Ferritin 3D structures: Difference between revisions
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**[[3gvy]] – BFR – ''Rhodobacter sphaeroides''<br /> | **[[3gvy]] – BFR – ''Rhodobacter sphaeroides''<br /> | ||
**[[1jgc]] - BFR – ''Rhodobacter capsulatus''<br /> | **[[1jgc]] - BFR – ''Rhodobacter capsulatus''<br /> | ||
**[[1ji4]] – | **[[1ji4]] – HpBFR <br /> | ||
**[[1nf4]], [[1nf6]], [[1nfv]] – BFR – ''Desulfovibrio desulfuricans''<br /> | **[[1nf4]], [[1nf6]], [[1nfv]] – BFR – ''Desulfovibrio desulfuricans''<br /> | ||
**[[3fvb]] – BmBFR - ''Brucelia melitensis''<br /> | **[[3fvb]] – BmBFR - ''Brucelia melitensis''<br /> | ||
Revision as of 12:41, 1 March 2023
3D Structures of Ferritin3D Structures of Ferritin
Updated on 01-March-2023
{"openlevels":0}
- Ferritin
- 6lru, 6lrv, 6lrw, 6lrx, 6ls2 – prFR (mutant) - prawn
- 6j4j, 6j4m – soFR (mutant) – soybean
- 3a68 – soFR from gene SferH4
- 3a9q - soFR from gene SferH4 (mutant)
- 3egm, 3bve, 3bvf, 3bvi, 3bvk, 3bvl – HpFR – Heliobacter pylori
- 1z4a, 1vlg, 6txh, 6txj, 6txn, 7o6d, 7vvs – TmFR – Thermotoga maritime
- 1s3q, 1sq3, 3kx9, 5v5k – AfFR – Archaeoglubus fulgidus
- 1krq – FR – Campylobacter jejuni
- 1eum - EcFR – Escherichia coli
- 1qgh – LiFR - Listeria innocua
- 3qz3 - VcFR – Vibrio cholerae
- 3vnx – FR – Ulva pertusa
- 4ism, 4isp, 4itt, 4itw, 4iwj, 4iwk, 4ixk, 3e6r, 3e6s – PnmFR – Pseudo-nitschia multiseries
- 1z6o – FR – Trichoplusia ni
- 5n5f – FR – Haliangium ochraceum
- 5ouz, 5ouw, 7pf1, 7pf7, 7pf8, 7pf9 – SyFR – Synechococcus
- 6som, 6sop – SyFR (mutant)
- 7dqp – MjFR – Marsupenaeus japonicus
- 6a4u, 7dqo – MjFR (mutant)
- 7vhr – FR – Apostichopus japonicus
- 2jd6, 2jd7 – PfFR - Pyrococcus furiosus
- 7ohf – PfFR – Cryo EM
- 6lru, 6lrv, 6lrw, 6lrx, 6ls2 – prFR (mutant) - prawn
- Ferritin containing Fe
- 7o63, 7o64, 7o65, 7o66, 7o65, 7o68, 7o69, 7o6a, 7o6c, 7owy – hFR mitochondrial + Fe - human
- 6kh0, 6lbc, 6lbd – prFR (mutant) + Fe
- 6kh1, 6kh3, 6kh4, 6kh5 – prFR (mutant) + Fe + Ni
- 7cpi – prFR + Fe + Zn
- 7cpc – prFR + Fe + Ni
- 7ek4, 7ek5, 7ek7 – prFR + Fe + Hg
- 6l55, 6l56, 6l58 – coFR + Fe
- 6lp5 – FR + Fe - clam
- 6lpd – woFR + Fe
- 6lk9 – FR + Fe - salmon
- 7xz4 – FR + Fe - millet
- 5c6f – HpFR (mutant) + Fe
- 6ls3, 7v4v – TmFR + Fe
- 6ls0, 6txi, 6txk, 6txl, 6txm, 7dl5, 7dy8, 7dy9, 7dya, 7dyb, 7xa2 – TmFR (mutant) + Fe
- 4reu – EcFR + Fe
- 4xgs – EcFR (mutant) + Fe2O2
- 4ztt – EcFR (mutant) + Fe2O + Fe2 + Fe + O2
- 4zkh, 4zkw, 4zkx, 4zl5, 4zl6, 4zlw, 4zmc – PnmFR (mutant) + Fe
- 6gkc, 6gka – SyFR + Fe
- 6gkb, 6son, 6soo, 6soq, 6sor, 7pfb, 7pfg, 7pfh, 7pfi, 7pfj, 7pfk – SyFR (mutant) + Fe
- 4cmy – FR + Fe – Chlorobaculum tepidum
- 6sv1 – FR + Fe – Rhodospirillum rubrum
- 6ljg, 7dlb – CgFR (mutant) + Fe – Crassostrea gigas
- 7emk – FR + Fe – Dendrorhynchus sinensis
- 7vt2 – FR + Fe – Azumapecten farreri
- 7die – FR + Fe – Mycoplasma penetrans
- 7vp8 – FR + Fe – Ureaplasma urealyticum
- 7o63, 7o64, 7o65, 7o66, 7o65, 7o68, 7o69, 7o6a, 7o6c, 7owy – hFR mitochondrial + Fe - human
- Ferritin containing other metal ion
- Ferritin light chain (FTL)
- 1fha, 5lg8, 6tsa, 6ts1, 6tsf, 6tsj - hFTL+ Fe
- 6tr9, 6ts0 - hFTL (mutant) + Fe
- 3o7s, 3u90, 6msx, 6gxj – hoFTL - horse
- 4v1w, 6rjh – hoFTL – cryo EM
- 3noz, 3np0, 3np2, 3o7r, 7bom, 7bon, 7emm – hoFTL (mutant)
- 5lg2, 6trz, 6tss, 6tsx - hoFTL + Fe
- 7ryw, 7rzn, 7rzx - hoFTL + Cd
- 7vio - hoFTL (mutant) + Cd
- 6fx9 , 7viq- hoFTL + Au + Cd
- 7vip, 7vir, 7vis, 7vit, 7viu - hoFTL (mutant) + Au + Cd
- 7bd7 - hoFTL + As + Pt + Cd
- 5czu - hoFTL (mutant) + Fe
- 3rav, 3rd0 – hoFTL + barbiturate
- 1lb3, 1h96, 6z3d – mFTL – mouse
- 6zlg - mFTL – Cryo EM
- 6zh5, 6zlq - mFTL + Fe – Cryo EM
- 1fha, 5lg8, 6tsa, 6ts1, 6tsf, 6tsj - hFTL+ Fe
- Ferritin middle subunit (FTM)
- 4das, 1mfr, 1bg7 – bFTM - bullfrog
- 4p18, 5xhi, 5xhm, 5xhn, 5xho – bFTM (mutant)
- 4lpj, 4lqj, 4lqn, 4lqv, 4lyu, 4lyx, 4my7, 3rbc, 3rgd – bFTM + Fe
- 4mjy, 4ml5, 4mn9, 5j8w, 5j93, 5j9v, 5jac, 6iaj, 6iaf, 6i9t, 6i9p – bFTM (mutant) + Fe
- 4lqh, 1mfr, 3ka3 – bFTM + Mg
- 4lpm, 4mku, 5j8s, 3se1, 3sh6, 3shx – bFTM (mutant) + Mg
- 3ka4 – bFTM + Co
- 4lpn, 3ka8, 3ka6, 3ka9 – bFTM (mutant) + Co
- 1bg7 – bFTM + Ca
- 3re7 – bFTM + Cu
- 6i36 – FTM + Fe – Lithobates catesbeianus
- 4das, 1mfr, 1bg7 – bFTM - bullfrog
- Ferritin heavy subunit (FTH)
- 5gou, 5yi5, 6j4a, 6job, 8a5n – hFTH
- 5xb1, 6ipc, 5znd, 6j7g, 6jps, 6ke2, 6ke4 – hFTH (mutant)
- 4oyn, 4y08, 4zjk, 5jkk, 5jkl, 5jkm, 6b8g, 6b8f, 4ykh, 6h6t, 6h6u, 6m52, 6m54, 6wyf, 6wyg, 6wyh, 7k26 – hFTH + Fe
- 6ipp, 7ck8 – hFTH (mutant) + Fe
- 8dnp – hFTH (mutant) + Fe – Cryo EM
- 7jgk, 7jgm, 7jgo, 7jgp, 7jgq – hFTH + Ni
- 7jgl, 7jgn – hFTH + Zn
- 7rrp – hFTH + Zn – Cryo EM
- 5gn8 – hFTH + Ca
- 7ck9 – hFTH + Mg
- 7ke3, 7ke5 – hFTH/EBV epitope
- 7u5l – FTH + Fe – bovine – Cryo EM
- 6v21, 7kod – mFTH – Cryo EM
- 3wnw – mFTH + Fe
- 6sht – mFTH + Fe – Cryo EM
- 5obA – mFTH (mutant) + Fe
- 2z6o – FTH – Trichoplusia ni
- 5gou, 5yi5, 6j4a, 6job, 8a5n – hFTH
- apo-ferritin (apo-FR)
- apo-ferritin light chain (apo-FTL)
- 2fg8 – apo-hFTL + Cs
- 3kxu, 2ffx, 2fg4, 6jee, 6jef - apo-hFTL+ Cd
- 6wx6 - apo-hFTL(mutant) + Ca – Cryo EM
- 6pxm – apo-hoFTL
- 2zg7, 2z5p, 2z5q, 2z5r, 3fi6, 3af7, 5e2d, 5hqo – apo-hoFTL+Pd
- 2zg8, 2zg9, 3af8, 3af9, 3noz, 3np0, 3np2 - apo-hoFTL (mutant)+Pd
- 3o7s, 3wvw - apo-hoFTL+Ru
- 2zur - apo-hoFTL+Rh
- 3o7r, 3wvu, 3wvv - apo-hoFTL (mutant) + Ru
- 4z3b - apo-hoFTL + Mn
- 5axs, 5e1u, 5erj, 5erk, 5ix6, 5mij, 5mik, 2w0o, 3f32, 1ies, 1ier, 1dat, 1aew, 2g4h, 2za6, 6ra8 - apo-hoFTL + Cd
- 6hju, 6hjt – apo-hoFTL + Pt
- 6fj9, 6fx8, 6enw, 6env – apo-hoFTL + Au
- 3f33, 3f34, 3f35, 3f36, 3f37, 3f38, 3f39 - apo-hoFTL+phenols
- 2v2i, 2v2j - apo-hoFTL+haemin
- 2gyd - apo-hoFTL+diaziflurane
- 1xz1 - apo-hoFTL+halothane
- 1xz3 - apo-hoFTL+isoflurane
- 1gwg - apo-hoFTL+I3
- 2v2l, 2v2m, 2v2n, 2v2o, 2v2p, 2v2r, 2v2s - apo-hoFTL (mutant)+haemin
- 4de6 - apo-hoFTL + arachidonic acid
- 1rcc, 1rcd, 1rci – apo-bFTL+tartrate+Mg
- 1rce, 1rcg - apo-bFTL+tartrate+Mn
- 2fg8 – apo-hFTL + Cs
- apo-ferritin heavy chain (apo-FTH)
- 6z6u, 6z9e, 6z9f, 7a6a, 7a6b, 7r5o, 7v66, 8f49 – apo-hFTH – Cryo EM
- 3erz – apo-hFTH+Hg
- 3es3 - apo-hFTH+Au
- 5z91, 5z8s, 5z8j - apo-hFTH (mutant) +Au
- 5vtd – apo-hFTH+ Co
- 5up7 – apo-hFTH+ Ni
- 5n26 – apo-hFTH+ Pt
- 6ftv – apo-hFTH + Ru
- 2fha – apo-hFTH + Ca
- 2cn7, 2fha – apo-hFTH (mutant) + Ca
- 2z6m – hFTH + Zn
- 7k3v, 7k3w, 7vd8 – apo-hFTH + Zn – Cryo EM
- 2chi, 2clu, 2cei, 2cih, 2cn6, 2iu2, 5cmq, 5cmr, 2z6m – apo-hFTH (mutant) + Zn
- 5up8, 5up9 – apo-hFTH+ Zn + oxamate derivative
- 1r03, 3ajo, 5n27 – hFTH + Mg
- 3ajp, 3ajq, 6ipq, 6ipo, 5z8u - hFTH (mutant) + Mg
- 4dyx, 4dyy, 4dyz, 4dz0 – apo-hFTH (mutant) + Cu
- 5gu0, 5gu1, 5gu2, 5gu3, 2za7, 2za8 - apo-hoFTH (mutant) + Cd
- 8en7- apo-mFTH + Fe – Cryo EM
- 6s61 - apo-mFTH + Fe + Zn
- 7a4m , 8emq- apo-mFTH + Fe + Zn – Cryo EM
- 5obb – mFTL + Tb
- 6z6u, 6z9e, 6z9f, 7a6a, 7a6b, 7r5o, 7v66, 8f49 – apo-hFTH – Cryo EM
- Bacterioferritin (BFR) or ferroxidase
- 3gvy – BFR – Rhodobacter sphaeroides
- 1jgc - BFR – Rhodobacter capsulatus
- 1ji4 – HpBFR
- 1nf4, 1nf6, 1nfv – BFR – Desulfovibrio desulfuricans
- 3fvb – BmBFR - Brucelia melitensis
- 2fkz, 2fl0, 1sof – BFR – Azotobacrter vinelandii
- 2wtl, 3qb9, 3uof, 3uoi, 7o6e, 8aey – BFR – Mycobacterium tuberculosis
- 3bkn - MsBFR – Mycobacterium smegmatis
- 3is7, 3is8, 3ise, 3isf, 3r2h, 3r2k, 3r2l, 3r2m, 3r2o, 3r2r, 3r2s, 6nlf, 5d8o – PaBFR – Pseudomonas aeruginosa
- 5d8x, 5d8s, 5d8r, 5d8q, 4tog, 4tof, 4tod, 4tob, 4to9 - PaBFR (mutant)
- 5d8p - PaBFR + Fe
- 5d8y, 4toh, 4toe, 4toc, 4toa - PaBFR (mutant) + Fe
- 6nli, 6nlk, 6nll, 6nlm, 6nln, 6nlj, 7k5e, 7k5f 7k5g, 7k5h - PaBFR + inhibitor
- 6nlg - PaBFR (mutant) + inhibitor
- 4e6k - PaBFR + BFR-associated protein
- 1bfr, 1bcf, 2htn, 2vxi, 3e1j, 3e1l, 3e1m, 3e1n, 3e1p, 3e1o, 3e1q, 2y3q – EcBFR
- 4xku, 4xkt, 4xks, 4u3g - EcBFR (mutant)
- 6p8k, 6p8l – EcBFR + Zn
- 3e2c, 4cvr, 4cvt – EcBFR (mutant) + Zn
- 4cvp, 3ghq - EcBFR (mutant) + Fe
- 4cvs – EcBFR (mutant) + Cd
- 4am2, 4am4, 4am5 – BFR + Fe – Blastochloris viridis
- 5zur - BFR + Fe - Achromobacter
- 5xx9 - ScBFR + Fe – Streptomyces coelicolor
- 6k3o, 6k43, 6k4m - ScBFR + Fe – Cryo EM
- 3gvy – BFR – Rhodobacter sphaeroides
- Thioferritin (TFR)
- 2vzb – TFR – Bacterioides fragilis
- DNA-binding Protein of Starved cells (Dps) or DNA-binding stress response protein
- 3iq1 – VcDps
- 3ge4 – BmDps
- 6hv1 – LiDps
- 2iy4 – Dps + Fe – Listeria monocytogenes
- 2bkc, 2bk6, 2bjy – LiDps (mutant)
- 6hv1 – LiDps – Listeria innocua
- 6hui, 6sev – LiDps + Zn
- 6hvq – LiDps + La
- 6hx2 – LiDps + Co
- 2f7n – DrDps + Co – Deinococcus radiodurans
- 2c2j, 6tb5, 6tgt – DrDps + Fe
- 2c2f, 2c2u – DrDps + Fe + Zn
- 4a25 - Dps + Mn – Kinecoccus radiodurans
- 1tjo, 1tk6, 1tkp, 1tko, 1moj – Dps + Fe – Halobacterium salinarum
- 1o9r – Dps + Fe – Agrobacterium tumefaciens
- 1dps, 1f33, 5xgo, 6b0d, 6gcm, 6qvx, 6zgl – EcDps
- 1f30 – EcDps + Zn
- 1jre – EcDps + Cd
- 1jts, 1l8h, 1l8i – EcDps (mutant)
- 2ux1 – SsDps + Zn – Streptococcus suis
- 2v15 – SsDps + Te
- 2xjm – SsDps + Co
- 2xjn – SsDps + Cu
- 2xjo – SsDps + Ni
- 2xkq – SsDps + Mn
- 2yw6, 2yw7 – MsDps
- 1uvh – MsDps + Fe
- 3ak8, 3ak9 – Dps + Mg – Salmonella enterica
- 1n1q – Dps + Fe2O– Brevibacillus brevis
- 1vei, 1vel, 1veq – MsDps + Fe
- 4dyu – Dps + Zn – Yersinia pestis
- 5hjf, 5hjh - NpDps – Nostoc punctiforme
- 5i4j - NpDps + Zn
- 5h4h - NpDps + Fe
- 2d5k – Dps – Staphylococcus aureus
- 6lkp - Dps + Fe + Zn – Leptolyngbya
- 2chp – Dps MrgA – Bacillus subtilis
- 3iq1 – VcDps