ATPase is an enzyme which catalyzes the breakdown of ATP into ADP and a phosphate ion. This dephosphorylation releases energy which the enzyme uses to drive other reactions. ATPase types include:

  • F-ATPase - the prime producers of ATP;
  • V-ATPase or Vacuolar-type H+ ATPase couples the energy to proton transport across membranes. For details see V-ATPase;
  • A-ATPase are found in archaea. For details see A-ATP Synthase;
  • P-ATPase transport ions;
  • E-ATPase hydrolyze extracellular ATP.
  • MipZ is an ATPase which forms a complex with the chromosome partitioning protein ParB and is responsible for the regulation of FtsZ ring formation.

ATPase domains include metal-binding domain (MBD) and nucleotide-binding domain (NBD). For more details see:



An ATPase, Human RuvB-like 1 dodecamer complex with ADP (PDB code 2c9o)

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3D Structures of ATPase3D Structures of ATPase

Updated on 25-March-2018

V-ATPaseV-ATPase

(mutant)

    • 3i72, 3i73, 3ikj - TtATPS subunit A (mutant)
    • 4o1s - ATPS subunit A – Thermoplasma volcanium
    • 5i1m – yATPase
    • 5bn5 – NeATPase + NEQ263 – Nanoarchaeum equitans
    • 5bn4 – NeATPase + NEQ263 + ANP
    • 5bn3 – NeATPase + NEQ263 + ADP
  • V-ATPase subunit B
    • 2c61 - MmATPS subunit B – Methanosarcina mazei
    • 2rkw, 3b2q, 3ssa, 3tgw, 3tiv - MmATPS subunit B (mutant)
    • 3dsr - MmATPS subunit B+ADP
    • 3eiu - MmATPS subunit B+ATP
  • V-ATPase subunit C
    • 1u7l, 3u2f, 3u2y, 3u32, 3ud0 - yATPS subunit C
    • 3v3c - ATPS subunit C - pea
    • 1ijp, 1l6t – EcF1-ATPS subunit C (mutant) – Escherichia coli - NMR
    • 1r5z, 1v9m - TtATPS subunit C – Thermus thermophilus
    • 3lg8 - MtATPS subunit C C-terminal
    • 2w5j - sATPS subunit C - spinach
    • 2wie, 2xqs, 2xqt, 2xqu - ATPS subunit C – Arthrospira platensis
    • 3zk1, 3zk2 - ATPS subunit C – Fusobacterium nucleatum<br />
  • V-ATPase subunit D+F
    • 4rnd – yATPase subunit D+F
  • V-ATPase subunit E
    • 2kz9 – yATPase subunit E
    • 2dm9, 2dma, 4dt0 - PhATPS subunit E – Pyrococcus horikoshii
    • 2kk7 - MjATPS subunit E – Methanocaldococcus jannaschii
    • 3v6i – TtATPS subunit E + VAPC
  • V-ATPase subunit F
    • 2qai - ATPS subunit F – Pyrococcus furiosus
    • 2i4r - ATPS subunit F – Archaeoglobus fulgidus
    • 2ov6 - MmATPS subunit F - NMR
    • 2d00 - TtATPS subunit F
    • 4ix9 – yATP subunit F (mutant)
  • V-ATPase subunit G
    • 2k88 - yATPS subunit G residues 2-58 - NMR
    • 2kwy - yATPS subunit G residues 61-101 - NMR
  • V-ATPase subunit H
    • 1ho8 – yATPS subunit H
  • V-ATPase subunit K
    • 2bl2, 2cyd - EhATPS subunit K – Enterococcus hirae
  • V-ATPase subunit I
    • 3rrk – ATPS subunit I N terminal – Meiothermus ruber
  • V-ATPase multi subunits
    • 4dl0, 4efa - yATPase subunits C,G,E
    • 3w3a - yATPS subunit A,B,D,F
    • 5tj5 - yATPS subunit A,C,C’,C’’,D,E,F
    • 5voz, 5voy, 5vox - yATPS subunit A,C,C’,C’’,D,E,F,H – Cryo EM
    • 6c6l - yATPS subunit A,C,C’,C’’,D,E,F + V0 assembly protein 1
    • 5bw9 - yATPS subunit A,B,D,E,G,H – Cryo EM
    • 5d80 - yATPS subunit A,B,D,E,F,G,H
    • 3a5c, 3a5d - TtATPS subunit A,B,D,F
    • 5tsj - TtATPS subunit A,B,C,D,E,F,G + antibody - Cryo-EM
    • 5gas, 5gar - TtATPS subunit A,B,C,D,E,F,G,I - Cryo-EM
    • 5y60. 5y5z, 5y5y, 5y5x - TtATPS subunit A,B,C,D,E,F,I,K - Cryo-EM
    • 3gqb - TtATPS subunit A (mutant),B (mutant)
    • 3k5b - TtATPS subunit E (mutant)+C
    • 5knd, 5knc, 5knb - EhATPS subunit A,B,D,F

P-ATPaseP-ATPase

  • Cu+2 transporting ATPase
    • 2kmv, 2kmx, 2arf, 2koy – hATPase NBD – human – NMR
    • 2kij - hATPase actuator domain – NMR
    • 1yjr, 1yjt, 1yju, 1yjv - hATPase (mutant) 6th soluble domain – NMR
    • 1y3j, 1y3k - hATPase 5th soluble domain – NMR
    • 2ew9 - hATPase 5th+6th soluble domains – NMR
    • 1s6o, 1s6u, 2lqb - hATPase 2nd soluble domain – NMR
    • 1q8l - hATPase 2nd MBD – NMR
    • 1aw0, 2aw0 - hATPase 4th MBD – NMR
    • 1kvi, 1kvj - hATPase 1st MBD – NMR
    • 5t7l - hATPase 1st MBD + Cu transport protein
    • 3dxs - AtATPase RAN1 MBD (mutant) – Arabidopsis thaliana
    • 5lbd – AtATPase PAA1 N-domain
    • 5lbk – AtATPase PAA2 N-domain
    • 3voy - AfATPase – Archaeoglobus fulgidus – CryoEM
    • 3skx, 3sky - AfATPase NBD
    • 2k1r - hATPase MBD+ ATOX1 – NMR
    • 2rop, 2g9o, 2ga7 - hATPase MBD – NMR
    • 2rml - BsATPase N-terminal – Bacillus subtilis – NMR
    • 2gcf - sATPase N-terminal - Synechocystis – NMR
    • 4a4j - sATPase N-terminal
    • 4a48 - sATPase
    • 2iye - SsATPase catalytic domain – Sulfolobus solfataricus
    • 2yj3 - SsATPase catalytic domain (mutant)
    • 2yj4, 2yj5, 2yj6 - SsATPase catalytic domain (mutant) + nucleotide
    • 1fvq, 1fvs - hATPase – NMR
    • 3cjk – hATPase + Cu transporting protein ATX1
    • 3rfu, 4bbj, 4bev, 4byg – LpATPase – Legionella pneumophila
    • 4f2f - ATPase metal-binding domain – Streptococcus pneumonia
    • 3j08, 3j09 - AfATPase
    • 3a1c – AfATPase + AMPPCP
    • 3a1d - AfATPase + ADP-Mg
    • 3a1e - AfATPase (mutant) + AMPPCP
  • Na/K transporting ATPase
  • Ca+2 transporting ATPase
  • Zn+2 transporting ATPase
    • 2ofg, 2ofh - sATPase N-terminal – NMR
    • 4umw, 4umv - ATPase +Mg – Shigella sonni
  • K+ transporting ATPase
  • As+ transporting ATPase
    • 1ii0, 1f48 - EcATPase
    • 1ihu – EcATPase+Mg+ADP+AlF3
    • 1ii9 - EcATPase
    • 3h84, 3idq, 3a36, 3a37 - yATPase GET3
    • 4pwx, 5bwk - yATPase GET3 + golgi to ER traffic protein + ubiquitin-like protein
    • 5bw8 - yATPase GET3 + golgi to ER traffic protein + ubiquitin-like protein + protein
    • 4xwo - yATPase GET3 + antibody + Sec22
    • 4xvu - yATPase GET3 + antibody + NYV1
    • 4xtr - yATPase GET3 + antibody + pep12p
    • 3sja, 3sjb, 3sjc, 3sjd, 3zs8, 3zs9, 3b2e, 3vlc - yATPase GET3 + GET1 cystolic domain

3ibg - ATPase GET3 – Aspergillus fumigatus

  • H+ transporting ATPase
    • 5ksd - AtATPase C terminal truncated
    • 1mhs - ATPase – Neurospora crassa
  • Na+ transporting ATPase
    • 2db4, 3aou - EhATPase subunit K – Enterococcus hirae
    • 3aon - EhATPase subunits D,G
    • 3vr2 - EhATPase subunits A,B
    • 3vr4, 3vr5 - EhATPase subunits A,B,D,G
    • 3vr3 - EhATPase subunits A,B + AMPPNP
    • 3vr6 - EhATPase subunits A,B,D,G + AMPPNP
    • 1yce - ATPase rotor ring – Ilyobacter tartaricus
  • H/K transporting ATPase
  • Mg+2 transporting ATPase
    • 3gwi – EcATPase P-1 NBD
  • Arg/ornithine transporting ATPase
    • 3md0 – MtATPase+GDP – Mycobacterium tuberculosis
    • 1kmh - ATPase alpha subunit+tentoxin – spinach
    • 1h8e – cATPase+ADP+AlF4+ADP+SO4 - cow
    • 1h8h - cATPase+ AMPPNP
    • 1efr - cATPase+efrapeptin
    • 3fks – yATPase
    • 3ea0 – ATPase ParA, fragment – Chlorobium tepidum
    • 2qen – ATPase (mutant) Walker-type – Pyrococcus abyssi
    • 3cf0, 3cf1, 3cf3 – mATPase NBD+ADP – mouse
    • 3cf2 - mATPase NBD+ADP+AMP-PNP
    • 2r31, 2p4x – PdATPase ATP12
    • 2zd2 – PdATPase (mutant) ATP12
    • 1d8s – EcATPase F1
    • 1vdz – PhATPase subunit A – Pyrococcus horikoshii
  • Monosaccharide transporting ATPase
    • 5dte – AsATPase – Actinobacillus succinogenes
    • 4zjp – AsATPase + ribopyranose
  • RNA-dependent ATPase
    • 3eaq, 3i31, 3i32 – TtATPase fragment
    • 4kbg, 4kbf - TtATPase helicase core domain
    • 5mao - TtATPase RRM domain
    • 4i69, 4i68 - TtATPase RRM domain (mutant)
    • 4i67 - TtATPase RRM domain + RNA
    • 3mwj – TtATPase N-terminal (mutant)
    • 3mwk, 3nbf – TtATPase N-terminal + 8-oxo-AMP
    • 3mwl - TtATPase N-terminal (mutant) + 8-oxoadenine
    • 3nej - TtATPase reca-like domain (mutant)
  • DNA-dependent ATPase
    • 5tnu - ATPase – Sulfolobus tokodaii
  • ATP-dependent ATPase
    • 5txv – EcATPase subunit HSLU
    • 5ji3, 5ji2 – EcATPase subunits HSLU+HSLV
  • Proteasome-associated ATPase
    • 3fp9, 3m9b, 3m9h – MtATPase intern domain
    • 3m91, 3m9d - MtATPase coiled coil domain + protein PUP
    • 5kzf – MtATPase residues 98-609
    • 5kwa – MtATPase residues 22-529
    • 3kw6 – hATPase 5
    • 6epf, 6epe, 6epd, 6epc – rATPase 6 + proteasome – Cryo EM
  • Transitional endoplasmic reticulum ATPase
    • 5c19 – hTer-ATPase (mutant)
    • 3hu1, 3hu2, 3hu3, 5ftn, 5ftm, 5ftl, 5ftk, 5ftj – hTer-ATPase + ATPGS
    • 4ko8, 4kln, 5dyg, 5c18 – hTer-ATPase (mutant) + ATPGS
    • 5dyi – hTer-ATPase + ADP
    • 4kod – hTer-ATPase (mutant) + ADP
    • 3qc8, 3qq8, 3qwz - hTer-ATPase N terminal + FAS-associated factor 1
    • 3qq7 - hTer-ATPase N terminal
    • 3tiw - hTer-ATPase N terminal + E3 ubiquitin-protein ligase peptide
    • 5c1b - hTer-ATPase N terminal + UFD1--SHP peptide
    • 5glf - hTer-ATPase N terminal + derlin-1 peptide
    • 5epp - hTer-ATPase N terminal + rhomboid-related protein 4 peptide
    • 4kdl, 4kdi - hTer-ATPase N terminal + ubiquitin thioesterase OTU1
    • 5b6c - hTer-ATPase N terminal + ubiquitin fusion degradation protein
    • 5ifw, 5ifs - hTer-ATPase + tether containing UBX domain
    • 5x4l - hTer-ATPase + UBX domain-containing protein
    • 5kiy, 5kiw - hTer-ATPase (mutant) + Selenoprotein S
    • 1s3s - mTer-ATPase ND1 domain + P47 C terminal
    • 4rv0 - Ter-ATPase N terminal + nuclear protein localization protein – Drosophila melanogaster
  • Sarcoplasmic/endoplasmic reticulum ATPase
  • LAO/AO transport system ATPase
    • 3nxs – ATPase – Mycobacterium smegmatis
  • DNA double-strand repair ATPase (Rad50)
    • 3aux – MjRad50 – Methanocaldococcus jannaschii
    • 3auy - MjRad50 + ADP
    • 3av0 - MjRad50 + ATP
    • 5f3w - MjRad50 + MRE11 + ATPGS
    • 5dny - MjRad50 + MRE11 + DNA
    • 3qg5 – Rad50 NBD + MRE11 – Thermotoga maritima
    • 3qkr, 3qks, 3qf7 - PfRad50 NBD + MRE11 – Pyrococcus furiosus
    • 4nck, 4nci, 4nch - PfRad50 NBD (mutant)
    • 4ncj - PfRad50 NBD (mutant) + BeF3 + ADP
    • 3qkt - PfRad50 NBD + AMPPNP
    • 3qku - PfRad50 NBD + AMPPNP + MRE11
  • MipZ ATPase

2xit, 2xj4 – CcMipZ – Caulobacter crescentus

2xj9 – CcMipZ (mutant)

  • ATPase Rava
    • 5fl2, 4upf – EcATPase LARA domain + lysine decarboxylase
    • 4upb – EcATPase + lysine decarboxylase – Cryo EM
    • 3nbx – EcATPase Rava + ADP
  • FlaI ATPase
    • 4ihq, 4ii7 – ATPase (mutant) – Sulfolobus acidocaldarius
  • The RuvBL1/RuvBL2 complex (ATPase)



ReferencesReferences

  1. Gorynia S, Bandeiras TM, Pinho FG, McVey CE, Vonrhein C, Round A, Svergun DI, Donner P, Matias PM, Carrondo MA. Structural and functional insights into a dodecameric molecular machine - The RuvBL1/RuvBL2 complex. J Struct Biol. 2011 Sep 10. PMID:21933716 doi:10.1016/j.jsb.2011.09.001

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