Heat Shock Protein structures

3D Structures of Heat Shock Proteins3D Structures of Heat Shock Proteins

Updated on 01-May-2023

  • Hsp60 - the large subunit of the chaperonin molecule GroEL
    • 3los – MmHsp60 - GroEL – Methanococcus maripaludis – closed state
    • 3iyf - MmHsp60 - GroEL – open state
    • 3e76 – EcHsp60 – GroEL+Tl ion – Escherichia coli
    • 2nwc, 1oel, 1grl, 1la1, 7v98 - EcHsp60 – GroEL
    • 2eu1, 7v9r - EcHsp60 (mutant) – GroEL
    • 2cgt - EcHsp60 – GroEL+ADP+capsid assembly protein Gp31
    • 2c7c, 2c7d - EcHsp60 – GroEL+GroES – cryo EM
    • 1gr5 - EcHsp60 – GroEL – cryo EM
    • 1gru - EcHsp60 – GroEL+ATP+GroES+ADP – cryo EM
    • 1dkd - EcHsp60 – GroEL apical (top) domain (146 amino acids)+12-mer peptide
    • 1dk7, 1jon - EcHsp60 – GroEL apical domain
    • 1kid - EcHsp60 (mutant) – GroEL apical domain
    • 1srv - TtHsp60 – GroEL apical domain
    • 4v4o - TtHsp60 – GroEL+GroES
    • 1ass, 1asx - Hsp60 – GroEL apical domain – Thermoplasma acidophilum
  • Hsp65
    • 3rtk – MtHsp65 – Mycobacterium tuberculosis
  • Hsp70 – 3 domains: N-terminus ATPase hydrolyzes ATP to ADP (NBD) residues 1-380; hydrophobic amino acid binding domain (SBD) residues 381-564: C-terminus lid domain (CT) residues 534-641.
  • Hsp70 family protein 5 or endoplasmic reticulum chaperone BIP
    • 6cz1, 6dfm, 6dfo, 6do2, 6dws - hBIP ATPase domain + adenosine derivative 26-407
    • 6hab - haBIP (mutant) - hamster
    • 6h9u, 6ha7 - haBIP + mesencephalic atrocyte-derived neurotrophic factor - hamster
  • DnaK or chaperone protein DnaK (Hsp70 from E. coli) Domains: NBD 1-383; SBD 389-607
  • Hsp75 or TRAP-1

Hsp90-a NTD+linker residues 1-293

    • 7ur3 - hHsp90 + inhibitor
  • Hsp90-α MD
  • Hsp90-α CT
  • Hsp90-α NTD + MD
    • 2o1w - dHsp90B1 NTD+MD
  • Hsp90-α MD + CT residues 293-732
  • Hsp90-α full length 1-732
    • 2qf6 - hHsp90 + antigen
    • 5fwk, 5fwl, 5fwm, 5fwp – hHsp90 + CDC37 + CDK4
    • 7l7j - hHsp90 + P23 + ANP – Cryo EM
    • 7krj - hHsp90 + GR + P23 + ATP – Cryo EM
    • 8h77 - hHsp90 + AhR + P23 + XAP2 + ADP – Cryo EM
    • 7l7i - hHsp90 + FKBP51 + P23 + ANP – Cryo EM
    • 7kw7 - hHsp90 + Hsp70 + GR + STI1 + ADP – Cryo EM
    • 2o1u – dHsp90B1+AMPPNP
    • 2o1v - dHsp90B1+ADP
    • 1y4s, 1y4u, 2iop, 2ior - EcHsp90+ADP
    • 2ioq - EcHsp90
  • Hsp90-β
    • 8eob - hHsp90 – Cryo EM
    • 6n8w - hHsp90 NTD
    • 5fwk, 5fwl, 5fwm, 5fwp – hHsp90 + CDC37 + CDK4
    • 1uym, 6n8y, 7ulj - hHsp90 NTD+ purine inhibitor
    • 5uc4, 5uch, 5uci, 5ucj, 4o04, 4o05, **4o07 - hHsp90-b NTD + inhibitor
    • 3nmq - hHsp90 NTD+pyrimidine derivative
    • 3pry – hHsp90 MD
    • 7zub - hHsp90 + AIP + AH receptor + ADP - Cryo EM
    • 8e0a - hHsp90 + AIPL1 + ANP – Cryo EM
    • 7z37, 7z38 - hHsp90 + Cdc37 + RAF-1 – Cryo EM
    • 8gae - hHsp90 + Cdc37 + RAF-1 + PP5 – Cryo EM
    • 7zr0 - hHsp90 + Cdc37 + BRAF – Cryo EM
    • 7zr5, 7zr6 - hHsp90 + Cdc37 + BRAF + PP5 – Cryo EM
    • 7y04 - mHsp90 + AH receptor + P23 + ADP - mouse - Cryo EM
  • Hsp82 is the yeast equivalent of Hsp90 in mammals
  • Hsp100 are named ClpA or ClpB or ClpC or ClpL or ClpP
    • 1r6b, 1ksf – EcClpA (mutant)
    • 1r6c, 1k6k – EcClpA N-terminal
    • 1r6o, 1r6q – EcClpA N-terminal + ClpS
    • 1mg9, 1lzw, 1mbu, 1mbv, 1mbx – EcClpA + YLJA
    • 6w1z, 6w20, 6w21, 6w22, 6w23, 6w24 – EcClpA + RepA + GFP + ADP + ATP – Cryo EM
    • 6uqe, 6uqo – EcClpA + ClpP + RepA + GFP + ADP + ATPgS – Cryo EM
    • 4ciu - EcClpB (mutant)
    • 4d2u, 4d2x, 4d2q - EcClpB – Cryo EM
    • 5og1, 5ofo - EcClpB + ATPgS – Cryo EM
    • 6qs8, 6qs7, 6qs6, 6og3 - EcClpB (mutant) + casein – Cryo EM
    • 6og2 - EcClpB (mutant) + ADP – Cryo EM
    • 6og1 - EcClpB (mutant) + ADP + ATPgS – Cryo EM
    • 6qs4 - EcClpB + casein + ADP + ATPgS – Cryo EM
    • 6rn4 - EcClpB (mutant) + casein + ATPgS – Cryo EM
    • 6oax, 6oay - EcClpB (mutant) + casein + ADP + ATPgS – Cryo EM
    • 1khy – EcClpB NTD
    • 1jbk – EcClpB nucleotide binding domain 1
    • 1yg6 – EcClpP
    • 1yg8, 3hln – EcClpP (mutant)
    • 2fzs, 7mk5 – EcClpP + inhibitor
    • 6nb1 – EcClpP + activator
    • 3mt6 – EcClpP + Adep1
    • 6wr2, 6wsg – EcClpP + ClpX – Cryo EM
    • 6wrf – EcClpP + ClpX + GFP – Cryo EM
    • 8et3 – EcClpP + ClpX + GFP + SSPB – Cryo EM
    • 4iod, 4irf - PfClpB
    • 1qvr - TtClpB
    • 4fct - TtClpB CT
    • 4lj4 - TtClpB nucleotide binding domain 2
    • 4hse - TtClpB nucleotide binding domain 1 + ADP
    • 4lj5 - TtClpB nucleotide binding domain 2 + ADP
    • 4lj6 - TtClpB nucleotide binding domain 2 + AMPPCP
    • 4lj9, 4lja - TtClpB nucleotide binding domain 2 (mutant) + AMPPCP
    • 4lj8 - TtClpB nucleotide binding domain 2 (mutant) + ADP
    • 4lj7 - TtClpB nucleotide binding domain 2 (mutant) + ADP derivative
    • 4fcv, 4fcw, 4fd2 - TtClpB CT (mutant)
    • 3zri - VcClpB NTD – Vibrio cholerae
    • 3zrj - VcClpB NTD + peptide
    • 6ed3 - MtClpB – Cryo EM
    • 6w6e - MtClpB + ADP + ATPgS – Cryo EM
    • 6dju, 6djv - MtClpB + casein + ATPgS – Cryo EM
    • 6em8, 6em9 - SaClpC – Cryo EM
    • 6emw - SaClpC + MecA – Cryo EM
    • 6pba, 6pbq - MtClpC NTD
    • 6pbs - MtClpC NTD + ecumicin
    • 6cn8 - MtClpC NTD + rufomycin
    • 6lsy - SpClpL – Cryo EM
    • 6lt4 - SpClpL + ATPgS – Cryo EM
    • 7m1l, 7m1m – ClpP2 – Pseudomonas aeruginosa
    • 6cfd – ClpP + antibiotic – Enterococcus faecium
    • 7tfm – ClpP N-domain – Leishmania mexicana
  • Hsp101
  • Hsp104
    • 5kne, 6n8z, 6n8v, 6n8t – yHsp104 - Cryo EM
    • 6ahf – yHsp104 (mutant) – Cryo EM
    • 5u2u, 6amn, 5wbw – yHsp104 NTD
    • 5vy8 – yHsp104 + ADP
    • 5vy9, 5vya – yHsp104 + casein
    • 5vjh – yHsp104 + casein + ATP-γ-S
    • 5u2l – CaHsp104 NTD – Candida albicans
    • 6d00 – CtHsp104 – Calcarisporiella thermophila - Cryo EM
    • 6azy – CtHsp104 (mutant)
    • 5zui – ChtHsp104 – Chaetomium thermophilum
    • 7cg3 – ChtHsp104 - Cryo EM
    • 5d4w – ChtHsp104 (mutant)
  • Hsp110 in mammals is named Sse1, Sse2 in yeast
    • 6gfa – hHsp110 + ATP
    • 3d2e, 3d2f, 3c7n – ySse1+Hsc70
    • 2qxl – ySse1
    • 2llv – ySti1 domain 1 – NMR
    • 2llw – ySti1 domain 2 – NMR
    • 3upv – ySti1 TPR repeats 7-9 + ySse1 peptide
    • 3uq3 - ySti1 TPR repeats 4-9 + peptide
    • 5z8q, 5z8i – ySsa1 SBD - NMR
  • HspA5 or Grp78 or Endoplasmic reticulum chaperone BIP or 78 kDa glucose-related protein; Domains – NBD 26-407; SBD 418-637
  • HspQ
  • Hsp DegP or Periplasmic serine endoprotease DegP; Domains PDZ1 38-385; PDZ2 400-474
  • Heat shock cognate protein (Hsc)
  • Hsc20
  • Hsc70
  • Hsc82
    • 6xlc - yHsc82 + ANP
    • 6xlh - yHsc82 MD+co-chaperone AHA1 + ADP + ATPgS
    • 6xld, 6xle, 6xlf - yHsc82 MD+co-chaperone AHA1 + ANP
    • 6xlb - yHsc82 MD+co-chaperone AHA1 + ANP – Cryo EM
    • 6xlg - yHsc82 MD+co-chaperone AHA1 + ATPgS
  • Hsc90

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Michal Harel, Jaime Prilusky, Joel L. Sussman