6xa1

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Structure of a drug-like compound stalled human translation termination complexStructure of a drug-like compound stalled human translation termination complex

Structural highlights

6xa1 is a 10 chain structure with sequence from Homo sapiens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Electron Microscopy, Resolution 2.8Å
Ligands:, , , , , , , , , , , , , , , , , , , , , , , , , , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

RS13_HUMAN

Publication Abstract from PubMed

Methods to directly inhibit gene expression using small molecules hold promise for the development of new therapeutics targeting proteins that have evaded previous attempts at drug discovery. Among these, small molecules including the drug-like compound PF-06446846 (PF846) selectively inhibit the synthesis of specific proteins, by stalling translation elongation. These molecules also inhibit translation termination by an unknown mechanism. Using cryo-electron microscopy (cryo-EM) and biochemical approaches, we show that PF846 inhibits translation termination by arresting the nascent chain (NC) in the ribosome exit tunnel. The arrested NC adopts a compact alpha-helical conformation that induces 28 S rRNA nucleotide rearrangements that suppress the peptidyl transferase center (PTC) catalytic activity stimulated by eukaryotic release factor 1 (eRF1). These data support a mechanism of action for a small molecule targeting translation that suppresses peptidyl-tRNA hydrolysis promoted by eRF1, revealing principles of eukaryotic translation termination and laying the foundation for new therapeutic strategies.

Selective inhibition of human translation termination by a drug-like compound.,Li W, Chang ST, Ward FR, Cate JHD Nat Commun. 2020 Oct 2;11(1):4941. doi: 10.1038/s41467-020-18765-2. PMID:33009412[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. Li W, Chang ST, Ward FR, Cate JHD. Selective inhibition of human translation termination by a drug-like compound. Nat Commun. 2020 Oct 2;11(1):4941. PMID:33009412 doi:10.1038/s41467-020-18765-2

6xa1, resolution 2.80Å

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OCA