Heat Shock Protein structures: Difference between revisions

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**[[4ylb]], [[4ylc]] - SsHsp20 (mutant)<br />
**[[4ylb]], [[4ylc]] - SsHsp20 (mutant)<br />
**[[5z81]] – VcHsp15 – ''Vibrio cholerae''<br />
**[[5z81]] – VcHsp15 – ''Vibrio cholerae''<br />
**[[4i2n]] – VcHsp31<br />
**[[3bbu]] – EcHsp15 - ''Escherichia coli'' – Cryo-EM<br />
**[[3bbu]] – EcHsp15 - ''Escherichia coli'' – Cryo-EM<br />
**[[1dm9]] – EcHsp15<br />
**[[8ap4]] – EcHsp15 in 50S ribosome – Cryo-EM<br />
**[[1ons]] – EcHsp31<br />
**[[1ons]] – EcHsp31<br />
**[[3gla]], [[3gt6]], [[3guf]]  – Hsp – ''Xanthomonas axonopodis''<br />
**[[3gla]], [[3gt6]], [[3guf]]  – Hsp – ''Xanthomonas axonopodis''<br />
**[[3vqk]] – StHsp14 – ''Sulfolobus tokodaii''<br />
**[[3aac]], [3vqk]] – StHsp14 – ''Sulfolobus tokodaii''<br />
**[[3vql]], [[3vqm]] – StHsp14 (mutant)<br />
**[[3aab]], [[3vql]], [[3vqm]] – StHsp14 (mutant)<br />
**[[3w1z]] – Hsp16 – ''Schizosacchromyces pombe''<br />
**[[3w1z]] – Hsp16 – ''Schizosacchromyces pombe''<br />
**[[5j7n]] – Hsp – ''Xylella fastidiosa''<br />
**[[5j7n]] – Hsp – ''Xylella fastidiosa''<br />
**[[6l6m]] – Hsp18.5 – ''Entamoeba histolytica''<br />
**[[4fei]] – Hsp17.7 – ''Deinococcus radiodurans''<br />
**[[1shs]], [[4eld]], [[4i88]] – Hsp – ''Methanococcus jannaschii''<br />
**[[1shs]], [[4eld]], [[4i88]] – Hsp – ''Methanococcus jannaschii''<br />
**[[2bol]] – Hsp – ''Taenia saginata''<br />
**[[2bol]] – Hsp – ''Taenia saginata''<br />
Line 45: Line 50:
*Hsp33
*Hsp33


**[[3kkl]] – yHsp33 <br />
**[[1hw7]], [[3m7m]] – EcHsp33 NTD <br />
**[[1hw7]], [[3m7m]] – EcHsp33 NTD <br />
**[[1i7f]] – EcHsp33 chaperone domain (mutant)<br />
**[[1i7f]] – EcHsp33 chaperone domain (mutant)<br />
Line 69: Line 75:


**[[2qld]] – hHsp40 residues 158-340<br />
**[[2qld]] – hHsp40 residues 158-340<br />
**[[1hdj]], [[2ctq]], [[6iws]] – hHsp40 J domain 1-76 - NMR<br />
**[[1hdj]], [[2ctq]], [[2lgw]], [[2m6y]], [[6iws]] – hHsp40 J domain 1-76 - NMR<br />
**[[6byr]] – hHsp40 J domain 1-70 + CAMP-dependent protein kinase<br />
**[[6z5n]] – hHsp40 1-110 – NMR<br />
**[[6z5n]] – hHsp40 1-110 – NMR<br />
**[[6cgh]] – hHsp40 346-432 – NMR<br />
**[[6cgh]] – hHsp40 346-432 – NMR<br />
**[[6u3r]], [[6u3s]] – hHsp40 1-127+CT – NMR<br />
**[[6u3r]], [[6u3s]] – hHsp40 1-127+CT – NMR<br />
**[[7jsq]] – hHsp40 CT – NMR<br />
**[[7jsq]] – hHsp40 CT – NMR<br />
**[[7ndx]] – hHsp40 CT + NudC peptide<br />
**[[7ciz]], [[7cj0]] – hHsp40 CT + DNA replication licensing factor + histone H3.4 + histone H4<br />
**[[7ciz]], [[7cj0]] – hHsp40 CT + DNA replication licensing factor + histone H3.4 + histone H4<br />
**[[6jmg]] – DnaJ + GTP - frog<br />
**[[6jmg]] – DnaJ + GTP - frog<br />
Line 90: Line 98:
*Hsp47
*Hsp47


**[[3zha]] – dHsp47 + collagen peptide - dog<br />
**[[4au4]] – dHsp47 - dog<br />
**[[3zha]] – dHsp47 + collagen peptide<br />


* Hsp60 mitochondrial
* Hsp60 mitochondrial
**[[7azp]] – hHsp60 – Cryo EM<br />
**[[7azp]], [[7l7l]], [[7l7s]] – hHsp60 – Cryo EM<br />
**[[4pj1]], [[6ht7]] – hHsp60 + hHsp10<br />
**[[4pj1]], [[6ht7]] – hHsp60 + hHsp10 + ADP<br />
**[[6mrc]], [[6mrd]] – hHsp60 + hHsp10 + ADP – Cryo EM<br />
**[[6mrc]], [[6mrd]] – hHsp60 + hHsp10 + ADP – Cryo EM<br />


Line 103: Line 112:
**[[3iyf]]  - MmHsp60 - GroEL – open state<br />
**[[3iyf]]  - MmHsp60 - GroEL – open state<br />
**[[3e76]] – EcHsp60 – GroEL+Tl ion – ''Escherichia coli''<br />
**[[3e76]] – EcHsp60 – GroEL+Tl ion – ''Escherichia coli''<br />
**[[2nwc]], [[1oel]], [[1grl]], [[1la1]] - EcHsp60 – GroEL<br />
**[[2nwc]], [[1oel]], [[1grl]], [[1la1]], [[7v98]] - EcHsp60 – GroEL<br />
**[[2eu1]] - EcHsp60 (mutant) – GroEL<br />
**[[2eu1]], [[7v9r]] - EcHsp60 (mutant) – GroEL<br />
**[[2cgt]] - EcHsp60 – GroEL+ADP+capsid assembly protein Gp31<br />
**[[2cgt]] - EcHsp60 – GroEL+ADP+capsid assembly protein Gp31<br />
**[[2c7c]], [[2c7d]] - EcHsp60 – GroEL+GroES – cryo EM<br />
**[[2c7c]], [[2c7d]] - EcHsp60 – GroEL+GroES – cryo EM<br />
Line 115: Line 124:
**[[4v4o]] - TtHsp60 – GroEL+GroES <br />
**[[4v4o]] - TtHsp60 – GroEL+GroES <br />
**[[1ass]], [[1asx]] - Hsp60 – GroEL apical domain – ''Thermoplasma acidophilum''<br />
**[[1ass]], [[1asx]] - Hsp60 – GroEL apical domain – ''Thermoplasma acidophilum''<br />
* Hsp65
**[[3rtk]] – MtHsp65 – ''Mycobacterium tuberculosis''<br />


* Hsp70 – 3 domains: N-terminus ATPase hydrolyzes ATP to ADP (NBD) residues 1-380; hydrophobic amino acid binding domain (SBD) residues 381-564: C-terminus lid domain (CT) residues 534-641.  
* Hsp70 – 3 domains: N-terminus ATPase hydrolyzes ATP to ADP (NBD) residues 1-380; hydrophobic amino acid binding domain (SBD) residues 381-564: C-terminus lid domain (CT) residues 534-641.  
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**[[6s02]] – PfHsp70 NTD+ADP <br />
**[[6s02]] – PfHsp70 NTD+ADP <br />
**[[7ooe]], [[7oog]], [[7ooh]], [[7p31]] – PfHsp70 NTD+AMP derivative + inhibitor <br />
**[[7ooe]], [[7oog]], [[7ooh]], [[7p31]] – PfHsp70 NTD+AMP derivative + inhibitor <br />
**[[7nqr]], [[7nqs]], [[7nqu]], [[7nqz]] - PfHsp70 NBD + inhibitor<br />
**[[6zhi]] - PfHsp70 CT + peptide<br />
**[[6zhi]] - PfHsp70 CT + peptide<br />


Line 161: Line 175:


**[[4b9q]] - EcDnaK NBD + SBD + ATP<br />
**[[4b9q]] - EcDnaK NBD + SBD + ATP<br />
**[[7ko2]], [[7krt]], [[7kru]], [[7krv]] - EcDnaK (mutant) + ATP<br />
**[[5oow]] - EcDnaK + AMPPCP<br />
**[[5oow]] - EcDnaK + AMPPCP<br />
**[[5nro]] – EcDnaK (mutant) + DnaJ<br />
**[[5nro]] – EcDnaK (mutant) + DnaJ<br />
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**[[1q5l]] - EcDnaK SBD + peptide – NMR<br />
**[[1q5l]] - EcDnaK SBD + peptide – NMR<br />
**[[3dpp]], [[3dpq]], [[3dpo]], [[1dky]], [[3qnj]], [[4e81]], [[4ezn]], [[4ezo]], [[4ezp]], [[4ezq]], [[4ezr]], [[4ezs]], [[4ezt]], [[4ezu]], [[4ezv]], [[4ezw]], [[4ezx]], [[4ezy]], [[4ezz]], [[4f00]], [[4hy9]], [[4hyb]], [[4jwc]], [[4jwd]], [[4jwe]], [[4jwi]], [[4r5i]], [[4f01]], [[7jmm]], [[7jn8]], [[7jn9]], [[7jne]], [[7n6j]], [[7n6k]], [[7n6l]], [[7n6m]] – EcDnaK SBD + peptide<br />
**[[3dpp]], [[3dpq]], [[3dpo]], [[1dky]], [[3qnj]], [[4e81]], [[4ezn]], [[4ezo]], [[4ezp]], [[4ezq]], [[4ezr]], [[4ezs]], [[4ezt]], [[4ezu]], [[4ezv]], [[4ezw]], [[4ezx]], [[4ezy]], [[4ezz]], [[4f00]], [[4hy9]], [[4hyb]], [[4jwc]], [[4jwd]], [[4jwe]], [[4jwi]], [[4r5i]], [[4f01]], [[7jmm]], [[7jn8]], [[7jn9]], [[7jne]], [[7n6j]], [[7n6k]], [[7n6l]], [[7n6m]] – EcDnaK SBD + peptide<br />
**[[7kzi]], [[7kzu]] – EcDnaK/peptide<br />
**[[7krw]], [[7kzi]], [[7kzu]] – EcDnaK/peptide<br />
**[[1q5l]] - EcDnaK SBD +peptide – NMR<br />
**[[1q5l]] - EcDnaK SBD +peptide – NMR<br />
**[[4r5g]] - EcDnaK CT + inhibitor<br />
**[[4r5g]] - EcDnaK CT + inhibitor<br />
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**[[5f3k]], [[5f5r]] – hHsp75 NTD<br />
**[[5f3k]], [[5f5r]] – hHsp75 NTD<br />
**[[5hph]] – hHsp75 residues 60-554<br />
**[[5hph]], [[7ulk]] – hHsp75 residues 60-554<br />
**[[4z1f]], [[4z1g]], [[4z1h]], [[4z1i]], [[5y3n]], [[5y3o]], [[7c04]], [[7c05]], [[7c7b]], [[7c7c]] – hHsp75 + inhibitor<br />
**[[4z1f]], [[4z1g]], [[4z1h]], [[4z1i]], [[5y3n]], [[5y3o]], [[7c04]], [[7c05]], [[7c7b]], [[7c7c]] – hHsp75 + inhibitor<br />
**[[6xg6]] – hHsp75 residues 60-704 + ADP – Cryo EM<br />
**[[7kck]], [[7klu]], [[7klv]] – hHsp75 residues 60-704 + AMPPNP – Cryo EM<br />
**[[7kcl]], [[7kcm]] – hHsp75 residues 60-704 + SDHB + AMPPNP – Cryo EM<br />


*Hsp83
*Hsp83
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**[[3u67]] – LmHsp83 NTD + ADP – ''Leishmania major''
**[[3u67]] – LmHsp83 NTD + ADP – ''Leishmania major''


* Hsp90 – 4 domains: N-terminus (NTD) residues 1-236; linker;  middle (MD); C-terminus (CT)  
* Hsp90 – 4 domains: N-terminus (NTD) residues 1-236; linker 237-283;  middle (MD) 284-543; C-terminus (CT)  


*''Hsp90-α NTD''
*''Hsp90-α NTD''


**[[3t0h]], [[5j2v]], [[6gpw]] - hHsp90 NTD – human<br />
**[[3t0h]], [[5j2v]], [[6gpw]], [[7s8y]], [[7s8z]][[5xr]],  - hHsp90 NTD – human<br />
**[[5j80]], [[6gr4]], [[6gp4]] - hHsp90 NTD (mutant)<br />
**[[5j80]], [[6gr4]], [[6gp4]] - hHsp90 NTD (mutant)<br />
**[[2h8m]], [[2hch]], [[2gqp]] – dHsp90B1 NTD <br />
**[[2h8m]], [[2hch]], [[2gqp]] – dHsp90B1 NTD <br />
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**[[2k5b]] - hHsp90 NTD+Cdc37 – NMR - docking<br />
**[[2k5b]] - hHsp90 NTD+Cdc37 – NMR - docking<br />
**[[3eko]], [[3ekr]] - hHsp90 NTD+dihydroxyphenyl amide<br />
**[[3eko]], [[3ekr]] - hHsp90 NTD+dihydroxyphenyl amide<br />
**[[3bm9]], [[3bmy]], [[5xre]], [[5xrb]], [[5xr9]], [[5xr5]], [[5xqe]], [[5xqd]] - hHsp90 NTD+ oxazole derivative<br />
**[[3bm9]], [[3bmy]], [[5xrd]], [[5xre]], [[5xrb]], [[5xr9]], [[5xr5]], [[5xqe]], [[5xqd]] - hHsp90 NTD+ oxazole derivative<br />
**[[2of6]], [[3b24]], [[3b27]], [[3b28]], [[3r92]] - hHsp90 NTD+triazine derivative<br />
**[[2of6]], [[3b24]], [[3b27]], [[3b28]], [[3r92]] - hHsp90 NTD+triazine derivative<br />
**[[5j20]], [[5j27]], [[5j2x]], [[5j64]], [[5j6l]], [[5j6m]], [[5j82]], [[5j86]], [[5j8m]], [[5j6n]], [[5j8u]], [[5j9x]] - hHsp90-α NTD - hHsp90-a NTD+triazol derivative<br />
**[[5j20]], [[5j27]], [[5j2x]], [[5j64]], [[5j6l]], [[5j6m]], [[5j82]], [[5j86]], [[5j8m]], [[5j6n]], [[5j8u]], [[5j9x]], [[8agi]], [[8agl]] - hHsp90-α NTD +triazol derivative<br />
**[[2qfo]], [[3nmq]], [[3r4m]], [[3r4n]], [[3r4o]], [[3r4p]], [[3b25]], [[3b26]], [[2jcc]], [[3rlp]], [[3rlq]], [[3rlr]], [[2wi1]], [[2wi2]], [[2wi3]], [[2wi4]], [[2wi5]], [[2wi6]], [[2wi7]], [[2jjc]], [[5fnc]] - hHsp90 NTD+pyrimidine derivative<br />
**[[8agj]] - hHsp90-a NTD (mutant) +triazol derivative<br />
**[[2qfo]], [[3nmq]], [[3r4m]], [[3r4n]], [[3r4o]], [[3r4p]], [[3b25]], [[3b26]], [[2jcc]], [[3rlp]], [[3rlq]], [[3rlr]], [[2wi1]], [[2wi2]], [[2wi3]], [[2wi4]], [[2wi5]], [[2wi6]], [[2wi7]], [[2jjc]], [[5fnc]], [[7dmc]], [[7s98]], [[7s99]], [[7s9f]], [[7s9g]], [[7s9h]], [[7s9i]] - hHsp90 NTD+pyrimidine derivative<br />
**[[7a90]], [[7s95]] - hHsp90 NTD+ adenine <br />
**[[6f1n]] - hHsp90 NTD+pyridine derivative<br />
**[[6f1n]] - hHsp90 NTD+pyridine derivative<br />
**[[1uy6]], [[1uy7]], [[1uy8]], [[1uy9]], [[1uyc]], [[1uyd]], [[1uye]], [[1uyf]], [[1uyg]], [[1uyh]], [[1uyi]], [[1uyk]], [[1uyl]], [[6el5]], [[2fwy]], [[2fwz]], [[2h55]], [[3o0i]], [[6cyh]], [[6cyg]], [[6b9a]], [[6b99]] - hHsp90 NTD+purine derivative<br />
**[[1uy6]], [[1uy7]], [[1uy8]], [[1uy9]], [[1uyc]], [[1uyd]], [[1uye]], [[1uyf]], [[1uyg]], [[1uyh]], [[1uyi]], [[1uyk]], [[1uyl]], [[6el5]], [[2fwy]], [[2fwz]], [[2h55]], [[3o0i]], [[6cyh]], [[6cyg]], [[6b9a]], [[6b99]] - hHsp90 NTD+purine derivative<br />
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**[[6cjr]], [[6cjs]] – CaHsp90 NTD + inhibitor<br />
**[[6cjr]], [[6cjs]] – CaHsp90 NTD + inhibitor<br />
**[[7k9s]], [[7k9u]], [[7k9v]], [[7k9w]] – CnHsp90 NTD + inhibitor<br />
**[[7k9s]], [[7k9u]], [[7k9v]], [[7k9w]] – CnHsp90 NTD + inhibitor<br />
''Hsp90-a NTD+linker residues 1-293''
**[[7ur3]] - hHsp90 + inhibitor <br />


*''Hsp90-α MD''
*''Hsp90-α MD''


**[[6ksq]] - hHsp90 MD <br />
**[[2gq0]] - EcHsp90 MD<br />
**[[2gq0]] - EcHsp90 MD<br />


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*''Hsp90-α MD + CT'' residues 293-732
*''Hsp90-α MD + CT'' residues 293-732


**[[3q6m]], [[3q6n]] - hHsp90 MD + CT<br />
**[[3q6m]], [[3q6n]], [[7rxz]], [[7ry0]], [[7ry1]] - hHsp90 MD + CT<br />
**[[2o1t]] – dHsp90B1 MD+CT<br />
**[[2o1t]] – dHsp90B1 MD+CT<br />


*''Hsp90-α full length''
*''Hsp90-α full length 1-732''


**[[6xg6]] - hHsp90 + ADP – Cryo EM <br />
**[[2qf6]] - hHsp90 + antigen<br />
**[[2qf6]] - hHsp90 + antigen<br />
**[[5fwk]], [[5fwl]], [[5fwm]], [[5fwp]] – hHsp90 + CDC37 + CDK4<br />
**[[5fwk]], [[5fwl]], [[5fwm]], [[5fwp]] – hHsp90 + CDC37 + CDK4<br />
**[[7l7j]] - hHsp90 + P23 + ANP – Cryo EM <br />
**[[7krj]] - hHsp90 + GR + P23 + ATP – Cryo EM <br />
**[[8h77]] - hHsp90 + AhR + P23 + XAP2 + ADP – Cryo EM <br />
**[[7l7i]] - hHsp90 + FKBP51 + P23 + ANP – Cryo EM <br />
**[[7kw7]] - hHsp90 + Hsp70 + GR + STI1 + ADP – Cryo EM <br />
**[[2o1u]] – dHsp90B1+AMPPNP<br />
**[[2o1u]] – dHsp90B1+AMPPNP<br />
**[[2o1v]] - dHsp90B1+ADP<br />
**[[2o1v]] - dHsp90B1+ADP<br />
Line 284: Line 313:
*Hsp90-β
*Hsp90-β


**[[8eob]] - hHsp90 – Cryo EM <br />
**[[6n8w]] - hHsp90 NTD <br />
**[[6n8w]] - hHsp90 NTD <br />
**[[5fwk]], [[5fwl]], [[5fwm]], [[5fwp]] – hHsp90 + CDC37 + CDK4<br />
**[[5fwk]], [[5fwl]], [[5fwm]], [[5fwp]] – hHsp90 + CDC37 + CDK4<br />
**[[1uym]], [[6n8y]] - hHsp90 NTD+ purine inhibitor<br />
**[[1uym]], [[6n8y]], [[7ulj]] - hHsp90 NTD+ purine inhibitor<br />
**[[5uc4]], [[5uch]], [[5uci]], [[5ucj]], [[4o04]], [[4o05]], **[[4o07]] - hHsp90-b NTD + inhibitor<br />
**[[5uc4]], [[5uch]], [[5uci]], [[5ucj]], [[4o04]], [[4o05]], **[[4o07]] - hHsp90-b NTD + inhibitor<br />
**[[3nmq]] - hHsp90 NTD+pyrimidine derivative
**[[3nmq]] - hHsp90 NTD+pyrimidine derivative
**[[3pry]] – hHsp90 MD<br />
**[[3pry]] – hHsp90 MD<br />
**[[7zub]] - hHsp90 + AIP + AH receptor + ADP -  Cryo EM <br />
**[[8e0a]] - hHsp90 + AIPL1 + ANP – Cryo EM <br />
**[[7z37]], [[7z38]] - hHsp90 + Cdc37 + RAF-1 – Cryo EM <br />
**[[8gae]] - hHsp90 + Cdc37 + RAF-1 + PP5 – Cryo EM <br />
**[[7zr0]] - hHsp90 + Cdc37 + BRAF – Cryo EM <br />
**[[7zr5]], [[7zr6]] - hHsp90 + Cdc37 + BRAF + PP5 – Cryo EM <br />
**[[7y04]] - mHsp90 + AH receptor + P23 + ADP -  mouse - Cryo EM <br />


* Hsp82 is the yeast equivalent of Hsp90 in mammals  
* Hsp82 is the yeast equivalent of Hsp90 in mammals  
Line 331: Line 368:
**[[1khy]] – EcClpB NTD <br />
**[[1khy]] – EcClpB NTD <br />
**[[1jbk]] – EcClpB nucleotide binding domain 1<br />
**[[1jbk]] – EcClpB nucleotide binding domain 1<br />
**[[1yg6]] – EcClpP<br />
**[[1yg8]], [[3hln]] – EcClpP (mutant)<br />
**[[2fzs]], [[7mk5]] – EcClpP + inhibitor<br />
**[[6nb1]] – EcClpP + activator<br />
**[[3mt6]] – EcClpP + Adep1<br />
**[[6wr2]], [[6wsg]] – EcClpP + ClpX – Cryo EM<br />
**[[6wrf]] – EcClpP + ClpX + GFP – Cryo EM<br />
**[[8et3]] – EcClpP + ClpX + GFP + SSPB – Cryo EM<br />
**[[4iod]], [[4irf]] - PfClpB <br />
**[[4iod]], [[4irf]] - PfClpB <br />
**[[1qvr]] - TtClpB <br />
**[[1qvr]] - TtClpB <br />
Line 356: Line 401:
**[[7m1l]], [[7m1m]] – ClpP2 – ''Pseudomonas aeruginosa''<br />
**[[7m1l]], [[7m1m]] – ClpP2 – ''Pseudomonas aeruginosa''<br />
**[[6cfd]] – ClpP + antibiotic – ''Enterococcus faecium''<br />
**[[6cfd]] – ClpP + antibiotic – ''Enterococcus faecium''<br />
**[[7tfm]] – ClpP N-domain – ''Leishmania mexicana''<br />


*Hsp101
*Hsp101
Line 374: Line 420:
**[[5zui]] – ChtHsp104 – ''Chaetomium thermophilum''<br />
**[[5zui]] – ChtHsp104 – ''Chaetomium thermophilum''<br />
**[[7cg3]] – ChtHsp104 - Cryo EM<br />
**[[7cg3]] – ChtHsp104 - Cryo EM<br />
**[[5d4w]] – ChtHsp104 (mutant)<br />


* Hsp110 in mammals is named Sse1, Sse2 in yeast  
* Hsp110 in mammals is named Sse1, Sse2 in yeast  
Line 411: Line 458:


**[[5ycq]] – EcHspQ<br />
**[[5ycq]] – EcHspQ<br />
*Hsp DegP or Periplasmic serine endoprotease DegP; Domains PDZ1 38-385; PDZ2 400-474
**[[3mh4]] – EcDegP <br />
**[[1ky9]] – EcDegP (mutant) <br />
**[[8f0a]], [[8f0u]], [[8f1t]], [[8f1u]], [[8f21]] – EcDegP + telomeric repeat-binding factor peptide – Cryo EM<br />
**[[2zle]], [[4a8d]] – EcDegP + OmpC – Cryo EM<br />
**[[3cs0]], [[3mh5]], [[3mh6]], [[3mh7]], [[3ou0]], [[6jjk]], [[6jjl]], [[6jjo]] – EcDegP + peptide <br />
**[[3otp]] – EcDegP + lysozyme <br />


*'''Heat shock cognate protein (Hsc)'''
*'''Heat shock cognate protein (Hsc)'''
Line 438: Line 494:
**[[2v7z]] – rHsc70 NBD + SBD – rat<br />
**[[2v7z]] – rHsc70 NBD + SBD – rat<br />
**[[7hsc]], [[1ckr]] - rHsc70 sub - NMR<br />
**[[7hsc]], [[1ckr]] - rHsc70 sub - NMR<br />
**[[3cqx]] - Hsc70 NBD+BAG domain regulator protein – mouse<br />
**[[3cqx]] - Hsc70 NBD+BAG domain regulator protein <br />


*''Hsc82''
*''Hsc82''
Line 445: Line 501:
**[[6xlh]] - yHsc82 MD+co-chaperone AHA1 + ADP + ATPgS<br />
**[[6xlh]] - yHsc82 MD+co-chaperone AHA1 + ADP + ATPgS<br />
**[[6xld]], [[6xle]], [[6xlf]] - yHsc82 MD+co-chaperone AHA1 + ANP <br />
**[[6xld]], [[6xle]], [[6xlf]] - yHsc82 MD+co-chaperone AHA1 + ANP <br />
**[[6xlb]] - yHsc82 MD+co-chaperone AHA1 + ANP – Cryo EM<br />
**[[6xlg]] - yHsc82 MD+co-chaperone AHA1 + ATPgS<br />
**[[6xlg]] - yHsc82 MD+co-chaperone AHA1 + ATPgS<br />



Revision as of 10:46, 1 May 2023

3D Structures of Heat Shock Proteins3D Structures of Heat Shock Proteins

Updated on 01-May-2023

  • Hsp60 - the large subunit of the chaperonin molecule GroEL
    • 3los – MmHsp60 - GroEL – Methanococcus maripaludis – closed state
    • 3iyf - MmHsp60 - GroEL – open state
    • 3e76 – EcHsp60 – GroEL+Tl ion – Escherichia coli
    • 2nwc, 1oel, 1grl, 1la1, 7v98 - EcHsp60 – GroEL
    • 2eu1, 7v9r - EcHsp60 (mutant) – GroEL
    • 2cgt - EcHsp60 – GroEL+ADP+capsid assembly protein Gp31
    • 2c7c, 2c7d - EcHsp60 – GroEL+GroES – cryo EM
    • 1gr5 - EcHsp60 – GroEL – cryo EM
    • 1gru - EcHsp60 – GroEL+ATP+GroES+ADP – cryo EM
    • 1dkd - EcHsp60 – GroEL apical (top) domain (146 amino acids)+12-mer peptide
    • 1dk7, 1jon - EcHsp60 – GroEL apical domain
    • 1kid - EcHsp60 (mutant) – GroEL apical domain
    • 1srv - TtHsp60 – GroEL apical domain
    • 4v4o - TtHsp60 – GroEL+GroES
    • 1ass, 1asx - Hsp60 – GroEL apical domain – Thermoplasma acidophilum
  • Hsp65
    • 3rtk – MtHsp65 – Mycobacterium tuberculosis
  • Hsp70 – 3 domains: N-terminus ATPase hydrolyzes ATP to ADP (NBD) residues 1-380; hydrophobic amino acid binding domain (SBD) residues 381-564: C-terminus lid domain (CT) residues 534-641.
  • Hsp70 family protein 5 or endoplasmic reticulum chaperone BIP
    • 6cz1, 6dfm, 6dfo, 6do2, 6dws - hBIP ATPase domain + adenosine derivative 26-407
    • 6hab - haBIP (mutant) - hamster
    • 6h9u, 6ha7 - haBIP + mesencephalic atrocyte-derived neurotrophic factor - hamster
  • DnaK or chaperone protein DnaK (Hsp70 from E. coli) Domains: NBD 1-383; SBD 389-607
  • Hsp75 or TRAP-1

Hsp90-a NTD+linker residues 1-293

    • 7ur3 - hHsp90 + inhibitor
  • Hsp90-α MD
  • Hsp90-α CT
  • Hsp90-α NTD + MD
    • 2o1w - dHsp90B1 NTD+MD
  • Hsp90-α MD + CT residues 293-732
  • Hsp90-α full length 1-732
    • 2qf6 - hHsp90 + antigen
    • 5fwk, 5fwl, 5fwm, 5fwp – hHsp90 + CDC37 + CDK4
    • 7l7j - hHsp90 + P23 + ANP – Cryo EM
    • 7krj - hHsp90 + GR + P23 + ATP – Cryo EM
    • 8h77 - hHsp90 + AhR + P23 + XAP2 + ADP – Cryo EM
    • 7l7i - hHsp90 + FKBP51 + P23 + ANP – Cryo EM
    • 7kw7 - hHsp90 + Hsp70 + GR + STI1 + ADP – Cryo EM
    • 2o1u – dHsp90B1+AMPPNP
    • 2o1v - dHsp90B1+ADP
    • 1y4s, 1y4u, 2iop, 2ior - EcHsp90+ADP
    • 2ioq - EcHsp90
  • Hsp90-β
    • 8eob - hHsp90 – Cryo EM
    • 6n8w - hHsp90 NTD
    • 5fwk, 5fwl, 5fwm, 5fwp – hHsp90 + CDC37 + CDK4
    • 1uym, 6n8y, 7ulj - hHsp90 NTD+ purine inhibitor
    • 5uc4, 5uch, 5uci, 5ucj, 4o04, 4o05, **4o07 - hHsp90-b NTD + inhibitor
    • 3nmq - hHsp90 NTD+pyrimidine derivative
    • 3pry – hHsp90 MD
    • 7zub - hHsp90 + AIP + AH receptor + ADP - Cryo EM
    • 8e0a - hHsp90 + AIPL1 + ANP – Cryo EM
    • 7z37, 7z38 - hHsp90 + Cdc37 + RAF-1 – Cryo EM
    • 8gae - hHsp90 + Cdc37 + RAF-1 + PP5 – Cryo EM
    • 7zr0 - hHsp90 + Cdc37 + BRAF – Cryo EM
    • 7zr5, 7zr6 - hHsp90 + Cdc37 + BRAF + PP5 – Cryo EM
    • 7y04 - mHsp90 + AH receptor + P23 + ADP - mouse - Cryo EM
  • Hsp82 is the yeast equivalent of Hsp90 in mammals
  • Hsp100 are named ClpA or ClpB or ClpC or ClpL or ClpP
    • 1r6b, 1ksf – EcClpA (mutant)
    • 1r6c, 1k6k – EcClpA N-terminal
    • 1r6o, 1r6q – EcClpA N-terminal + ClpS
    • 1mg9, 1lzw, 1mbu, 1mbv, 1mbx – EcClpA + YLJA
    • 6w1z, 6w20, 6w21, 6w22, 6w23, 6w24 – EcClpA + RepA + GFP + ADP + ATP – Cryo EM
    • 6uqe, 6uqo – EcClpA + ClpP + RepA + GFP + ADP + ATPgS – Cryo EM
    • 4ciu - EcClpB (mutant)
    • 4d2u, 4d2x, 4d2q - EcClpB – Cryo EM
    • 5og1, 5ofo - EcClpB + ATPgS – Cryo EM
    • 6qs8, 6qs7, 6qs6, 6og3 - EcClpB (mutant) + casein – Cryo EM
    • 6og2 - EcClpB (mutant) + ADP – Cryo EM
    • 6og1 - EcClpB (mutant) + ADP + ATPgS – Cryo EM
    • 6qs4 - EcClpB + casein + ADP + ATPgS – Cryo EM
    • 6rn4 - EcClpB (mutant) + casein + ATPgS – Cryo EM
    • 6oax, 6oay - EcClpB (mutant) + casein + ADP + ATPgS – Cryo EM
    • 1khy – EcClpB NTD
    • 1jbk – EcClpB nucleotide binding domain 1
    • 1yg6 – EcClpP
    • 1yg8, 3hln – EcClpP (mutant)
    • 2fzs, 7mk5 – EcClpP + inhibitor
    • 6nb1 – EcClpP + activator
    • 3mt6 – EcClpP + Adep1
    • 6wr2, 6wsg – EcClpP + ClpX – Cryo EM
    • 6wrf – EcClpP + ClpX + GFP – Cryo EM
    • 8et3 – EcClpP + ClpX + GFP + SSPB – Cryo EM
    • 4iod, 4irf - PfClpB
    • 1qvr - TtClpB
    • 4fct - TtClpB CT
    • 4lj4 - TtClpB nucleotide binding domain 2
    • 4hse - TtClpB nucleotide binding domain 1 + ADP
    • 4lj5 - TtClpB nucleotide binding domain 2 + ADP
    • 4lj6 - TtClpB nucleotide binding domain 2 + AMPPCP
    • 4lj9, 4lja - TtClpB nucleotide binding domain 2 (mutant) + AMPPCP
    • 4lj8 - TtClpB nucleotide binding domain 2 (mutant) + ADP
    • 4lj7 - TtClpB nucleotide binding domain 2 (mutant) + ADP derivative
    • 4fcv, 4fcw, 4fd2 - TtClpB CT (mutant)
    • 3zri - VcClpB NTD – Vibrio cholerae
    • 3zrj - VcClpB NTD + peptide
    • 6ed3 - MtClpB – Cryo EM
    • 6w6e - MtClpB + ADP + ATPgS – Cryo EM
    • 6dju, 6djv - MtClpB + casein + ATPgS – Cryo EM
    • 6em8, 6em9 - SaClpC – Cryo EM
    • 6emw - SaClpC + MecA – Cryo EM
    • 6pba, 6pbq - MtClpC NTD
    • 6pbs - MtClpC NTD + ecumicin
    • 6cn8 - MtClpC NTD + rufomycin
    • 6lsy - SpClpL – Cryo EM
    • 6lt4 - SpClpL + ATPgS – Cryo EM
    • 7m1l, 7m1m – ClpP2 – Pseudomonas aeruginosa
    • 6cfd – ClpP + antibiotic – Enterococcus faecium
    • 7tfm – ClpP N-domain – Leishmania mexicana
  • Hsp101
  • Hsp104
    • 5kne, 6n8z, 6n8v, 6n8t – yHsp104 - Cryo EM
    • 6ahf – yHsp104 (mutant) – Cryo EM
    • 5u2u, 6amn, 5wbw – yHsp104 NTD
    • 5vy8 – yHsp104 + ADP
    • 5vy9, 5vya – yHsp104 + casein
    • 5vjh – yHsp104 + casein + ATP-γ-S
    • 5u2l – CaHsp104 NTD – Candida albicans
    • 6d00 – CtHsp104 – Calcarisporiella thermophila - Cryo EM
    • 6azy – CtHsp104 (mutant)
    • 5zui – ChtHsp104 – Chaetomium thermophilum
    • 7cg3 – ChtHsp104 - Cryo EM
    • 5d4w – ChtHsp104 (mutant)
  • Hsp110 in mammals is named Sse1, Sse2 in yeast
    • 6gfa – hHsp110 + ATP
    • 3d2e, 3d2f, 3c7n – ySse1+Hsc70
    • 2qxl – ySse1
    • 2llv – ySti1 domain 1 – NMR
    • 2llw – ySti1 domain 2 – NMR
    • 3upv – ySti1 TPR repeats 7-9 + ySse1 peptide
    • 3uq3 - ySti1 TPR repeats 4-9 + peptide
    • 5z8q, 5z8i – ySsa1 SBD - NMR
  • HspA5 or Grp78 or Endoplasmic reticulum chaperone BIP or 78 kDa glucose-related protein; Domains – NBD 26-407; SBD 418-637
  • HspQ
  • Hsp DegP or Periplasmic serine endoprotease DegP; Domains PDZ1 38-385; PDZ2 400-474
  • Heat shock cognate protein (Hsc)
  • Hsc20
  • Hsc70
  • Hsc82
    • 6xlc - yHsc82 + ANP
    • 6xlh - yHsc82 MD+co-chaperone AHA1 + ADP + ATPgS
    • 6xld, 6xle, 6xlf - yHsc82 MD+co-chaperone AHA1 + ANP
    • 6xlb - yHsc82 MD+co-chaperone AHA1 + ANP – Cryo EM
    • 6xlg - yHsc82 MD+co-chaperone AHA1 + ATPgS
  • Hsc90

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Jaime Prilusky, Joel L. Sussman