Ferritin 3D structures: Difference between revisions

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**[[6lru]], [[6lrv]], [[6lrw]], [[6lrx]], [[6ls2]] – prFR (mutant) - prawn<br />
**[[6lru]], [[6lrv]], [[6lrw]], [[6lrx]], [[6ls2]] – prFR (mutant) - prawn<br />
**[[6kzy]] – coFR + Cu - cockle<br />
**[[6lpe]] – woFR + Mg - worm<br />
**[[6j4j]], [[6j4m]] – soFR  (mutant) – soybean<br />
**[[6j4j]], [[6j4m]] – soFR  (mutant) – soybean<br />
**[[3a68]] – soFR from gene SferH4<br />
**[[3a68]] – soFR from gene SferH4<br />
**[[3a9q]] - soFR from gene SferH4 (mutant) <br />
**[[3a9q]] - soFR from gene SferH4 (mutant) <br />
**[[3egm]], [[3bve]], [[3bvf]], [[3bvi]], [[3bvk]], [[3bvl]] – HpFR – ''Heliobacter pylori''<br />
**[[3egm]], [[3bve]], [[3bvf]], [[3bvi]], [[3bvk]], [[3bvl]] – HpFR – ''Heliobacter pylori''<br />
**[[1z4a]], [[1vlg]] – TmFR – ''Thermotoga maritime''<br />
**[[1z4a]], [[1vlg]], [[6txh]], [[6txj]], [[6txn]], [[7o6d]], [[7vvs]] – TmFR – ''Thermotoga maritime''<br />
**[[1s3q]], [[1sq3]], [[3kx9]], [[5v5k]] – FR – ''Archaeoglubus fulgidus''<br />
**[[1s3q]], [[1sq3]], [[3kx9]], [[5v5k]] – AfFR – ''Archaeoglubus fulgidus''<br />
**[[1krq]] – FR – ''Campylobacter jejuni''<br />
**[[1krq]] – FR – ''Campylobacter jejuni''<br />
**[[1eum]]  - EcFR – ''Escherichia coli''<br />
**[[1eum]]  - EcFR – ''Escherichia coli''<br />
Line 23: Line 21:
**[[1z6o]] – FR – ''Trichoplusia ni''<br />
**[[1z6o]] – FR – ''Trichoplusia ni''<br />
**[[5n5f]] – FR – ''Haliangium ochraceum''<br />
**[[5n5f]] – FR – ''Haliangium ochraceum''<br />
**[[5ouz]], [[5ouw]] – SyFR – ''Synechococcus''<br />
**[[5ouz]], [[5ouw]], [[7pf1]], [[7pf7]], [[7pf8]], [[7pf9]] – SyFR – ''Synechococcus''<br />
**[[6som]], [[6sop]] – SyFR (mutant) <br />
**[[6som]], [[6sop]] – SyFR (mutant) <br />
**[[6a4u]] – FR (mutant) – ''Marsupenaeus japonicus'' <br />
**[[7dqp]] – MjFR – ''Marsupenaeus japonicus'' <br />
**[[6a4u]], [[7dqo]] – MjFR (mutant) <br />
**[[7vhr]] – FR – ''Apostichopus japonicus'' <br />
**[[2jd6]], [[2jd7]] – PfFR - ''Pyrococcus furiosus'' <br />
**[[2jd6]], [[2jd7]] – PfFR - ''Pyrococcus furiosus'' <br />
**[[6lij]] – CgFR + Mg<br />
**[[7ohf]] – PfFR – Cryo EM<br />


*Ferritin containing Fe
*Ferritin containing Fe


**[[7o63]], [[7o64]], [[7o65]], [[7o66]], [[7o65]], [[7o68]], [[7o69]], [[7o6a]], [[7o6c]], [[7owy]] – hFR mitochondrial + Fe - human<br />
**[[6kh0]], [[6lbc]], [[6lbd]] – prFR (mutant) + Fe <br />
**[[6kh0]], [[6lbc]], [[6lbd]] – prFR (mutant) + Fe <br />
**[[6kh1]], [[6kh3]], [[6kh4]], [[6kh5]] – prFR (mutant) + Fe + Ni<br />
**[[6kh1]], [[6kh3]], [[6kh4]], [[6kh5]] – prFR (mutant) + Fe + Ni<br />
**[[7cpi]] – prFR + Fe + Zn<br />
**[[7cpi]] – prFR + Fe + Zn<br />
**[[7cpc]] – prFR + Fe + Ni<br />
**[[7cpc]] – prFR + Fe + Ni<br />
**[[7ek4]], [[7ek5]], [[7ek7]] – prFR + Fe + Hg<br />
**[[6l55]], [[6l56]], [[6l58]] – coFR + Fe<br />
**[[6l55]], [[6l56]], [[6l58]] – coFR + Fe<br />
**[[6lp5]] – FR + Fe - clam<br />
**[[6lp5]] – FR + Fe - clam<br />
**[[6lpd]] – woFR + Fe <br />
**[[6lpd]] – woFR + Fe <br />
**[[6lk9]] – FR + Fe - salmon<br />
**[[6lk9]] – FR + Fe - salmon<br />
**[[7xz4]] – FR + Fe - millet<br />
**[[5c6f]] – HpFR (mutant) + Fe <br />
**[[5c6f]] – HpFR (mutant) + Fe <br />
**[[6ls3]] – TmFR + Fe<br />
**[[6ls3]], [[7v4v]] – TmFR + Fe<br />
**[[6ls0]] – TmFR (mutant) + Fe<br />
**[[6ls0]], [[6txi]], [[6txk]], [[6txl]], [[6txm]], [[7dl5]], [[7dy8]], [[7dy9]], [[7dya]], [[7dyb]], [[7xa2]] – TmFR (mutant) + Fe<br />
**[[4reu]] – EcFR + Fe<br />
**[[4reu]] – EcFR + Fe<br />
**[[4xgs]] – EcFR (mutant) + Fe2O2<br />
**[[4xgs]] – EcFR (mutant) + Fe2O2<br />
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**[[4zkh]], [[4zkw]], [[4zkx]], [[4zl5]], [[4zl6]], [[4zlw]], [[4zmc]] – PnmFR (mutant) + Fe<br />
**[[4zkh]], [[4zkw]], [[4zkx]], [[4zl5]], [[4zl6]], [[4zlw]], [[4zmc]] – PnmFR (mutant) + Fe<br />
**[[6gkc]], [[6gka]] – SyFR + Fe <br />
**[[6gkc]], [[6gka]] – SyFR + Fe <br />
**[[6gkb]], [[6son]], [[6soo]], [[6soq]], [[6sor]] – SyFR (mutant) + Fe <br />
**[[6gkb]], [[6son]], [[6soo]], [[6soq]], [[6sor]], [[7pfb]], [[7pfg]], [[7pfh]], [[7pfi]], [[7pfj]], [[7pfk]] – SyFR (mutant) + Fe <br />
**[[4cmy]] – FR + Fe – ''Chlorobaculum tepidum''<br />
**[[4cmy]] – FR + Fe – ''Chlorobaculum tepidum''<br />
**[[6sv1]] – FR + Fe – ''Rhodospirillum rubrum''<br />
**[[6sv1]] – FR + Fe – ''Rhodospirillum rubrum''<br />
**[[6ljg]] – CgFR (mutant) + Fe – ''Crassostrea gigas''<br />
**[[6ljg]], [[7dlb]] – CgFR (mutant) + Fe – ''Crassostrea gigas''<br />
**[[7emk]] – FR + Fe – ''Dendrorhynchus sinensis''<br />
**[[7emk]] – FR + Fe – ''Dendrorhynchus sinensis''<br />
**[[7vt2]] – FR + Fe – ''Azumapecten farreri''<br />
**[[7die]] – FR + Fe – ''Mycoplasma penetrans''<br />
**[[7vp8]] – FR + Fe – ''Ureaplasma urealyticum''<br />
*Ferritin containing other metal ion
**[[6kzy]] – coFR + Cu - cockle<br />
**[[6lpe]] – woFR + Mg - worm<br />
**[[7x9x]] – TmFR (mutant) + Zn<br />
**[[6lij]] – CgFR + Mg<br />


*Ferritin light chain (FTL)  
*Ferritin light chain (FTL)  


**[[1fha]], [[5lg8]], [[6tsa]], [[6ts1]], [[6tsf]], [[6tsj]] - hFTL+ Fe - human<br />
**[[1fha]], [[5lg8]], [[6tsa]], [[6ts1]], [[6tsf]], [[6tsj]] - hFTL+ Fe <br />
**[[6tr9]], [[6ts0]] - hFTL (mutant) + Fe<br />
**[[6tr9]], [[6ts0]] - hFTL (mutant) + Fe<br />
**[[3o7s]], [[3u90]], [[6msx]], [[6gxj]] – hoFTL - horse<br />
**[[3o7s]], [[3u90]], [[6msx]], [[6gxj]] – hoFTL - horse<br />
**[[4v1w]], [[6rjh]] – hoFTL – cryo EM<br />
**[[4v1w]], [[6rjh]] – hoFTL – cryo EM<br />
**[[3noz]], [[3np0]], [[3np2]], [[3o7r]], [[7bom]], [[7bon]] – hoFTL (mutant) <br />
**[[3noz]], [[3np0]], [[3np2]], [[3o7r]], [[7bom]], [[7bon]], [[7emm]] – hoFTL (mutant) <br />
**[[5lg2]] - hoFTL + Fe<br />
**[[5lg2]], [[6trz]], [[6tss]], [[6tsx]] - hoFTL + Fe<br />
**[[6fx9]] - hoFTL + Au + Cd<br />
**[[7ryw]], [[7rzn]], [[7rzx]] - hoFTL + Cd<br />
**[[7vio]] - hoFTL (mutant) + Cd<br />
**[[6fx9]] , [[7viq]]- hoFTL + Au + Cd<br />
**[[7vip]], [[7vir]], [[7vis]], [[7vit]], [[7viu]] - hoFTL (mutant) + Au + Cd<br />
**[[7bd7]] - hoFTL + As + Pt + Cd<br />
**[[7bd7]] - hoFTL + As + Pt + Cd<br />
**[[5czu]] - hoFTL (mutant) + Fe<br />
**[[5czu]] - hoFTL (mutant) + Fe<br />
**[[3rav]], [[3rd0]] – hoFTL + barbiturate
**[[3rav]], [[3rd0]] – hoFTL + barbiturate
**[[1lb3]], [[1h96]], [[6z3d]] – mFTL – mouse<br />
**[[1lb3]], [[1h96]], [[6z3d]] – mFTL – mouse<br />
**[[6zlg]] - mFTL – Cryo EM<br />
**[[6zh5]], [[6zlq]] - mFTL + Fe – Cryo EM<br />
**[[6zh5]], [[6zlq]] - mFTL + Fe – Cryo EM<br />


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**[[4das]], [[1mfr]], [[1bg7]] – bFTM - bullfrog<br />
**[[4das]], [[1mfr]], [[1bg7]] – bFTM - bullfrog<br />
**[[4p18]], [[5xhi]], [[5xhm]], [[5xhn]], [[5xho]] – bFTM (mutant) <br />
**[[4p18]], [[5xhi]], [[5xhm]], [[5xhn]], [[5xho]] – bFTM (mutant) <br />
**[[4lpj]], [[4lqj]], [[6i36]], [[4lqv]], [[4lyu]], [[4lyx]], [[4my7]], [[3rbc]], [[3rgd]] – bFTM + Fe <br />
**[[4lpj]], [[4lqj]], [[4lqn]], [[4lqv]], [[4lyu]], [[4lyx]], [[4my7]], [[3rbc]], [[3rgd]] – bFTM + Fe <br />
**[[4mjy]], [[4ml5]], [[4mn9]], [[5j8w]], [[5j93]], [[5j9v]], [[5jac]], [[6iaj]], [[6iaf]], [[6i9t]], [[6i9p]] – bFTM (mutant) + Fe<br />
**[[4mjy]], [[4ml5]], [[4mn9]], [[5j8w]], [[5j93]], [[5j9v]], [[5jac]], [[6iaj]], [[6iaf]], [[6i9t]], [[6i9p]] – bFTM (mutant) + Fe<br />
**[[4lqh]], [[1mfr]], [[3ka3]] – bFTM + Mg<br />
**[[4lqh]], [[1mfr]], [[3ka3]] – bFTM + Mg<br />
Line 84: Line 101:
*Ferritin heavy subunit (FTH)
*Ferritin heavy subunit (FTH)


**[[5gou]], [[5yi5]], [[6j4a]], [[6job]] – hFTH <br />
**[[5gou]], [[5yi5]], [[6j4a]], [[6job]], [[8a5n]] – hFTH <br />
**[[5xb1]], [[6ipc]], [[5znd]], [[6j7g]], [[6jps]], [[6ke2]], [[6ke4]] – hFTH (mutant)<br />
**[[5xb1]], [[6ipc]], [[5znd]], [[6j7g]], [[6jps]], [[6ke2]], [[6ke4]] – hFTH (mutant)<br />
**[[4oyn]], [[4y08]], [[4zjk]], [[5jkk]], [[5jkl]], [[5jkm]], [[6b8g]], [[6b8f]], [[4ykh]], [[6h6t]], [[6h6u]], [[6m52]], [[6m54]], [[6wyf]], [[6wyg]], [[6wyh]], [[7k26]] – hFTH + Fe<br />
**[[4oyn]], [[4y08]], [[4zjk]], [[5jkk]], [[5jkl]], [[5jkm]], [[6b8g]], [[6b8f]], [[4ykh]], [[6h6t]], [[6h6u]], [[6m52]], [[6m54]], [[6wyf]], [[6wyg]], [[6wyh]], [[7k26]] – hFTH + Fe<br />
**[[6ipp]], [[7ck8]] – hFTH (mutant) + Fe<br />
**[[6ipp]], [[7ck8]] – hFTH (mutant) + Fe<br />
**[[8dnp]] – hFTH (mutant) + Fe – Cryo EM<br />
**[[7jgk]], [[7jgm]], [[7jgo]], [[7jgp]], [[7jgq]] – hFTH + Ni<br />
**[[7jgk]], [[7jgm]], [[7jgo]], [[7jgp]], [[7jgq]] – hFTH + Ni<br />
**[[7jgl]], [[7jgn]] – hFTH + Zn<br />
**[[7jgl]], [[7jgn]] – hFTH + Zn<br />
**[[7rrp]] – hFTH + Zn – Cryo EM<br />
**[[5gn8]] – hFTH + Ca<br />
**[[5gn8]] – hFTH + Ca<br />
**[[7ck9]] – hFTH + Mg<br />
**[[7ck9]] – hFTH + Mg<br />
**[[7ke3]], [[7ke5]] – hFTH/EBV epitope<br />
**[[7u5l]] – FTH + Fe – bovine – Cryo EM<br />
**[[6v21]], [[7kod]] – mFTH – Cryo EM<br />
**[[6v21]], [[7kod]] – mFTH – Cryo EM<br />
**[[3wnw]] – mFTH + Fe<br />
**[[3wnw]] – mFTH + Fe<br />
Line 100: Line 121:
*apo-ferritin (apo-FR)  
*apo-ferritin (apo-FR)  


**[[7zg7]], [[8hhs]] - apo-hFR +Zn – Cryo EM<br />
**[[2clu]], [[2cn6]] - apo-hFR (mutant)+Zn <br />
**[[2clu]], [[2cn6]] - apo-hFR (mutant)+Zn <br />
**[[3h7g]] – apo-hoFR+Au <br />
**[[3h7g]] – apo-hoFR+Au <br />
Line 115: Line 137:
**[[2zg7]], [[2z5p]], [[2z5q]], [[2z5r]], [[3fi6]], [[3af7]], [[5e2d]], [[5hqo]] – apo-hoFTL+Pd<br />
**[[2zg7]], [[2z5p]], [[2z5q]], [[2z5r]], [[3fi6]], [[3af7]], [[5e2d]], [[5hqo]] – apo-hoFTL+Pd<br />
**[[2zg8]], [[2zg9]], [[3af8]], [[3af9]], [[3noz]], [[3np0]], [[3np2]] - apo-hoFTL (mutant)+Pd<br />
**[[2zg8]], [[2zg9]], [[3af8]], [[3af9]], [[3noz]], [[3np0]], [[3np2]] - apo-hoFTL (mutant)+Pd<br />
**[[6env]] – apo-hoFTL+Au<br />
**[[3o7s]], [[3wvw]] - apo-hoFTL+Ru<br />
**[[3o7s]], [[3wvw]] - apo-hoFTL+Ru<br />
**[[2zur]] - apo-hoFTL+Rh<br />
**[[2zur]] - apo-hoFTL+Rh<br />
Line 130: Line 151:
**[[1gwg]] - apo-hoFTL+I3<br />
**[[1gwg]] - apo-hoFTL+I3<br />
**[[2v2l]], [[2v2m]], [[2v2n]], [[2v2o]], [[2v2p]], [[2v2r]], [[2v2s]] - apo-hoFTL (mutant)+haemin<br />
**[[2v2l]], [[2v2m]], [[2v2n]], [[2v2o]], [[2v2p]], [[2v2r]], [[2v2s]] - apo-hoFTL (mutant)+haemin<br />
**[[2fg8]] – apo-hFTL + Cs<br />
**[[3kxu]], [[2ffx]], [[2fg4]] - apo-hFTL+ Cd<br />
**[[1fha]], [[5lg8]] - apo-hFTL+ Fe<br />
**[[4de6]] - apo-hoFTL + arachidonic acid<br />
**[[4de6]] - apo-hoFTL + arachidonic acid<br />
**[[1rcc]], [[1rcd]], [[1rci]] – apo-bFTL+tartrate+Mg<br />
**[[1rcc]], [[1rcd]], [[1rci]] – apo-bFTL+tartrate+Mg<br />
Line 139: Line 157:
*apo-ferritin heavy chain (apo-FTH)  
*apo-ferritin heavy chain (apo-FTH)  


**[[6z6u]], [[6z9e]], [[6z9f]], [[7a6a]], [[7a6b]] – apo-hFTH – Cryo EM<br />
**[[6z6u]], [[6z9e]], [[6z9f]], [[7a6a]], [[7a6b]], [[7r5o]], [[7v66]], [[8f49]] – apo-hFTH – Cryo EM<br />
**[[3erz]] – apo-hFTH+Hg<br />
**[[3erz]] – apo-hFTH+Hg<br />
**[[3es3]] - apo-hFTH+Au<br />
**[[3es3]] - apo-hFTH+Au<br />
**[[5z91]], [[5z8s]], [[5z8j]] - apo-hFTH (mutant) + Au<br />
**[[5z91]], [[5z8s]], [[5z8j]] - apo-hFTH (mutant) +Au<br />
**[[5vtd]] – apo-hFTH+ Co<br />
**[[5vtd]] – apo-hFTH+ Co<br />
**[[5up7]] – apo-hFTH+ Ni<br />
**[[5up7]] – apo-hFTH+ Ni<br />
Line 150: Line 168:
**[[2cn7]], [[2fha]] – apo-hFTH (mutant) + Ca<br />
**[[2cn7]], [[2fha]] – apo-hFTH (mutant) + Ca<br />
**[[2z6m]] – hFTH + Zn<br />
**[[2z6m]] – hFTH + Zn<br />
**[[7k3v]], [[7k3w]] – apo-hFTH + Zn – Cryo EM<br />
**[[7k3v]], [[7k3w]], [[7vd8]] – apo-hFTH + Zn – Cryo EM<br />
**[[2chi]], [[2clu]], [[2cei]], [[2cih]], [[2cn6]], [[2iu2]], [[5cmq]], [[5cmr]], [[2z6m]]  – apo-hFTH (mutant) + Zn<br />
**[[2chi]], [[2clu]], [[2cei]], [[2cih]], [[2cn6]], [[2iu2]], [[5cmq]], [[5cmr]], [[2z6m]]  – apo-hFTH (mutant) + Zn<br />
**[[5up8]], [[5up9]] – apo-hFTH+ Zn + oxamate derivative<br />
**[[5up8]], [[5up9]] – apo-hFTH+ Zn + oxamate derivative<br />
Line 157: Line 175:
**[[4dyx]], [[4dyy]], [[4dyz]], [[4dz0]] – apo-hFTH (mutant) + Cu<br />
**[[4dyx]], [[4dyy]], [[4dyz]], [[4dz0]] – apo-hFTH (mutant) + Cu<br />
**[[5gu0]], [[5gu1]], [[5gu2]], [[5gu3]], [[2za7]], [[2za8]] - apo-hoFTH (mutant) + Cd<br />
**[[5gu0]], [[5gu1]], [[5gu2]], [[5gu3]], [[2za7]], [[2za8]] - apo-hoFTH (mutant) + Cd<br />
**[[8en7]]- apo-mFTH + Fe – Cryo EM<br />
**[[6s61]] - apo-mFTH + Fe + Zn<br />
**[[6s61]] - apo-mFTH + Fe + Zn<br />
**[[7a4m]] - apo-mFTH + Fe + Zn – Cryo EM<br />
**[[7a4m]] , [[8emq]]- apo-mFTH + Fe + Zn – Cryo EM<br />
**[[5obb]] – mFTL + Tb<br />
**[[5obb]] – mFTL + Tb<br />


*Ferritin light+heavy chains
*Bacterioferritin (BFR) or ferroxidase
 
**[[5gn8]] – hFTH + Ca<br />
 
*Bacterioferritin (BFR) 0r ferroxidase


**[[3gvy]] – BFR – ''Rhodobacter sphaeroides''<br />
**[[3gvy]] – BFR – ''Rhodobacter sphaeroides''<br />
Line 173: Line 188:
**[[3fvb]] – BmBFR - ''Brucelia melitensis''<br />
**[[3fvb]] – BmBFR - ''Brucelia melitensis''<br />
**[[2fkz]], [[2fl0]], [[1sof]] – BFR – ''Azotobacrter vinelandii''<br />
**[[2fkz]], [[2fl0]], [[1sof]] – BFR – ''Azotobacrter vinelandii''<br />
**[[2wtl]], [[3qb9]], [[3uof]], [[3uoi]], [[7o6e]] – BFR – ''Mycobacterium tuberculosis''<br />
**[[2wtl]], [[3qb9]], [[3uof]], [[3uoi]], [[7o6e]], [[8aey]] – BFR – ''Mycobacterium tuberculosis''<br />
**[[3bkn]] - MsBFR – ''Mycobacterium smegmatis''<br />
**[[3bkn]] - MsBFR – ''Mycobacterium smegmatis''<br />
**[[3is7]], [[3is8]], [[3ise]], [[3isf]], [[3r2h]], [[3r2k]], [[3r2l]], [[3r2m]], [[3r2o]], [[3r2r]], [[3r2s]], [[6nlf]], [[5d8o]] – PaBFR – ''Pseudomonas aeruginosa''<br />
**[[3is7]], [[3is8]], [[3ise]], [[3isf]], [[3r2h]], [[3r2k]], [[3r2l]], [[3r2m]], [[3r2o]], [[3r2r]], [[3r2s]], [[6nlf]], [[5d8o]] – PaBFR – ''Pseudomonas aeruginosa''<br />
Line 188: Line 203:
**[[4cvp]], [[3ghq]] - EcBFR (mutant) + Fe<br />
**[[4cvp]], [[3ghq]] - EcBFR (mutant) + Fe<br />
**[[4cvs]] – EcBFR (mutant) + Cd<br />
**[[4cvs]] – EcBFR (mutant) + Cd<br />
**[[4am2]], [[4am4]], [[4am5]] – BFR + Fe – ''Blastochloris viridis''<br />
**[[4am2]], [[4am4]], [[4am5]] – BFR + Fe – ''Blastochloris viridis''
**[[5zur]] - BFR + Fe - ''Achromobacter''<br />
**[[5zur]] - BFR + Fe - ''Achromobacter''<br />
**[[5xx9]] - ScBFR + Fe – ''Streptomyces coelicolor''<br />
**[[5xx9]] - ScBFR + Fe – ''Streptomyces coelicolor''<br />

Revision as of 12:39, 1 March 2023

3D Structures of Ferritin3D Structures of Ferritin

Updated on 01-March-2023

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman, Jaime Prilusky
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