – SaTA QacR (mutant) + pentamadine
- 1qvt – SaTA QacR (mutant) + proflavine
- 3br5, 3br6 – SaTA QacR (mutant) + rhodamine
- 2gby – SaTA QacR (mutant) + berenil
- 2g0e – SaTA QacR (mutant) + drug
- 3k1n – AbTA BenM – Acinetobacter baylyi
- 3k1p – AbTA BenM (mutant)
- 2f6g, 2f6p, 2f97 – AbTA BenM effector-binding domain 81-304
- 3m1e – AbTA BenM DBD 1-87
- 4ihs, 4iht – AbTA BenM effector-binding domain + DNA
- 2f78, 2f7a, 2f7c – AbTA BenM effector-binding domain + effector
- 2h9b – EfTA BenM (mutant)
- 2f7b, 2h98 – AbTA CatM effector-binding domain
- 3glb – AbTA CatM effector-binding domain (mutant)
- 2f7c – AbTA CatM effector-binding domain + muconate
- 2cfx – BsTA LrpC
- 2gqq – EcTA LrpC
- 6d2s, 6cyj, 6cz6, 6cyy – MtTA PrpR
- 2pju – EcTA PrpR
- 5t4k, 5t4j, 5t4l, 5x03 – BsTA GabR EBO domain + pyridine derivative
- 4mgr, 4nob, 4tv7 – BsTA GabR
- 6uxz – BsTA GabR + agonist
- 5u9e, 5u93 – TA RhaR regulatory domain – Bacteria latreille
- 5z49 – TA CmpR effector-binding domain + ribulose bisphosphate – Synechococcus elongatus
- 3kos – CfTA AmpR effector binding domain – Citrobacter freundii
- 3kot – CfTA AmpR effector binding domain (mutant)
- 4wkm – CfTA AmpR effector binding domain + peptide
- 5mmh – PaTA AmpR effector binding domain
- 2uxu – PpTA TtgR + naringenin