Ribonuclease 3D structures

3D Structures of Ribonuclease3D Structures of Ribonuclease

Updated on 18-October-2023

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• RNase I or RNase A or RNase pancreatic
  • 4kxh - hRNase I pancreatic- human
    
  • 2k11 - hRNase I pancreatic - NMR
    
  • 1dza - hRNase I pancreatic (mutant)
    
  • 1afu, 1bel, 1c0b, 1c0c, 1jvv, 1jvt, [1js0]], 1fs3, 1kf2, 1kf3, 1kf4, 1kf5, 1kf7, 1kf8, 1aqp, 1a2w, 1rnw, 1rnz, 1rno, 1rnq, 1rbx, 1ssc, 1srn, 1lsq, 1rat, 1rbn, 1rha, 1rhb, 1rnx, 1rny, 1rsm, 1xps, 1xpt, 2e3w, 2g4w, 2g4x, 2gbq, 2blp, 2blz, 2jvt, 2g8q, 2rat, 3mwq, 3mx8, 3i67, 3i6f, 3i6h, 3i6j, 3i7w, 3eux, 3euy, 3euz, 3ev0, 3ev1, 3ev2, 3ev3, 3ev4, 3ev5, 3ev6, 3dh5, 3mwr, 3mzq, 3mzr, 3rat, 3srn, 3rn3, 4rat, 4ao1, 4j5z, 4j60, 4j61, 4j62, 4j63, 4j64, 4j65, 4j66, 4j67, 4j68, 4j69, 4j6a, 4mxf, 4ooh, 4ot4, 4qh3, 4rte, 4s0q, 4s18, 4srn, 5d6u, 5jmg, 5jml, 5na9, 5obc, 5obd, 5obe, 5rat, 5rsa, 6etr, 6etq, 6etp, 6eto, 6etn, 6etm, 6etl, 6etk, 6rat, 6xvx, [6xw0]], 6yo1, 7p4r, 7p8r, 7pni, 7q75, 7q76, 7q77, 7q78, 7q79, [[[7q7a]], [7q7b]], 7rat, 7rsa, 8rat, 8rsa, 9rat, 9rsa - bRNase I pancreatic - bovine
    
  • 3a1r, 4zz4, 5d97, 5rsa, 6rsa - bRNase I pancreatic - neutron
    
  • 2aas - bRNase I pancreatic - NMR
    
  • 1a5p, 1a5q, 1c9v, 1c8w, 1c9x, 1eic, 1eid, 1eie, 1dy5, 1izp, 1izq, 1izr, 1kh8, 1ssa, 1ssb, 1ymn, 1ymr, 1ymw, 2apq, 2nui, 2op2, 3i7x, 3i7y, 3fkz, 3fl3, 3dh6, 3di7, 3di8, 3di9, 3dib, 3dic, 2oqf, 3bcm, 3bco, 3bcp, 3rsd, 3rsk, 3rsp, 4rsd, 3ql1, 3ql2, 3rh1, 3rid, 4o36, 4o37, 4k7m, 4k7l, 4okf - bRNase I pancreatic (mutant)
    
  • 1rar, 1ras - bRNase I pancreatic fluoroscent
    
  • 6qmn - RNase I pancreatic - bison
    
  • 1rra - rRNase I pancreatic - rat
    
  • 3f8g, 2e0j, 2e0l, 2e0m, 2e0o, 1h8x, 1e21,
  • 3ljd, 3ln8, 2vq8, 2vq9 - ZeRNase I - Zebrafish
    
  • 2pqx, 2pqy - EcRNase I - Escherichia coli
    
• RNase I complex
  • 1z7x - hRNase I pancreatic + inhibitor
    
  • 3lxo, 3jw1, 3djo, 3djp, 3djq, 3djv, 3djx, 3dxg, 3dxh, 2w5g, 2w5i, 2w5k, 2w5l, 2w5m, 3d6o, 3d6p, 3d6q, 3d7b, 3d8y, 3d8z, 2pca, 2g8r, 1z6d, 1z6s, 1u1b, 1w4o, 1w4p, 1w4q, 1wbu, 1o0f, 1jn4, 1jvu, 1f0v, 1ruv, 1rnm, 1rnn, 1rbw, 1rca, 1rpf, 1rpg, 1rph, 1rnc, 1rnd, 1rob, 1rta, 1rtb, 1afk, 1afl, 1eos, 1eow, 1o0h, 1o0m, 1o0n, 1o0o, 1qhc, 1rcn, 2qca, 5ogh - bRNase I pancreatic + nucleotide
    
  • 6rsa - bRNase I pancreatic + nucleotide - neutron
    
  • 3fl0, 3fl1, 4rsk, 5et4, 4wyp, 4wyz - bRNase I pancreatic (mutant) + nucleotide
    
  • 2xog, 2xoi, 2q4g, 1dfj, 4g8v, 4g8y, 4g90, 5e5e, 5e5f, 5jlg, 6gok, 6f60, 5old, 5nj7, 6pvx, 6pvw, 6pvv, 6pvu - bRNase I pancreatic + inhibitor
    
  • 4peq - bRNase I pancreatic + inhibitor protein
    
  • 2p42, 2p43, 2p44, 2p45, 2p46, 2p47, 2p48, 2p49, 2p4a, 1bzq, 3qsk, 4pou - bRNase I + antibody
    
  • 2e33 - bRNase I + F-box only protein 2
    
  • 4l55 - bRNase I + aziru
    
  • 6qe9 - bRNase I + Pt
    
  • 7qhr, 7qpw, 7qpy, 7qpz, 7qq0, 7z6d, 7z6g, 8oqc, 8oqd, 8oqe, 8oqf, 8oqg - bRNase I + Rh derivative
    
  • 7r1p - bRNase I + Au derivative
    
  • 7qwh - bRNase I + V derivative
    
  • 6pvu, 6pvv, 6pvw, 6pvx - bRNase I + polyphosphate
    
  • 3tsr - mRNase I + inhibitor - mouse
    
  • 4per - RNase I pancreatic + inhibitor protein - chicken
    
  • 2z70, 2ea1 - EcRNase I + DNA
    
• RNase II
  • 2bex - hRNase II + RNase inhibitor protein
    
  • 2bzz, 2c01, 2c02, 2c05 - hRNase II + inhibitor
    
  • 1m58, 1km8, 1km9 - BuRNase II - Bullfrog
    
  • 1bc4 - BuRNase II - NMR
    
  • 1m07 - BuRNase II + DNA
    
  • 2ix0, 2id0 - EcRNase II
    
  • 2ix1 - EcRNase II (mutant)
    
• RNase III
  • 1dyt, 1qmt, 2khx - hRNase III
    
  • 2kb5 - hRNase III - NMR
    
  • 1h1h - hRNase III + nucleotide
    
  • 6v5b, 6v5c - hRNase III + DGCR8 + microRNA – Cryo EM
    
  • 7ty1 - RNase III - Macaque
    
  • 1z5f - BuRNase III
    
  • 1t4n, 1t4o - yRNase III - yeast - NMR
    
  • 2luq - yRNase III RNA-binding domain
    
  • 2lup, 4oog, 5t16 - yRNase III RNA-binding domain + RNA
    
  • 2lbs, 1t4l - yRNase III RNA-binding domain + RNA - NMR
    
  • 2nue, 2nuf, 2nug, 1yyk, 1yyw, 4m2z, 4m30 - AaRNase III + RNA - Aquifex aeolicus
    
  • 2ez6, 1yyo, 1yz9, 1rc7 - AaRNase III (mutant) + RNA
    
  • 1rc5, 1i4s, 1jfz - AaRNase III N terminal
    
  • 2a11 - MtRNase III - Mycobacterium tuberculosis
    
  • 1o0w - TmRNase III - Thermotoga maritima
    
  • 3n3w, 3o2r - RNase III nuclease domain - Campylobacter jejuni
    
  • 7r97 - EcRNase III (mutant) + RNA
    
• RNase III Dicer or endoRNase dicer or double-strand-specific RNase mdcr-1
  • 4ngg, 4ngf, 4nha – hDicer platform-PAZ-connector helix cassette residues 765-1065 + RNA
    
  • 4ngb, 4ngc, 4ngd, 4ngf, 4ngg, 4nh3, 4nh5, 4nh6, 4nha – hDicer platform-PAZ-connector helix cassette (mutant) + RNA
    
  • 2eb1 – hDicer C terminal
    
  • 4wyq – hDicer residues 267-389 + polypeptide +TARBP2
    
  • 5zak - hDicer+ RISC-loading complex subunit TARBP2
    
  • 5zal, 5zam - hDicer + RISC-loading complex subunit TARBP2 + RNA
    
  • 3c4b, 3c4t – mDicer RNase III+dsRNA binding domains
    
  • 7yz4 – mDicer – Cryo EM
    
  • 7yym, 7yyn, 7zpi – mDicer RNase III+ RNA – Cryo EM
    
  • 7zpj – mDicer + RNA + TARBP2 – Cryo EM
    
  • 6bua – DmDicer2 – Drosophila melanogaster
    
  • 6bu9 – DmDicer2 + RNA
    
  • 2l6m - Dicer residues 1259-1358 - fission yeast - NMR
    
  • 2ff1 - Dicer - Giardia intestinalis
    
  • 7dey - Dicer - Pichia stipitis
    
• RNase 4
  • 1wdy - hRNase 4
    
  • 2rnf, 1rnf, 5ark - hRNase 4 + nucleotide
    
  • 5ar6 - pRNase 4 - pig
    
  • 5arj - pRNase 4 (mutant)
    
  • 5arl - pRNase 4 (mutant) + nucleotide
    
  • 1kvz - BuRNase 4 - NMR
    
• RNase 5 or angiogenin (Ang)
  • 1ang, 1b1i, 1h52, 4aoh, 5eop, 5epz, 5eqo - hRNase 5
    
  • 1awz – hAng - NMR
    
  • 7npm, 8oo3, 8oo4 – hAng + Pt derivative
    
  • 1b1e, 1b1j, 1gv7, 1h53, 1hby, 1k58, [1k59]], 1k5a, 1k5b, 1un3, 1un4, 1un5, 2ang, 4ahd, 4ahe, 4ahf, 4ahg, 4ahh, 4ahi, 4ahj, 4ahk, 4ahl, 4ahm, 4ahn, 4b36, 5m9v, 5m9t, 5m9s, 5m9r, 5m9q, 5m9p, 5m9m, 5m9j, 5m9g, 5m9c, 5m9a, 7pnj, 7pnp, 7pnr - hRNase 5 (mutant)
    
  • 1h0d - hRNase 5 + antibody
    
  • 1a4y - hRNase 5 + RNae inhibitor
    
  • 8af0 - hRNase 5 + RNA
    
  • 1agi – bAng
    
  • 1gio – bAng - NMR
    
  • 4qfi, 4qfj – rAng
    
  • 2bwk, 2bwl – mAng
    
  • 3zbv – mAng-2
    
  • 3zbw – mAng-3
    
  • 2j4t – mAng-4
    
  • 3lje - ZeRNase 5
    
  • 7bfk, 7bfl – saAng-1 (mutant) - salmon
    
• RNase 6
  • 4x09, 6mv7, 6mv6, 5oab, 6enp - hRNase 6
    
  • 1oj1, 1oj8 - BuRNase 6 + nucleotide
    
• RNase 7
  • 2hky - hRNase 7 - NMR
    
• RNase B
  • 1rbb - bRNase B
    
  • 1rbj - bRNase B + tetranucleotide
    
• RNase BA or barnase
  • 1yvs, 1b2x, 1a2p, 1bni, 1bnj - BaRNase BA - Bacillus amyloliquefaciens
    
  • 1b20, 1b21, 1b2z, 1bne, 1bnf, 1bng, 1brh, 1bri, 1brj, 1brk, 1bns, 1brg, 1bsa, 1bsb, 1bsc, 1bsd, 1bse, 1bna, 1bao - BaRNase BA (mutant)
    
  • 2kf3, 2kf4, 1fw7, 1bnr - BaRNase BA - NMR
    
  • 3kch, 2f4y, 2f56, 2f5m, 2f5w - BaRNase BA crosslinked
    
  • 3da7, 1brs, 1bgs - BaRNase BA + barstar
    
  • 1x1u, 1x1x, 1x1y, 1b27, 1b2u, 1b3s, 1x1w - BaRNase BA + barstar (mutant)
    
  • 1b2s, 2za4. 6pqk, 7mrx - BaRNase BA (mutant) + barstar (mutant)
    
  • 1brn, 2kf5, 2kf6, 1rnb - BaRNase BA + nucleotide
    
  • 1brn, 2kf5, 2kf6, 1rnb - BaRNase BA + nucleotide
    
• RAase D
  • 1yt3 - EcRNase D
    
• RNase E; Domains: recognition 1-28; S1 35-125; catalytic 1-515
  • 8b0j - EcRNase E + RapZ + RNA – Cryo EM
    
  • 2vmk, 2c4r, 2bx2 - EcRNase E catalytic domain
    
  • 1slj - EcRNase E S1 domain - NMR
    
  • 1smx, 1sn8 - EcRNase E S1 domain
    
  • 2vrt, 2c0b - EcRNase E catalytic domain + RNA
    
  • 5f6c, 6g63 - EcRNase E catalytic domain (mutant) + RNA
    
  • 3h8a - EcRNase E recognition domain + enolase
    
  • 5ohg - EcRNase E residues 813-850 + enolase
    
  • 4oxp - CcRNase E S1+ sensor domains – Caulobacter crescentus
    
  • 6x2d - VcRNase E DNAse I domain – Vibrio cholerae
    
• RNase F1
  • 1fus, 1fut - GfRNase F1 + nucleotide - Gibberella fujikuroi
    
  • 1rck, 1rci - GfRNase F1 - NMR
    
• RNase H
  • 3h7i, 3h8s, 3h8w - T4RNase H (mutant) - Enterobacteria phage T4
    
  • 2ihn - T4RNase H (mutant) + DNA
    
  • 3h8j, 1tfr - T4RNase H
    
  • 4e89 - RNase H - XMRV
    
  • 4ly7 - RNase H - ancestral
    
  • 2rpi, 1ril - TtRNase H - Thermus thermophilus
    
  • 1rbr, 1rbs, 1rbt, 1rbu, 1rbv, 2rn2 - EcRNase H
    
  • 1lav, 1law, 1rda, 1rdb, 1rdc - EcRNase H (mutant)
    
  • 1jl2 - EcRNase H/TtRNase H
    
  • 4z0u - EcRNase H + peptide
    
  • 3d0p, 3ey1, 3i8d, 4opj, 4opk, 5swm - BhRNase H (mutant) + DNA - Bacillus halodurans
    
  • 8cty, 8ctz, 8cu0, 8sv3, 8sv4 - RNase H (mutant) + DNA - Halalkalibacterium halodurans
    
  • 1zbf - BhRNase H (mutant)
    
  • 6dpp, 6dpo, 6dpn, 6dpm, 6dpl, 6dpk, 6dpj, 6dpi, 6dpg, 6dph, 6dpf, 6dpe, 6dpd, 6dpc, 6dpb, 6dpa, 6dp9, 6dp8 6dp7, 6dp6, 6dp5, 6dp4, 6dp3, 6dp2, 6dp1, 6dp0, 6doz, 6doy, 6dox, 6dow, 6dov, 6dou, 6dot, 6dos, 6dor, 6doq, 6dop, 6doo, 6don, 6dom, 6dol, 6dok, 6doj, 6doi, 6doh, 6dog, 6dof, 6doe, 6dod, 6doc, 6dob, 6doa, 6do9, 6do8, 6dmv, 6dmn - BhRNase H + RNA + DNA
    
  • 2r7y, 2g8f, 2g8h, 2g8i, 2g8k, 2g8u, 2g8v, 2g8w, 1zbi, 1zbl, 3twh, 3uld, 5us2, 5usa, 5use, 5usg, 5w7n, 5w7o, 5wjr - BhRNase H (mutant) + RNA + DNA
    
  • 4htu, 4hue, 4huf, 4hug - BhRNase H + DNA
    
  • 4ibn - uRNase H - uncultured
    
  • 4h8k - uRNase H + RNA + DNA
    
  • 4e7h, 4e7i, 4e7j, 4e7k, 4e7l - RNase H + DNA – human spumaretrovirus
    
• RNase HI
  • 3bsu - hRNase HI catalytic domain + RNA + DNA
    
  • 2qk9, 2qkb, 2qkk - hRNase HI (mutant) + RNA + DNA
    
  • 1qhk - yRNase HI N terminal - NMR
    
  • 3h08 - RNase HI - Chlorobaculum tepidum
    
  • 1g15, 1rdd, 1rnh, 7vsa, 7vsb, 7vsc, 7vsd, 7vse - EcRNase HI
    
  • 3aa2, 3aa3, 3aa4, 3aa5, 2yv0, 2z1g, 2z1h, 2z1i, 2z1j, 1wse, 1wsf, 1wsg, 1wsh, 1wsi, 1wsj, 1jxb, 1jl1, 1f21, 1kva, 1kvb, 1kvc, 1goa, 1gob, 1goc - EcRNase HI (mutant)
    
  • 1rch - EcRNase HI - NMR
    
  • 2zqb - SoRNase HI (mutant) - Shewanella oneidensis
    
  • 2e4l - SoRNase HI
    
  • 2ehg - RNase HI - Sulfolobus tokodaii
    
  • 3u3g - uRNase HI
    
  • 4e19, 4nyn - RNase HI - Halobacterium salinarium
    
• RNase HII
  • 3puf, 3p56, 3p5j - hRNase HII subunits α+β+γ
    
  • 7n2p - hRNase HII subunit β + HLA + macroglobulin + Tcr
    
  • 3kio - mRNase HII subunits α+β+γ
    
  • 3p83 - AfRNase HII + DNA polymerase sliding clamp - Archaeoglobus fulgidus
    
  • 1i39, 1i3a - AfRNase HII
    
  • 3o3g - TmRNase HII + DNA
    
  • 3o3f, 3o3h, 4hht - TmRNase HII (mutant) + DNA
    
  • 2etj - TmRNase HII
    
  • 1x1p, 1io2 - TkRNase HII - Thermococcus kodakarensis
    
  • 2dfe, 2dff, 2dfh - TkRNase HII (mutant)
    
  • 1eke - MjRNase HII - Methanocaldococcus jannaschii
    
  • 5y9p - SaRNase HII - Staphylococcus aureus
    
  • 7uwe - EcRNase HII in excision repair complex – Cryo EM
    
• RNase HIII
  • 2d0a, 2d0b, 2d0c - GsRNase HIII - Geobacillus stearothermophilus
    
  • 3asm - GsRNase HIII (mutant)
    
  • 1uax - PhRNase HIII - Pyrococcus horikoshii
    
  • 3vn5 - AaRNase HIII
    
  • 4py5 - RNase HIII + RNA + DNA – Thermovibrio ammonificans
    
• RNase J
  • 3bk1 - TtRNase J
    
  • 3bk2 - TtRNase J + nucleotide
    
  • 7pcr - RNase J – Helicobacter pylori
    
  • 7wnt - MtRNase J
    
  • 7wnu - MtRNase J + RNA
    
  • 3zq4 - BsRNase J1 - Bacillus subtilis
    
  • 6k6s - SeRNase J1 - Staphylococcus epidermidis
    
  • 6k6w - SeRNase J2
    
  • 5haa - MpRNase - Methanolobus psychrophilus
    
  • 5hab, 5ws2 - MpRNase (mutant) + RNA
    
  • 4xwt - DrRNase J + nucleotide - Deinococcus radiodurans
    
  • 4xww - DrRNase J + RNA
    
  • 5a0t, 5a0v - RNase J + RNA - Streptomyces coelicolor
    
  • 5vaj - BhRNase J + RNA + DNA
    
• RNase K
  • 5oab - hRNase K6
    
  • 6xbw - bRNase K in v-ATPase – Cryo EM
    
  • 6vq6, 6vq7, 6vq8, 6vqc, 6vqg, 6vqh - rRNase K in v-ATPase – Cryo EM
    
• RNase L or 2-5A-dependent RNase
  • 4g8k - hRNase L
    
  • 1wdy, 4g8l - hRNase L + 2-5A
    
  • 4oau - hRNase L + ADP + RNA
    
  • 4o1o - pRNase L + oligoadenylate + CMP - pig
    
  • 4o1p - pRNase L + oligoadenylate + AMPPNP
    
  • 4oav - pRNase L + oligoadenylate + AMPPCP + RNA
    
  • 7dsy, 7dts, 7elw - pRNase L + inhibitor
    
  • 6m11, 6m12, 6m13 - pRNase L + drug
    
• RNase LE
  • 1dix - RNase LE - Solanum lycopersicum
    
• RNase MAR1
  • 1xn4 - RNase MAR1 - Leishmania major
    
  • 2b34 - RNase MAR1 - Caenorhabditis elegans
    
• RNase MC1
  • 1v9h, 1j1f, 1j1g - McRNase MC1 (mutant) + nucleotide - Momordica charantia
    
  • 1ucg - McRNase MC1 (mutant)
    
  • 1uca, 1ucc, 1ucd - McRNase MC1 + nucleotide
    
  • 1bk7 - McRNase MC1
    
• RNase MRP
  • 6w6v, 7c79, 7c7a - yRNase MRP – Cryo EM
    
  • 7c7a - yRNase MRP + RNA – Cryo EM
    
• RNase MS
  • 1rms, 1rds - RNase MS - Aspergillus phoenicis
    
• RNase M5
  • 6tg6 - GsRNase M5 toprim domain
    
  • 6tgj, 6z2b - GsRNase M5 RBD
    
  • 6tpq - BsRNase M5 in 50S ribosome – Cryo EM
    
• RNase NT
  • 1vcz, 1vd1, 1vd3 - NgRNase NT + nucleotide - Nicotiana glutinosa
    
  • 1iyb - NgRNase NW
    
• RNase P
  • 4xgl, 4xgm - hRNase P
    
  • 6ahr - hRNase P – cryo EM
    
  • 6ahu - hRNase P + tRNA – cryo EM
    
  • 7onu - hRNase P catalytic subunit + tRNA-Tyr + CoA dehydrogenase – cryo EM
    
  • 5nfj - hRNase P protein 1 + SAM
    
  • 6cwx - hRNase P subunits P20+P25
    
  • 6ahv - hRNase P subunit P40
    
  • 6agb - yRNase P – cryo EM
    
  • 6ah3 - yRNase P + tRNA + RNA – cryo EM
    
  • 3iab - yRNase P subunits POP6+POP7 + RNase MRP P3 domain
    
  • 1nz0 - TmRNase P
    
  • 6max - TmRNase P + purpurin
    
  • 6cqc - TmRNase P + inhibitor
    
  • 3q1q, 3q1r - TmRNase P + TmRNase P RNA + tRNAPhe
    
  • 1d6t, 6d1r - SaRNase P
    
  • 6ov1 - SaRNase P (mutant)
    
  • 2a64 - GsRNase P (mutant)
    
  • 1a6f, 1nbs, 2jg4 - BsRNase P (mutant)
    
  • 1ts9, 1tsf - AfRNase P
    
  • 1u9s - RNase P - synthetic
    
  • 2avs - PfRNase P (mutant) - Pyrococcus furiosus
    
  • 2k3r. 2ki7 - PfRNase P
    
  • 2ljp - EcRNase P
    
  • 7uo0, 7uo1, 7uo2, 7uo5 - EcRNase P + RNA – Cryo EM
    
  • 2av5 - PhRNase P component 2
    
  • 1x0t - PhRNase P component 4
    
  • 2zae - PhRNase P components 1+4
    
  • 2czv - PhRNase P component 2 (mutant) +3
    
  • 6k0a - MjRNase P components 1-4 + L7AE + RPR – Cryo EM
    
  • 6k0b - MjRNase P components 1-4 + L7AE + tRNA + RPR – Cryo EM
    
  • 5diz, 5ft9 - RNase P2 - Arabidopsis thaliana
    
  • 7og5 - RNase P – Cryo EM – Halorhodospira halophila
    
  • 7f3e - AaRNase P – cryo EM
    
  • 7e8j, 7e8k - RNase P - Thermococcus celer
    
  • 7e8o - RNase P + tRNA-His - Planctomyceetes bacterium
    
• RNase PH
  • 3dd6 - RNase PH - Bacillus anthracis
    
  • 1oyp, 1oyr, 1oys - BsRNase PH
    
  • 1r6l, 1r6m - PaRNase PH - Pseudomonas aeruginosa
    
  • 3b4t - MtRNase PH
    
  • 1udn - AaRNase PH
    
  • 1udo, 1udq, 1uds - AaRNase PH (mutant)
    
• RNase PO1
  • 3who - omRNase PO1 – oyster mushroom
    
  • 3wr2 - omRNase PO1 + nucleotide
    
• RNase pop2
  • 4b8a - yRNase pop2 + cell division cycle protein 39
    
  • 4b8c - yRNase pop2 + cell division cycle protein 39 + CCR4
    
• RNase R
  • 5xgu - EcRNase R (mutant)
    
  • 7dcy - MgRNase R – Mycoplasma genitalium
    
  • 7dic, 7did, 7dol - MgRNase R (mutant) + RNA
    
• RNase RH
  • 1bol - RNase RH - Rhizopus niveus
    
• RNase RRP
  • 7tuv - RNase RRP - Trypanosoma brucei
    
• RNase S
  • 1r5d, 1r3m, 1n1x, 1n3z, 1j7z, 1j80, 1j81, 1j82, 1cjq, 1cjr, 1bsr, 1rbc, 1rbd, 1rbe, 1rbf, 1rbg, 1rbh, 1rbi, 1rnu, 1rnv, 2rns - bRNase S
    
  • 3oqy, 3oqz, 3or0, 1z3l, 1z3m, 1z3p, 1y92, 1y94, 1fev, 1d5d, 1d5e, 1d5h, 2rln, 1qwq, 4n4c - bRNase S seminal (mutant)
    
  • 1tq9, 1r5c, 11ba, 11bg - bRNase S + nucleotide
    
  • 1b6v - bRNase S/bRNase A
    
  • 4ygw - bRNase S + peptide
    
• RNase S3
  • 1iqq - RNase S3 - Japanese pear
    
• RNase SA or guanyl-specific RNase SA
  • 3a5e, 1zgx, 1ynv, 1t2h, 1t2i, 1uci, 1ucj, 1uck, 1ucl, 1i70, 1i8v, 1box, 4gho, 4j5g, 4j5k - SaRNase SA guanyl-specific (mutant) - Streptomyces aureofaciens
    
  • 1lni, 1c54, 1rge, 1rgf, 1rgg, 1rgh, 1sar - SaRNase SA
    
  • 1gmp, 1gmq, 1gmr, 2sar - SaRNase SA + nucleotide
    
  • 1ay7 - SaRNase SA + barstar
    
  • 1rsn - SaRNase SA + cyclophosphothiolate
    
  • 1py3, 1pyl - SaRNase SA2
    
  • 3dgy, 3dh2, 3d4a, 3d5g, 3d5i - SaRNase SA2 + nucleotide
    
  • 1mgr, 1mgw - SaRNase SA3
    
• RNase SF11
  • 1ioo - RNase SF11 - Nicotiana alata
    
• RNase T or exonuclease T or 3’-5’ exonuclease
  • 2is3, 7t2s - EcRNase T
    
  • 3ngy - EcRNase T (mutant)
    
  • 3ngz - EcRNase T (mutant) + nucleotide
    
  • 3ngo, 3nh1, 3nh2 - EcRNase T + nucleotide
    
  • 3v9s, 3v9w, 3v9u, 3v9x, 3v9z, 3va0, 3va3, 4kaz, 4kb0, 4kb1, 3nh0 - EcRNase T + DNA
    
  • 2f96 - PaRNase T
    
• RNase T1
  • 5gy6 - muRNase T1 - mushroom
    
  • 6ls1, 7w05 - muRNase T1 + nucleotide
    
  • 1tto, 1rn1, 1rn4, 1rnt, 2aad, 2aae - AoRNase T1 - Aspergillus oryzae
    
  • 1q9e, 1iyy, 1i2e, 1i2f, 1i2g, 1i3f, 1i3i, 1hz1, 1fys, 1fzu, 1ch0, 4bir, 3bir, 5bir, 1g02, 1hyf, 1trp, 1trq, 2bir, 4rnt, 5rnt, 6rnt, 7rnt, 8rnt, 9rnt - AoRNase T1 (mutant)
    
  • 1ygw - AoRNase T1 - NMR
    
  • 1bvi, 2bu4, 2hoh, 3hoh, 4hoh, 5hoh, 1gsp, 2gsp. 3gsp, 4gsp, 5gsp. 6gsp, 7gsp, 1det, 1rls, 1lra, 1rga, 1bu4, 1rgc, 3bu4, 4bu4, 5bu4, 3syu, 3urp, 2rnt, 6gsp, 7gsp - AoRNase T1 + nucleotide
    
  • 1lov, 1low, 1loy, 1i0v, 1i0x, 1b2m, 1rhl, 1bir, 1rgk, 1rgl, 5hoh - AoRNase T1 (mutant) + nucleotide
    
  • 3rnt - AoRNase T1 + V
    
• RNase T2
  • 3t0o - hRNase T2
    
• RNase U2
  • 3agn, 3ago, 3ahw - UsRNase U2 + AMP - Ustilago sphaerogena
    
  • 1rtu - UsRNase U2
    
  • 3ahs - UsRNase U2B
    
• RNase VAP
  • 6a7v - MtRNase C11 + B11
    
  • 5x3t - MtRNase C26 + B26
    
  • 6wzf, 5wz4 - MtRNase C20
    
  • 5sv2 - MtRNase C21
    
  • 7vwo - MtRNase C43 + B43
    
  • 5l6m, 5k8j - CcRNase C + B
    
  • 5l6l - CcRNase C + B + DNA
    
  • 5h4h, 5h4g - PhRNase C4
    
• RNase Z
  • 3v32, 3v33, 3v34 - hRNase Z
    
  • 5mtz - yRNase Z
    
  • 2e7y - TmRNase Z
    
  • 2fk6, 4gcw - BsRNase Z (mutant) + tRNA Thr
    
  • 1y44 - BsRNase Z (mutant)
    
  • 2cbn - EcRNase Z
    
• RNase ZC3H12A or regnase
  • 3v32, 3v34 - hRNase ZC N-terminal domain 112-296
    
  • 3v33 - hRNase ZC N-terminal+zinc finger domains 112-334
    
  • 2n5j - mRNase ZC N-terminal domain - NMR
    
  • 2n5l - mRNase ZC C-terminal domain 544-596 - NMR
    
  • 2n5k - mRNase ZC zinc finger domain 299-327 - NMR
    
  • 5h9v, 5h9w - mRNase ZC PIN domain
    
• RNase α-sarcin
  • 1de3 - AgRNase αs - Aspergillus giganteus
    
  • 1r4y - AgRNase αs (mutant)
    
• Oligoribonuclease
  • 6rci - hORNase
    
  • 2igi, 1yta - EcORNase
    
  • 2gbz - ORNase - Xanthomonas campestris
    
  • 1j9a - HiORNase - Haemophilus influenza
    
  • 3tr8 - CbORNase - Coxiella burnetii
    
  • 5cy4 - AbORNase - Acinetobacter baumannii
    
  • 7v5h - VcORNase
    
  • 6a4a - CpORNase – Colwella psychreythraea
    
  • 6rk6 - ORNase - metagenome
    
  • 7v9z - PaORNase
    
  • 7wik - MsORNase - Mycobcterium smegmatis
    
  • 7vh4 - EcORNase
    
• Oligoribonuclease complex
  • 6j7y, 6j7z, 6j80, 6rcn - hORNase + DNA
    
  • 6rcl, 6sty - hORNase + RNA
    
  • 6nkl - HiORNase + VAPB1
    
  • 6n6a, 6n6c, 6n6d, 6n6e, 6n6f, 6n6g, 6n6h, 6n6i, 6n6j, 6n6k - VcORNase + RNA
    
  • 6a4e - CpORNase (mutant) + RNA
    
  • 6a4d - CpORNase (mutant) + PNP-TMP
    
  • 6a4f - CpORNase + UMP
    
  • 7va3, 7va6 - PaORNase (mutant) + RNA
    
  • 7va2 - PaORNase (mutant) + GMP
    
• NanoRNase or bifunctional oligoribonuclease and PAP phosphatase nRNA
  • 5j21 - BsNNase - Bacillus subtilis
    
  • 5ipp, 5iuf - BsNNase (mutant) + nucleotide
    
  • 5izo - BsNNase (mutant)
    
  • 5cet - MtNNase
    
  • 7mpr, 7mps, 7mpt - BmNNase C – Brucella melitensis
    
  • 7mpu - BmNNase C + GG
    
  • 7mpl, 7mpm, 7mpn, 7mpo, 7mpp, 7mpq, 7mqb, 7mqc, 7mqd, 7mqe 7mqf, 7mqg, 7mqh, 7mqi - NNase C + RNA – Bartonella henselae
    
• Polynucleotide phosphorylase or Polyribonucleotide nucleotidyltransferase
  • 3u1k, 5zf6 - hPNPase
    
  • 3cdi, 7ogl - EcPNPase
    
  • 3gll - EcPNPase core
    
  • 3cdj - EcPNPase C terminal truncated
    
  • 1sro, 6qh2 - EcPNPase RNA-binding domain - NMR
    
  • 3gcm, 3gme, 3h1c - EcPNPase + RNase E recognition domain
    
  • 7ogk - EcPNPase + RNA - CryoEM
    
  • 7ogm - EcPNPase + Hfq + RNA - CryoEM
    
  • 1e3h, 1e3p - PNPase - Streptomyces antibioticus
    
  • 3h36 - PNPase fragment - Streptomyces mutans
    
  • 4nbq - CbPNPase
    
  • 4am3 - CvPNPase + RNA - Caulobacter vibrioides
    
  • 4aid, 4aim - CvPNPase + RNAse E peptide
    
  • 7ld5 - MsPNPase + RNA
    
  • 6d6k - AbPNPase
    
  • 5yjj - SePNPase
    
  • 5xex – SaPNPase catalytic domain
    
• Binase
  • 1gou, 1gov, 1goy - BiBinase - Bacillus intermedius
    
  • 2rbi, 4haa - BiBinase (mutant)
    
  • 1buj - BiBinase - NMR
    
• Poly(A)-specific RNase
  • 2a1s - hParn
    
  • 2a1r, 3ctr - hParn + nucleotide
    
  • 1ug8 - mParn R3H domain - NMR
    
  • 1whv - mParn RNA-binding domain - NMR
    
  • 2rok - mParn CAP-binding domain - NMR
    
  • 3d45 - mParn + nucleotide
    
  • 4bwp - DmParn regulatory subunit
    
  • 4q8g, 4q8h - yParn catalytic subunit
    
  • 4xr7 - yParn regulatory+catalytic subunits
    
  • 4bwk - NcParn regulatory subunit – Neurospora crassa
    
  • 4bwx - NcParn regulatory subunit (mutant)
    
  • 4czv, 4czw - NcParn catalytic subunit
    
  • 4czx, 4czy - NcParn regulatory+catalytic subunits
    
• RNase pop2
  • 4b8a - yRNase pop2 + cell division cycle protein 39
    
  • 4b8c - yRNase pop2 + cell division cycle protein 39 + CCR4
    
• Mini-RNase
  • 6tnn - BsMRNase in 50S ribosome – Cryo EM
    
  • 4oun - BsMRNase 3
    
• Other RNases
  • 6ttc, 6tcd – saRnase
    
  • 2zpo - RNase - Chelonia mydas
    
  • 3iek - TtRNase - Thermus thermophilus
    
  • 3a4y, 3idz, 3ie0, 3ie2, 3ie1, 3iem - TtRNase (mutant)
    
  • 3iel - TtRNase + nucleotide
    
  • 6of4, 6of3, 6of2 - RNase + Clp1_P domain-containing protein - Chaetomium thermophilum