Ribosome 3D structures: Difference between revisions

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**[[6vu3]] – Ec30S + mRNA - Cryo EM<br />
**[[6vu3]] – Ec30S + mRNA - Cryo EM<br />
**[[3t1h]], [[3t1y]] - Tt30S ribosomal subunit+16S rRNA+tRNA Lys +mRNA<br />  
**[[3t1h]] - Tt30S ribosomal subunit+16S rRNA+tRNA Lys +mRNA<br />  
**[[6dti]], [[6mkn]] - Tt30S ribosomal subunit+16S rRNA+tRNA Arg +mRNA<br />
**[[6dti]], [[6mkn]] - Tt30S ribosomal subunit+16S rRNA+tRNA Arg +mRNA<br />
**[[4v8j]] - Tt30S ribosomal subunit+16S rRNA+tRNA Phe+tRNA fMet+mRNA<br />
**[[4v8j]] - Tt30S ribosomal subunit+16S rRNA+tRNA Phe+tRNA fMet+mRNA<br />
Line 56: Line 56:


**[[1i95]], [[1i97]], [[2hhh]], [[2f4v]], [[4dr3]], [[6cap]], [[6car]] -  Tt30S ribosomal subunit+16S rRNA+antibiotic<br />
**[[1i95]], [[1i97]], [[2hhh]], [[2f4v]], [[4dr3]], [[6cap]], [[6car]] -  Tt30S ribosomal subunit+16S rRNA+antibiotic<br />
**[[1hnx]], [[1hnw]], [[1hnz]], [[1fjg]], [[4aqy]], [[4dr5]], [[4dr6]], [[4dr7]], [[4khp]], [[7dug]], [[7duh]] [[7dui]], [[7duj]], [[7duk]], [[7dul]] - Tt30S ribosomal subunit+16S rRNA+mRNA fragment+antibiotic <br />
**[[1hnx]], [[1hnw]], [[1hnz]], [[1fjg]], [[3t1y]], [[4aqy]], [[4dr5]], [[4dr6]], [[4dr7]], [[4khp]], [[7dug]], [[7duh]] [[7dui]], [[7duj]], [[7duk]], [[7dul]] - Tt30S ribosomal subunit+16S rRNA+mRNA fragment+antibiotic <br />
**[[4v7l]] - Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S rRNA+ antibiotic<br />
**[[4v7l]] - Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S rRNA+ antibiotic<br />
**[[6mpf]], [[6mpi]] - Tt30S ribosomal subunit +A-site tRNA-Arg +mRNA +16S rRNA+ antibiotic<br />
**[[6mpf]], [[6mpi]] - Tt30S ribosomal subunit +A-site tRNA-Arg +mRNA +16S rRNA+ antibiotic<br />
Line 101: Line 101:
**[[6g5h]] - h40S ribosomal subunit + RACK1 - Cryo-EM<br />
**[[6g5h]] - h40S ribosomal subunit + RACK1 - Cryo-EM<br />
**[[6zlw]], [[6zmt]], [[6zn5]], [[6zoj]], [[6zok]], [[6zol]], [[7k5i]] - h40S + SARS Nsp1 - Cryo-EM<br />
**[[6zlw]], [[6zmt]], [[6zn5]], [[6zoj]], [[6zok]], [[6zol]], [[7k5i]] - h40S + SARS Nsp1 - Cryo-EM<br />
**[[7tql]] - h40S ribosomal subunit + RACK1+ elF1A + eIF5B - Cryo EM<br />
**[[5vyc]] - h40S ribosomal subunit + DENR-MCT-1 - Cryo-EM<br />
**[[5vyc]] - h40S ribosomal subunit + DENR-MCT-1 - Cryo-EM<br />
**[[4kzx]] - r40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM<br />
**[[4kzx]] - r40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM<br />
**[[4kzy]] - r40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM<br />
**[[4kzy]] - r40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM<br />
**[[4kzz]] - r40S ribosomal subunit+ RACK1 + EIF1A + initiator tRNA – Cryo-EM<br />  
**[[4kzz]] - r40S ribosomal subunit+ RACK1 + EIF1A + initiator tRNA – Cryo-EM<br />  
**[[6p4g]], [[6p4h]], [[6w2s]], [[6w2t]] - r40S ribosomal subunit + virus IRES – Cryo-EM<br />
**[[6p4g]], [[6p4h]], [[6w2s]], [[6w2t]], [[7syg]], [[7syh]], [[7syi]], [[7syj]], [[7syk]], [[7syl]], [[7sym]], [[7syn]], [[7syo]], [[7syp]], [[7syq]] - r40S ribosomal subunit + virus IRES – Cryo-EM<br />
**[[7jqb]] - r40S + SARS Nsp1 - Cryo-EM<br />
**[[7jqb]] - r40S + SARS Nsp1 - Cryo-EM<br />
**[[7jqc]] - r40S + SARS Nsp1 + virus IRES - Cryo-EM<br />
**[[7jqc]] - r40S + SARS Nsp1 + virus IRES - Cryo-EM<br />
**[[4bts]] - r40S ribosomal subunit+ 18SrRNA + EIF1 + EIF1A <br />
**[[4bts]] - r40S ribosomal subunit+ 18SrRNA + eIF1 + eIF1A <br />
**[[8auv]] – RACK1 in 40S ribosome – tobacco - Cryo EM <br />
**[[6fai]], [[6y7c]] - y40S ribosomal subunit + PNO1 + 20S rRNA + TSR1 + LTV1 + RIO2 - Cryo-EM<br />
**[[6fai]], [[6y7c]] - y40S ribosomal subunit + PNO1 + 20S rRNA + TSR1 + LTV1 + RIO2 - Cryo-EM<br />
**[[6wdr]] - y40S ribosomal subunit + RACK1 + 20S rRNA + TSR1 - Cryo-EM<br />
**[[6wdr]] - y40S ribosomal subunit + RACK1 + 20S rRNA + TSR1 - Cryo-EM<br />
Line 115: Line 117:
**[[6zvi]] - y40S + Mbf1 – Cryo-EM<br />
**[[6zvi]] - y40S + Mbf1 – Cryo-EM<br />
**[[6nd4]] - y40S ribosomal subunit + SOF1 + IMP3 + MPP10 + BUD21 + NOP56 + NOP58 + NOP1 + SNU13 + RRP9 + FAF1 – Cryo-EM<br />
**[[6nd4]] - y40S ribosomal subunit + SOF1 + IMP3 + MPP10 + BUD21 + NOP56 + NOP58 + NOP1 + SNU13 + RRP9 + FAF1 – Cryo-EM<br />
**[[8cbj]] – y40S pre-initiation complex + Otu2 – Cryo EM <br />
**[[4v5o]] - Tet40S ribosomal subunit+RACK1 – ''Tetrahymena thermophila''<br />
**[[4v5o]] - Tet40S ribosomal subunit+RACK1 – ''Tetrahymena thermophila''<br />
**[[5xyi]] - Tv40S ribosomal subunit+ RACK1 – ''Trichomonas vaginalis'' - Cryo-EM<br />
**[[5xyi]] - Tv40S ribosomal subunit+ RACK1 – ''Trichomonas vaginalis'' - Cryo-EM<br />
Line 125: Line 128:
**[[6zon]], [[6zp4]] – h43S + SARS Nsp1 - Cryo_EM<br />
**[[6zon]], [[6zp4]] – h43S + SARS Nsp1 - Cryo_EM<br />
**[[6zce]], [[7a1g]] – y43S + ABCE-1 - Cryo_EM<br />
**[[6zce]], [[7a1g]] – y43S + ABCE-1 - Cryo_EM<br />
**[[8cah]] – y43S pre-initiation complex + Otu2 – Cryo EM <br />
**[[7ase]] – Tc43S + helicase - Cryo_EM<br />
**[[7ase]] – Tc43S + helicase - Cryo_EM<br />


*48S preinitiation
*48S preinitiation


**[[6fec]], [[6ybs]], [[6ybw]], [[6zmw]] – h48S - Cryo_EM<br />
**[[6fec]], [[6ybs]], [[6ybw]], [[6zmw]], [[7qp6]], [[7qp7]] – h48S - Cryo_EM<br />
**[[6ybd]] – h48S + eIF3 - Cryo_EM<br />
**[[6ybd]] – h48S + eIF3 - Cryo_EM<br />
**[[6yal]], [[6yan]] – r48S + IF-3 + mRNA - Cryo_EM<br />
**[[6yal]], [[6yan]], [[7syv]] – r48S + IF-3 + mRNA - Cryo_EM<br />
**[[6yam]] – r48S + mRNA - Cryo_EM<br />
**[[6yam]] – r48S + mRNA - Cryo_EM<br />
**[[7syt]], [[7syu]] - r48S translation initiation complex + IRES - Cryo EM<br />
**[[7syr]], [[7sys]] - r48S translation initiation complex + IRES + eIF2 - Cryo EM<br />
**[[7syw]], [[7syx]] - rRACK1 in 48S translation initiation complex + IRES + eIF5B - Cryo EM<br />
**[[6gsm]], [[6gsn]] – y48S - Cryo_EM<br />
**[[6gsm]], [[6gsn]] – y48S - Cryo_EM<br />
**[[6fyx]], [[6fyy]] – y48S + IF-5 - Cryo_EM<br />
**[[6fyx]], [[6fyy]] – y48S + IF-5 - Cryo_EM<br />
**[[6zu9]] – y48S + ABCE-1 - Cryo_EM<br />
**[[6zu9]] – y48S + ABCE-1 - Cryo_EM<br />
**[[8cas]] – y48S pre-initiation complex + Otu2 – Cryo EM <br />


*50S subunit
*50S subunit
Line 157: Line 165:
*50S subunit + antibiotics
*50S subunit + antibiotics


**[[7a0r]], [[7a18]] - Dr50S + antibiotic<br />
**[[1z58]], [[4io9]], [[4ioa]], [[4ioc]],[[7a0r]], [[7a18]] - Dr50S + antibiotic<br />
**[[3dll]], [[2zjp]], [[3cf5]], [[1xbp]], [[1sm1]], [[1nwx]], [[1nwy]], [[3pio]], [[3pip]] - Dr50S subunit +general stress protein Ctc+ antibiotic<br />  
**[[3dll]], [[2zjp]], [[3cf5]], [[1xbp]], [[1sm1]], [[1nwx]], [[1nwy]], [[3pio]], [[3pip]] - Dr50S subunit +general stress protein Ctc+ antibiotic<br />  
**[[4io9]], [[4ioa]], [[4ioc]] - Dr50S subunit + antibiotics<br />
**[[6u48]] - Ec50S subunit + antibiotics<br />
**[[6u48]] - Ec50S subunit + antibiotics<br />
**[[6pc5]], [[6wyv]], [[6xz7]], [[6xza]], [[6xzb]] - Ec50S + antibiotics – Cryo EM<br />
**[[6pc5]], [[6wyv]], [[6xz7]], [[6xza]], [[6xzb]] - Ec50S + antibiotics – Cryo EM<br />
Line 264: Line 271:
**[[7jt1]], [[7jt3]] – EcRibosome + mRNA + ArfB-1 + ArfB-2 – Cryo-EM<br />
**[[7jt1]], [[7jt3]] – EcRibosome + mRNA + ArfB-1 + ArfB-2 – Cryo-EM<br />
**[[4v6f]], [[4v6g]] , [[4v87]], [[4v8b]] , [[4v8d]], [[4v8e]], [[4v9i]] – TtRibosome + mRNA<br />
**[[4v6f]], [[4v6g]] , [[4v87]], [[4v8b]] , [[4v8d]], [[4v8e]], [[4v9i]] – TtRibosome + mRNA<br />
**[[4wu1]] – TtRibosome + mRNA + P-tRNA<br />
**[[4v4t]] – TtRibosome + stop codon<br />
**[[4v4t]] – TtRibosome + stop codon<br />
**[[4v4p]] – TtRibosome + mRNA operator<br />
**[[4v4p]] – TtRibosome + mRNA operator<br />
Line 284: Line 292:
**[[6ha1]] – BsRibosome + antibiotic – Cryo EM<br />
**[[6ha1]] – BsRibosome + antibiotic – Cryo EM<br />
**[[6s0x]], [[7p48]] – SaRibosome + antibiotic – Cryo EM<br />
**[[6s0x]], [[7p48]] – SaRibosome + antibiotic – Cryo EM<br />
**[[7m4w]], [[7m4z]], [[7ryh]] – AbRibosome + antibiotic - Cryo EM<br />
**[[7m4w]], [[7m4z]], [[7ryh]], [[7uw1]] – AbRibosome + antibiotic - Cryo EM<br />
**[[7m4x]], [[7m4y]], [[7ryf]], [[7ryg]] – AbRibosome + antibiotic + tRNA - Cryo EM<br />
**[[7m4x]], [[7m4y]], [[7ryf]], [[7ryg]] – AbRibosome + antibiotic + tRNA - Cryo EM<br />


Line 311: Line 319:
**[[7pjs]], [[7pjt]] – EcRibosome + tRNA – Cryo EM<br />
**[[7pjs]], [[7pjt]] – EcRibosome + tRNA – Cryo EM<br />
**[[7o1a]], [[7o19]], [[7oiz]], [[7p3k]] – EcRibosome + Tnac leader peptide – Cryo EM<br />
**[[7o1a]], [[7o19]], [[7oiz]], [[7p3k]] – EcRibosome + Tnac leader peptide – Cryo EM<br />
**[[4v6v]] - EcRibosome+ tetracycline resistance protein + mRNA + P-tRNA – Cryo-EM<br />
**[[3j9y]], [[4v6v]] - EcRibosome+ tetracycline resistance protein + mRNA + P-tRNA – Cryo-EM<br />
**[[6vwl]], [[6vwm]], [[6vwn]] – EcRibosome + HIV FSS – Cryo-EM<br />
**[[6vwl]], [[6vwm]], [[6vwn]] – EcRibosome + HIV FSS – Cryo-EM<br />
**[[7d6z]] – EcRibosome + peptide deformylase + trigger factor – Cryo-EM<br />
**[[7d6z]] – EcRibosome + peptide deformylase + trigger factor – Cryo-EM<br />
Line 381: Line 389:
*80S ribosome  
*80S ribosome  


**[[5t2c]], [[6ip5]], [[6qzp]], [[6w6l]], [[6y0g]], [[6y2l]], [[6y57]], [[7bhp]] – hRibosome - Cryo-EM<br />
**[[5t2c]], [[6ip5]], [[6qzp]], [[6w6l]], [[6y0g]], [[6y2l]], [[6y57]], [[7bhp]], [[7xnx]], [[7xny]], [[8g5y]], [[8g5z]], [[[8g60]], [8g6j]] – hRibosome - Cryo-EM<br />
**[[4v5z]] -  dRibosome – dog - Cryo-EM <br />
**[[4v5z]] -  dRibosome – dog - Cryo-EM <br />
**[[6hcm]], [[6hcq]], [[6sgc]], [[6hcf]], [[6gz3]], [[6gz4]], [[6gz5]], [[7mdz]], [[7o7y]], [[7o7z]], [[7o81]] – rRibosome - Cryo-EM<br />
**[[6hcm]], [[6hcq]], [[6sgc]], [[6hcf]], [[6gz3]], [[6gz4]], [[6gz5]], [[7mdz]], [[7o7y]], [[7o7z]], [[7o81]], [[8btk]], [[8p2k]] – rRibosome - Cryo-EM<br />
**[[6hcf]], [[6q8y]], [[7zjw]] - r80S ribosome + mRNA - Cryo EM<br />
**[[7o80]] - r80S ribosome + eRF1 + ABCE1 - Cryo EM<br />
**[[8bhf]] - r80S ribosome + CNOT4 + CCR4-NOT - Cryo EM<br />
**[[7oyd]] - r80S ribosome + Dap1b - Cryo EM<br />
**[[7cpu]], [[7cpv]] -  mRibosome - Cryo-EM <br />
**[[7cpu]], [[7cpv]] -  mRibosome - Cryo-EM <br />
**[[6xu6]], [[6xu7]], [[6xu8]] – DmRibosome - Cryo-EM<br />
**[[6xu6]], [[6xu7]], [[6xu8]] – DmRibosome - Cryo-EM<br />
**[[4v7e]] – Ribosome – wheat - Cryo-EM<br />
**[[4v7e]] – Ribosome – wheat - Cryo-EM<br />
**[[4v7r]], [[4v88]] – yRibosome  <br />
**[[4v7r]], [[4v88]] – yRibosome  <br />
**[[4v6i]], [[6t7t]], [[6t7i]], [[6t83]], [[6t4q]], [[6i7o]], [[6i7v]], [[6xiq]] – yRibosome - Cryo-EM<br />
**[[4v6i]], [[6t7i]], [[6t7t]], [[6t83]], [[6t4q]], [[6i7o]], [[6i7v]], [[6xiq]], [[7n8b]], [[7zux]], [[8ccs]], [[8cdl]], [[8cg8]], [[8cgn]] – yRibosome - Cryo-EM<br />
**[[8cku]] – yRibosome + eEF2 - Cryo-EM<br />
**[[6zj3]] – Ribosome – Euglena gracilis - Cryo-EM<br />
**[[6zj3]] – Ribosome – Euglena gracilis - Cryo-EM<br />
**[[5t2a]] – LdRibosome – Leishmania donovani - Cryo-EM<br />
**[[5t2a]] – LdRibosome – Leishmania donovani - Cryo-EM<br />
Line 409: Line 422:
**[[6ole]], [[6olf]], [[6om0]], [[6om7]] – hRibosome + A-site tRNA + P-site tRNA + drug - Cryo-EM<br />
**[[6ole]], [[6olf]], [[6om0]], [[6om7]] – hRibosome + A-site tRNA + P-site tRNA + drug - Cryo-EM<br />
**[[7nfx]] – hRibosome + SRP + SRP receptor - Cryo-EM<br />
**[[7nfx]] – hRibosome + SRP + SRP receptor - Cryo-EM<br />
**[[8g61]] - hRribosome + mRNA - Cryo EM<br />
**[[6fti]], [[6ftj]] -  dRibosome + oligosaccharyltransferase + Sec61 - Cryo-EM <br />
**[[6fti]], [[6ftj]] -  dRibosome + oligosaccharyltransferase + Sec61 - Cryo-EM <br />
**[[6ftg]] -  dRibosome + OST - Cryo-EM <br />
**[[6ftg]] -  dRibosome + OST - Cryo-EM <br />
Line 445: Line 459:
**[[7b7d]] – yRibosome + A-tRNA + P-tRNA + EF3 – Cryo EM<br />
**[[7b7d]] – yRibosome + A-tRNA + P-tRNA + EF3 – Cryo EM<br />
**[[7nrc]], [[7nrd]] – yRibosome + Gcn1 + A-tRNA + P-tRNA + eIF5A + Rbg2 + Gir2 – Cryo EM<br />
**[[7nrc]], [[7nrd]] – yRibosome + Gcn1 + A-tRNA + P-tRNA + eIF5A + Rbg2 + Gir2 – Cryo EM<br />
**[[8evp]], [[8evs]], [[8evt]], [[8ewc]] – y80S ribosome + IRES – Cryo EM <br />
**[[8bqd]], [[8bqx]] – y80S ribosome + Map1 – Cryo EM <br />
**[[7mpi]], [[7mpj]] – y80S ribosome + Stm1 – Cryo EM <br />
**[[7zw0]] – y80S ribosome + FAP – Cryo EM <br />
**[[7zpq]], [[7zrs]], [[7zuw]] – y80S ribosome + RQT – Cryo EM <br />
**[[8cdr]], [[8ceh]], [[8cf5]], [[8civ]], [[8cku]], [[8cmj]] – y80S ribosome + eEF2 – Cryo EM <br />
**[[8eub]], [[8evq]], [[8evr]], [[8ewb]] – y80S ribosome + IRES + eEF2 + GDP – Cryo EM <br />
**[[6zu5]] – Ribosome + Lso2 – Paranosema locustae - Cryo-EM<br />
**[[6zu5]] – Ribosome + Lso2 – Paranosema locustae - Cryo-EM<br />
**[[4v7h]] - TlRibosome+P-site tRNA – Thermomyces lanuginosus<br />
**[[4v7h]] - TlRibosome+P-site tRNA – Thermomyces lanuginosus<br />

Revision as of 11:15, 22 October 2023

Updated on 22-October-2023 For a general description of the protein see Ribosome

    • 1ibl, 1ibm - Tt30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S rRNA
  • 30S subunit+A-site tRNA+P-site tRNA+E-site tRNA
    • 1jgo, 1jgp, 1jgq - Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S rRNA
  • 30S subunit + antibiotics
  • 30S subunit + ribosome recycling factor
    • 4v9d - Ec30S ribosomal subunit+16S rRNA+ribosome recycling factor + mRNA + tRNA
  • 30S subunit + elongation factor
    • 4v90 - Tt30S ribosomal subunit+THX+RNA +16S rRNA+elongation factor G
    • 6enu - Ec30S ribosomal subunit+THX+RNA +16S rRNA+elongation factor P – Cryo EM
  • 30S subunit + translation initiation factor
    • 1hr0 - Tt30S ribosomal subunit+THX+IF+16S rRNA
    • 1i96 - Tt30S ribosomal subunit+THX+IF3+16S rRNA
    • 6o7k - Ec30S ribosomal subunit+THX+IF1 + IF2 +16S rRNA - tRNA + mRNA – Cryo EM
  • 30S subunit + various proteins
    • 1x18 – TtRPS2+TtRPS7+TtRPS11+TtRPS18+GTP-binding protein ERA+RNA fragments
    • 6ny6 - Tt30S ribosomal subunit + toxin YoeB
    • 2ykr - EcRPS2 + 16S rRNA + GMPPNP + GTPase RSGA
    • 4a2i - EcRPS2 + 16S rRNA + GTPase RSGA – Cryo EM
    • 4adv - EcRPS2 + 16S rRNA + methyltransferase – Cryo EM
    • 5uz4, 5no3, 5no2 - Ec30S ribosomal subunit+ BS6 + US7 + GTPase RsgA +16S rRNA – Cryo EM
    • 6awb, 6awc, 6awd - Ec30S ribosomal subunit + RNA polymerase - Cryo EM
    • 7o5h - Ec30S + KsgA - Cryo EM
    • 6dzk - Ms30S ribosomal subunit + HPF +16S rRNA - Cryo EM
    • 6tmf - 30S ribosomal subunit + RNA-binding protein + L7AE + L41E + ATPase +16S rRNA – Thermococcus celer - Cryo EM
  • 40S ribosomal subunit
  • 40S ribosomal subunit complex
    • 6nf8, 6neq - h40S ribosomal subunit + translation initiation factor 3 - Cryo-EM
    • 5oa3 - h40S ribosomal subunit + translation initiation factor 2D - Cryo-EM
    • 6g4w - h40S ribosomal subunit + PNO1 + bystin + TSR1 + tRNA methyltransferase - Cryo-EM
    • 6g5h - h40S ribosomal subunit + RACK1 - Cryo-EM
    • 6zlw, 6zmt, 6zn5, 6zoj, 6zok, 6zol, 7k5i - h40S + SARS Nsp1 - Cryo-EM
    • 7tql - h40S ribosomal subunit + RACK1+ elF1A + eIF5B - Cryo EM
    • 5vyc - h40S ribosomal subunit + DENR-MCT-1 - Cryo-EM
    • 4kzx - r40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM
    • 4kzy - r40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM
    • 4kzz - r40S ribosomal subunit+ RACK1 + EIF1A + initiator tRNA – Cryo-EM
    • 6p4g, 6p4h, 6w2s, 6w2t, 7syg, 7syh, 7syi, 7syj, 7syk, 7syl, 7sym, 7syn, 7syo, 7syp, 7syq - r40S ribosomal subunit + virus IRES – Cryo-EM
    • 7jqb - r40S + SARS Nsp1 - Cryo-EM
    • 7jqc - r40S + SARS Nsp1 + virus IRES - Cryo-EM
    • 4bts - r40S ribosomal subunit+ 18SrRNA + eIF1 + eIF1A
    • 8auv – RACK1 in 40S ribosome – tobacco - Cryo EM
    • 6fai, 6y7c - y40S ribosomal subunit + PNO1 + 20S rRNA + TSR1 + LTV1 + RIO2 - Cryo-EM
    • 6wdr - y40S ribosomal subunit + RACK1 + 20S rRNA + TSR1 - Cryo-EM
    • 6eml - y40S ribosomal subunit + PNO1 + 20S rRNA + TSR1 + LTV1 + RIO2 + essential nuclear protein 1 – Cryo-EM
    • 6rbe, 6rbd - y40S ribosomal subunit + TSR1 – Cryo-EM
    • 6zvi - y40S + Mbf1 – Cryo-EM
    • 6nd4 - y40S ribosomal subunit + SOF1 + IMP3 + MPP10 + BUD21 + NOP56 + NOP58 + NOP1 + SNU13 + RRP9 + FAF1 – Cryo-EM
    • 8cbj – y40S pre-initiation complex + Otu2 – Cryo EM
    • 4v5o - Tet40S ribosomal subunit+RACK1 – Tetrahymena thermophila
    • 5xyi - Tv40S ribosomal subunit+ RACK1 – Trichomonas vaginalis - Cryo-EM
    • 5opt – Tc40S ribosomal subunit + KSRP – Trypanosoma cruzi - Cryo-EM
    • 6okk – Pf40S ribosomal subunit + antibiotics – Plasmodium falciparum - Cryo-EM
  • 43S preinitiation
    • 6zvj, 7a09 – h43S + ABCE-1 - Cryo_EM
    • 6zon, 6zp4 – h43S + SARS Nsp1 - Cryo_EM
    • 6zce, 7a1g – y43S + ABCE-1 - Cryo_EM
    • 8cah – y43S pre-initiation complex + Otu2 – Cryo EM
    • 7ase – Tc43S + helicase - Cryo_EM
  • 48S preinitiation
    • 6fec, 6ybs, 6ybw, 6zmw, 7qp6, 7qp7 – h48S - Cryo_EM
    • 6ybd – h48S + eIF3 - Cryo_EM
    • 6yal, 6yan, 7syv – r48S + IF-3 + mRNA - Cryo_EM
    • 6yam – r48S + mRNA - Cryo_EM
    • 7syt, 7syu - r48S translation initiation complex + IRES - Cryo EM
    • 7syr, 7sys - r48S translation initiation complex + IRES + eIF2 - Cryo EM
    • 7syw, 7syx - rRACK1 in 48S translation initiation complex + IRES + eIF5B - Cryo EM
    • 6gsm, 6gsn – y48S - Cryo_EM
    • 6fyx, 6fyy – y48S + IF-5 - Cryo_EM
    • 6zu9 – y48S + ABCE-1 - Cryo_EM
    • 8cas – y48S pre-initiation complex + Otu2 – Cryo EM
  • 50S subunit
  • 50S subunit + antibiotics
  • 50S subunit + ribosome releasing factor (RRF)
    • 2rdo - Ec50S subunit +EF-G+RRF – Cryo-EM
    • 3j0d - Tt50S subunit+RRF – Cryo-EM
  • 50S subunit + various proteins
    • 2j28 - Ec50S subunit +signal recognition particle – Cryo-EM
    • 6i0y - Ec50S subunit + tRNA – Cryo-EM
    • 6s0k - Ec50S subunit + tRNA + SecA + RodZ – Cryo-EM
    • 5o2r - Ec50S subunit + antimicrobial peptide – Cryo-EM
    • 5ot7 - Ec50S subunit + EF-G – Cryo-EM
    • 6ys3 - Ec50S + peptide – Cryo-EM
    • 7bl2, 7bl3 - Ec50S + ObgE – Cryo-EM
    • 7bl6 - Ec50S+ ObgE + GMPPNP – Cryo-EM
    • 7bl4 - Ec50S + ObgE + GMPPNP + RsfS – Cryo-EM
    • 1w2b - Hm50S subunit +trigger factor N-terminal
    • 1qvf- Hm50S subunit + deacylated tRNA minihelix
    • 1q86 - Hm50S subunit +CCA-Phe-caproic acid-biotin
    • 3cma, 3cme, 1vq8, 1vq9, 1m90 - Hm50S subunit +CCA+CCA-Phe-CAP-BIO
    • 1vq4, 1vq5, 1vq7, 1vql, 1vqm, 1vqp – Hm50S subunit +transition state analog
    • 1vq6, 1vqk, 1vqn – Hm50S subunit + c-hpmn+CCA-Phe-caproic acid-biotin
    • 1vqo – Hm50S subunt + CCPMN
    • 6ppk - Bs50S subunit + ribosome biogenesis GTPase A – Cryo EM
    • 6ha8 - Bs50S subunit + VmlR – Cryo EM
    • 6htq - Bs50S subunit + RelA – Cryo EM
    • 6szs - Bs50S subunit + BrfA – Cryo EM
    • 7aqc, 7aqd, 7as8, 7as9, 7ope - Bs50S + tRNA + Rqc – Cryo EM
    • 7kgb - Mt50S + SEQ-9 – Cryo EM
  • 60S subunit
  • 60S subunit + various proteins
    • 4v6x – h60S subunit + P0 + P1 + P2 - Cryo EM
    • 4v6i – y60S subunit + P0 + P1 + P2 - Cryo EM
    • 4v8t – y60S subunit + P0 + P1 + P2 + ARX1 - Cryo EM
    • 4v7r – y60S subunit + 5S rRNA + 5.8S rRNA + 25S rRNA + P0
    • 6em5, 6em4, 6em3, 6elz, 6em1 – y60S ribosomal subunit + BRX1 + 5.8S rRNA + 25S RNA + CIC1 + ERB1 + HAS1 + MRT4 + NIP7 + ribosome biogenesis proteins + EIF-6 + nucleolar proteins – Cryo-EM
    • 6cb1, 6c0f, 5z3g – y60S ribosomal subunit + 5.8S rRNA + 25S RNA + CIC1 + HAS1 + MRT4 + NIP7 + ribosome biogenesis proteins + RNA-processing protein + nucleolar proteins + pescadillo homolog – Cryo-EM
    • 6r87, 6r84 – y60S subunit + Vms1 – Cryo EM
    • 5t6r, 5t62 – y60S subunit + Nmd3 – Cryo EM
    • 6ft6 – y60S ribosomal subunit + NOP53 – Cryo-EM
    • 6ylg, 6ylh, 6ylx, 6yly, 7bl5, 7bt6, 7btb – ypre-60S – Cryo-EM
    • 5anc, 5anb, 5an9 – sm60S subunit + P0 + SbdS + EF-Tu – slime mold - Cryo EM
    • 6qkl – sm60S subunit + P0 + SbdS + EIF-6 - Cryo EM
    • 4v6w – Dm60S subunit + P0 – Drosophila melanogaster - Cryo EM
    • 4v8p - Tet60S subunit+ 26S rRNA+ translation initiation factor 6
  • 70S ribosome
  • 70S ribosome complex with mRNA
  • 70S ribosome complex with antibiotic
  • 70S ribosome complex with release factor
    • 6eri – sRibosome + RRF + hibernation promoting factor - Cryo-EM
    • 4v5a – TtRibosome + RRF
    • 4v63, 4v7p, 6bok – TtRibosome + RF-1
    • 4v5e, 4v4r, 4v67, 4v9n – TtRibosome + RF-2
    • 4v5j – TtRibosome + RF-2 + substrate analog
    • 4v8o – TtRibosome + RF-3
    • 4v54 – EcRibosome + RRF
    • 6dnc, 6osk, 6osq – EcRibosome + RF-1 – Cryo-EM
    • 6ouo, 6og7, 6ogf, 6ogg, 6ogi, 6ot3, 6ost, 7oj0 – EcRibosome + RF-2 – Cryo-EM
    • 7o1c – EcRibosome + RF-2 + Tnac peptide – Cryo-EM
    • 5u4i, 5u9f, 5u9g – EcRibosome + RF-2 + ArfA – Cryo-EM
    • 4v89 – EcRibosome + RF-3
    • 6gxp – EcRibosome + RF-3 – Cryo EM
    • 4v85 – EcRibosome + RF-3 + mRNA + antibiotic
    • 6gwt, 6gxm, 6gxn, 6gxo – EcRibosome + RF-1+ RF-3 + P-site tRNA – Cryo-EM
  • 70S ribosome complex with various proteins
    • 4v5b – EcRibosome + PDF-binding helix
    • 4v5h – EcRibosome + Tnac leader peptide
    • 7pjs, 7pjt – EcRibosome + tRNA – Cryo EM
    • 7o1a, 7o19, 7oiz, 7p3k – EcRibosome + Tnac leader peptide – Cryo EM
    • 3j9y, 4v6v - EcRibosome+ tetracycline resistance protein + mRNA + P-tRNA – Cryo-EM
    • 6vwl, 6vwm, 6vwn – EcRibosome + HIV FSS – Cryo-EM
    • 7d6z – EcRibosome + peptide deformylase + trigger factor – Cryo-EM
    • 7d80 – EcRibosome + peptide deformylase + trigger factor + Met aminopeptidase – Cryo-EM
    • 4v6m – EcRibosome + SecYE – Cryo-EM
    • 4v4g – EcRibosome + protein Y – Cryo-EM
    • 7nww – EcRibosome + CspA – Cryo-EM
    • 7nwt – EcRibosome + virus protein – Cryo-EM
    • 6xe0, 6ztl – EcRibosome + NusG – Cryo-EM
    • 4v7i – EcRibosome +preprotein translocase – Cryo-EM
    • 4v49 - EcRibosome +general stress protein Ctc – Cryo-EM
    • 4v8g, 4v8h – TtRibosome + modulation factor
    • 4v8i - TtRibosome + ribosome-associated inhibitor
    • 4v95 – TtRibosome + YAEJ
    • 4v5k – TtRibosome + colicin E3
    • 4v7j, 4v7k – TtRibosome + toxin RelE
    • 6otr, 6oxa, 6oxi - TtRibosome + toxin YoeB
    • 6cfk – TtRibosome + His-CAM + YfiA
    • 6cfl – TtRibosome + Lys-CAM + YfiA
    • 6fkr – TtRibosome + Tur1A
    • 7jql, 7jqm – TtRibosome + mRNA + tRNA + antimicrobial peptide
    • 5zlu – TtRibosome + ABC-F – Cryo-EM
    • 6dzi – MsRibosome + MPY – Cryo-EM
    • 7msc, 7msh, 7msm, 7msz – MtRibosome + Etta – Cryo-EM
    • 7nhn – Ribosome + ABCF – Listeria monocytogenes – Cryo-EM
    • 6v39, 6v3a – AbRibosome + tRNA – Cryo EM
    • 7p7u - EfRibosome + P-tRNA - Cryo-EM
    • 7nhk – EfRibosome + LsaA – Cryo EM
    • 7p7q, 7p7s, 7p7t – EfRibosome + ABCF – Cryo-EM
  • 70S ribosome complex with tRNA mRNA
    • 6gsj, 6gsk, 6gsl – TtRibosome + A-site tRNA-Thr + mRNA + tRNA-fMet
    • 6n1d – TtRibosome + mRNA + tRNA
    • 6bz7, 6bz8 – TtRibosome + A-site tRNA-Leu
    • 5vpo, 5vpp, 6ndk – TtRibosome + tRNA-SufA6
    • 6n9e, 6n9f – TtRibosome + mRNA + P-site tRNA
    • 6uo1 – TtRibosome + mRNA + A-site tRNA + P-site tRNA + E-site tRNA
    • 6q95, 6q97 – TtRibosome + A-site tRNA – Cryo-EM
    • 6q98 – TtRibosome + P-site tRNA – Cryo-EM
    • 6q9a – TtRibosome + E-site tRNA – Cryo-EM
    • 5uq7 – TtRibosome + A-site tRNA + dnaX – Cryo-EM
    • 5uq8 – TtRibosome + E-site tRNA + dnaX – Cryo-EM
    • 6cfj – TtRibosome + His-CAM + A-site tRNA + P-site tRA + E-site tRNA + mRNA + antibiotic
    • 7mt2, 7mt3, 7mt7 – MtRibosome + P-tRNA + E-tRNA – Cryo-EM
    • 7pju – EcRibosome + A-tRNA + P-tRNA + E-tRNA – Cryo-EM
  • 70S ribosome complex with elongation factor
  • 80S ribosome
  • 80S ribosome complexes
    • 6r6p – hRibosome + XBP1u - Cryo-EM
    • 6zvh – hRibosome + EDF1 - Cryo-EM
    • 6z6n – hRibosome + EBP1 - Cryo-EM
    • 6z6m – hRibosome + EBP1 +EF-2 + SERBP1 - Cryo-EM
    • 6z6l – hRibosome + CCDC124 - Cryo-EM
    • 6zm7 – hRibosome + CCDC124 + EBP1 - Cryo-EM
    • 6z6e – hRibosome + CCDC124 + SARS Nsp1 - Cryo-EM
    • 6zmi – hRibosome + SARS Nsp1 - Cryo-EM
    • 6zmo – hRibosome + EF-1 + SARS Nsp1 - Cryo-EM
    • 6olg, 6oli – hRibosome + drug - Cryo-EM
    • 6olz, 6xa1 – hRibosome + tRNA + drug - Cryo-EM
    • 6ole, 6olf, 6om0, 6om7 – hRibosome + A-site tRNA + P-site tRNA + drug - Cryo-EM
    • 7nfx – hRibosome + SRP + SRP receptor - Cryo-EM
    • 8g61 - hRribosome + mRNA - Cryo EM
    • 6fti, 6ftj - dRibosome + oligosaccharyltransferase + Sec61 - Cryo-EM
    • 6ftg - dRibosome + OST - Cryo-EM
    • 3j0l, 3j0o, 3j0p, 3j0q - rRibosome+ mRNA – Cryo-EM
    • 6mte, 6mtd – rRibosome + EF2 + SERBP1 - Cryo-EM
    • 6d9j, 6d90 – rRibosome + RF-1 + P-site tRNA - Cryo-EM
    • 7o80 – rRibosome + RF-1 +ABCE-1 - Cryo-EM
    • 7nwg – rRibosome + A-tRNA + P-site tRNA + E-tRNA + antibiotic- Cryo-EM
    • 6frk – rRibosome + SRP + SRP receptor - Cryo-EM
    • 6hcj – rRibosome + A-site tRNA + P-site tRNA - Cryo-EM
    • 6mtb – rRibosome + P-site tRNA + Z-site tRNA - Cryo-EM
    • 6mtc – rRibosome + Z-site tRNA + IFRD2 - Cryo-EM
    • 6r5q – rRibosome + XBP1u - Cryo-EM
    • 6r6g – rRibosome + XBP1u + SRP - Cryo-EM
    • 6r7q – rRibosome + XBP1u + Sec61 - Cryo-EM
    • 6t59 – rRibosome +b-tubulin- Cryo-EM
    • 6z6j, 6z6k – rRibosome + Lso2 - Cryo-EM
    • 7nwh, 7nwi – rRibosome + antibiotic – Cryo EM
    • 6p5i, 6p5j, 6p5k, 6p5n, 6ip6, 6ip8, 6zvk, 7a01 - rRibosome + IRES – Cryo-EM
    • 4v6w - DmRibosome + EF2 + guanine nucleotide-binding protein – Cryo-EM
    • 7ls1, 7ls2 – mRibosome + EF2 - Cryo-EM
    • 7osa, 7osm – yRibosome + EF2 + GTP
    • 4v4b – yRibosome + EF2 + antifungal - Cryo-EM
    • 6gqv, 6gqb, 6gq1 – yRibosome + EF2 + mRNA + tRNA - Cryo-EM
    • 5tga, 5tgm – yRibosome + A-site tRNA-Pro
    • 5tbw, 5obm, 5on6 – yRibosome + antibiotic
    • 7azy – yRibosome + antibiotic – Cryo EM
    • 6hd7 – yRibosome + NatA – Cryo EM
    • 6s47 – yRibosome + New1 – Cryo EM
    • 6hhq – yRibosome + C45 – Cryo EM
    • 6q8y – yRibosome + Xrn1 – Cryo EM
    • 7rr5 – yRibosome + Rbg1 + Tma46 – Cryo EM
    • 6xir – yRibosome + ubiquitin – Cryo EM
    • 7of1, 7oh3, 7ohq, 7ohp, 7ohr, 7ohs, 7oht, 7ohu, 7ohv, 7ohw, 7ohx, 7ohy – yRibosome + Nog1-TAP – Cryo EM
    • 6woo – yRibosome + tRNA-Met + eIF5B + GDP – Cryo EM
    • 7b7d – yRibosome + A-tRNA + P-tRNA + EF3 – Cryo EM
    • 7nrc, 7nrd – yRibosome + Gcn1 + A-tRNA + P-tRNA + eIF5A + Rbg2 + Gir2 – Cryo EM
    • 8evp, 8evs, 8evt, 8ewc – y80S ribosome + IRES – Cryo EM
    • 8bqd, 8bqx – y80S ribosome + Map1 – Cryo EM
    • 7mpi, 7mpj – y80S ribosome + Stm1 – Cryo EM
    • 7zw0 – y80S ribosome + FAP – Cryo EM
    • 7zpq, 7zrs, 7zuw – y80S ribosome + RQT – Cryo EM
    • 8cdr, 8ceh, 8cf5, 8civ, 8cku, 8cmj – y80S ribosome + eEF2 – Cryo EM
    • 8eub, 8evq, 8evr, 8ewb – y80S ribosome + IRES + eEF2 + GDP – Cryo EM
    • 6zu5 – Ribosome + Lso2 – Paranosema locustae - Cryo-EM
    • 4v7h - TlRibosome+P-site tRNA – Thermomyces lanuginosus
    • 5umd – PfRibosome + mefloquin - Cryo-EM
    • 5osg – LdRibosome + KSRP - Cryo-EM
    • 6uz7 – Ribosome + E-site tRNA + P-site tRNA + IF5B – Kluyveromyces lactis - Cryo-EM
  • 90S pre-ribosome
  • 100S ribosome
  • Mitoribosome or mitochondrial ribosome
  • 28S small subunit
    • 6gaz – p28S ribosomal subunit – pig - Cryo-EM
    • 3jd5 – b28S ribosomal subunit - Cryo-EM
    • 6sg9, 6sga, 6sgb – Tb28S ribosomal subunit - Cryo-EM
    • 6hiy, 6hiw – Tb28S ribosomal subunit+ IF-3 - Cryo-EM
    • 6yw5 – Nc28S - Cryo-EM
  • 39S large subunit
  • 55S small+large mitoribosome

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Jaime Prilusky, Alexander Berchansky, Wayne Decatur, Michal Harel, Joel L. Sussman
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