Cytochrome C 3D structures: Difference between revisions

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**[[5zkv]] - hoCyt (mutant) <br />
**[[5zkv]] - hoCyt (mutant) <br />
**[[1lc1]], [[1lc2]], [[1m60]], [[1giw]], [[2giw]], [[1akk]], [[2frc]], [[1ocd]] – hoCyt – NMR<BR />
**[[1lc1]], [[1lc2]], [[1m60]], [[1giw]], [[2giw]], [[1akk]], [[2frc]], [[1ocd]] – hoCyt – NMR<BR />
**[[2b4z]], [[6ff5]] – bCyt – bovine<BR />
**[[2b4z]], [[6ff5]] – bCyt – bovine<BR />
**[[5dfs]] – Cyt – spider monkey <br />
**[[5dfs]] – Cyt – spider monkey <br />
Line 59: Line 60:
**[[5wve]] - hoCyt + APAF-1 + caspase-9 – Cryo EM <br />
**[[5wve]] - hoCyt + APAF-1 + caspase-9 – Cryo EM <br />
**[[6suv]] - hoCyt + calixarine <br />
**[[6suv]] - hoCyt + calixarine <br />
**[[8zxr]] - hoCyt + ssr1698<br />
**[[5juy]] - bCyt + APAF-1 + caspase-9 – Cryo EM <br />
**[[5juy]] - bCyt + APAF-1 + caspase-9 – Cryo EM <br />
**[[3j2t]] – bCyt + apoptotic protease-activating factor 1 – Cryo EM<br />
**[[3j2t]] – bCyt + apoptotic protease-activating factor 1 – Cryo EM<br />
**[[7o3c]], [[7o3h]] - mCyt in complex III – Cryo EM <br />
**[[2jti]], [[3tyi]] – yCyt (mutant) + Cyt peroxidase – yeast<BR />
**[[2jti]], [[3tyi]] – yCyt (mutant) + Cyt peroxidase – yeast<BR />
**[[2pcb]] - yCyt + Cyt peroxidase<BR />
**[[2pcb]] - yCyt + Cyt peroxidase<BR />
Line 80: Line 81:
**[[1fs7]], [[1fs8]], [[1fs9]] – WsCyt + small molecule – ''Wolinella succinogenes''<BR />
**[[1fs7]], [[1fs8]], [[1fs9]] – WsCyt + small molecule – ''Wolinella succinogenes''<BR />
**[[5n1t]] – TpCyt + sulfide dehydrogenase + Copc <br />
**[[5n1t]] – TpCyt + sulfide dehydrogenase + Copc <br />
*Cytochrome C in large complexes
**[[8ugd]], [[8uge]], [[8ugf]], [[8ugg]], [[8ugh]], [[8ugi]], [[8ugj]], [[8ugk]], [[8ugr]] - pCyt in respiratory complex III - Cryo EM <br />
**[[8ugl]] - pCyt in respiratory complex IV - Cryo EM <br />
**[[7o3c]], [[7o3h]], [[8iao]], [[8iar]], [[8ib4]], [[8ib7]], [[8ib9]], [[8ibc]], [[8ibd]], [[8ibg]], [[8ic2]], [[8ic5]], [[8pw5]], [[8pw6]], [[8uca]] - mCyt in respiratory complex III – Cryo EM <br />
**[[8p8m]] - mCyt in 60S ribosome subunit – Cryo EM <br />
**[[8bel]], [[8bep]], [[8bpx]], [[8bq5]], [[8bq6]] - Cyt in respiratory complex I+III – ''Arabidopsis thaliana'' - Cryo EM <br />
**[[7z10]], [[8zmt]] - yCyt in respiratory complex IV – Cryo EM <br />
**[[8q1b]] - Cyt in respiratory complex III-IV – fission yeast - Cryo EM <br />
**[[7uea]] - CtCyt in photosystem P480 – Cryo EM <br />
**[[7uea]] - CtCyt in photosystem P480 – Cryo EM <br />
**[[7tgh]], [[7w5z]], [[8bqs]], [[8gym]], [[8gzu]] - TtCyt in respiratory complex – ''Tetrahymena thermophila'' – Cryo EM <br />
**[[8ab6]], [[8ab9]], [[8aba]], [[8abb]], [[8abe]], [[8abf]], [[8abg]], [[8abm]], [[8ac3]], [[8ac4]], [[8ac5]] - YlCyt in respiratory complex III – ''Yarrowia lipolytica'' – Cryo EM <br />
**[[8ab7]], [[8abh]], [[8abi]], [[8abj]] - YlCyt in respiratory complex + drug – Cryo EM <br />
**[[8ab8]], [[8abk]] - YlCyt in respiratory complex + decylubiquinol – Cryo EM <br />
**[[6zid]], [[9j2f]] - Cyt in photosynthetic complex – ''Blastochloris tepida'' – Cryo EM <br />
**[[7vrj]], [[8wdu]] - Cyt in photosynthetic complex – ''Allochromatium tepidum'' – Cryo EM <br />
**[[7y5e]], [[7y7a]] - Cyt in photosynthetic complex – ''Porphyridium purpureum'' – Cryo EM <br />
**[[8k5o]], [[8z82]], [[8z83]] - Cyt in photosynthetic complex – ''Halorhodospira halophila'' – Cryo EM <br />
**[[8wdv]] – AvCyt in photosynthetic complex – ''Allochromatium vinosum'' – Cryo EM
**[[6zhw]], [[6zi4]], [[6zi5]], [[6zi9]], [[6zia]], [[7q7q]] - BvCyt in photosynthetic complex – ''Blastochloris viridis'' <br />
**[[8k9f]], [[8x2j]] - CaCyt in photosynthetic complex III + inhibitor – ''Chloroflexus aurantiacus'' – Cryo EM <br />
**[[8k9e]], [[8ydm]] - CaCyt in photosynthetic complex III - Cryo EM <br />
**[[7ueb]], [[7z6q]] - CtCyt in photosynthetic complex - Cryo EM <br />
**[[7xxf]] - RgCyt in photosynthetic complex – ''Rhodopila globiformis'' - Cryo EM <br />
**[[8zk2]] - Cyt in photosynthetic complex – ''Roseospirillum parvum'' - Cryo EM <br />
**[[7vzg]], [[7vzr]] - Cyt in homodimeric reaction center complex– ''Chloracidobacterium thermophilum'' – Cryo EM <br />
**[[7rh6]], [[8ovc]] - MsCyt in respiratory complex III – ''Mycobacterium smegmatis'' - Cryo EM <br />
**[[7rh7]], [[9ftz]] - MsCyt in respiratory complex III + drug - Cryo EM <br />


*Cytochrome C’
*Cytochrome C’
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**[[1e83]], [[1e84]], [[1e85]], [[1e86]] – Cyt - ''Alcaligenes xylosoxidans''<BR />
**[[1e83]], [[1e84]], [[1e85]], [[1e86]] – Cyt - ''Alcaligenes xylosoxidans''<BR />
**[[1jaf]] – Cyt – ''Rhodocyclus gelatinosus''<BR />
**[[1jaf]] – Cyt – ''Rhodocyclus gelatinosus''<BR />
**[[1bbh]], [[5gyr]] – Cyt – ''Allochromatium vinosum''<br />
**[[1bbh]], [[5gyr]] – AvCyt – ''Allochromatium vinosum''<br />
**[[3vcr]] - CtCyt<br />
**[[3vcr]] - CtCyt<br />
**[[3vrc]] – Cyt – ''Thermochromatium tepidum''<br />
**[[3vrc]] – Cyt – ''Thermochromatium tepidum''<br />
**[[4cx9]] - SfCyt – ''Shewanella frigidimarina''<br />
**[[8brk]] – Cyt – ''Thermus thermophilus'' <br />
**[[4ulv]] - SfCyt + NO <br />
**[[5b3i]], [[8brl]] – HtCyt – ''Hydrogenophilus thermoluteolus'' <br />
**[[6a3k]] – Cyt – ''Shewanella benthica''<br />
**[[8rkp]] – HtCyt + NO<br />
**[[6a3k]] – SbCyt – ''Shewanella benthica''<br />
**[[8h28]] – SbCyt (mutant)
**[[6a3l]] – SvCyt – ''Shewanella violacea''<br />
**[[6a3l]] – SvCyt – ''Shewanella violacea''<br />
**[[5b3i]] – Cyt – ''Hydrogenophilus thermoluteolus'' <br />
**[[6hih]], [[7zrx]], [[7zvz]] – McCyt beta – ''Methylococcus capsulatus''<br />
**[[6hih]] – Cyt β – ''Methylococcus capsulatus''<br />
**[[7zrw]], [[7zs4]], [[7zsv]] – McCyt beta (mutant)<br />
**[[6zsk]], [[7zsx]], [[7zti]] – McCyt beta + CO<br />
**[[7zps]] – McCyt beta + NO<br />
**[[7zqz]], [[7zsw]] – McCyt beta (mutant) + NO<br />
**[[7s5o]] - NeCyt beta – ''Nitrosomonas europaea''


*Cytochrome C’’
*Cytochrome C’’
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*Cytochrome C1
*Cytochrome C1


**[[6fo0]] - bCyt in Bc1 complex – Cryo EM<br />
**[[6fo0]], [[8p65]] - bCyt in bc1 complex – Cryo EM<br />
**[[1l0n]], [[1be3]], [[1bgy]], [[1qcr ]]– bCyt in Bc1 complex<br />
**[[1l0n]], [[1be3]], [[1bgy]], [[1qcr ]]– bCyt in Bc1 complex<br />
**[[6fo6]] - bCyt in Bc1 complex + antimalarial inhibitor – Cryo EM<br />
**[[6fo6]], [[7tz6]] - bCyt in Bc1 complex + antimalarial inhibitor – Cryo EM<br />
**[[1p84]], [[1l0l]], [[6haw]], [[6xvf]] - bCyt in Bc1 complex + inhibitor <br />
**[[1p84]], [[1l0l]], [[6haw]], [[6xvf]], [[6zft]], [[6zfu]], [[7r3v]] - bCyt in Bc1 complex + inhibitor <br />
**[[2fyu]] - bCyt in Bc1 complex (mutant) + inhibitor <br />
**[[2fyu]] - bCyt in Bc1 complex (mutant) + inhibitor <br />
**[[1sqp]], [[1sqq]], [[1sqv]], [[1sqx]], [[2a06]], [[1sqb]], [[1pp9]], [[1ppj]], [[1ntk]], [[1ntm]], [[1ntz]], [[1nu1]] - bCyt in Bc1 complex + substrate<br />
**[[7tay]] - bCyt in Bc1 complex + drug<br />
**[[1ntk]], [[1ntm]], [[1ntz]], [[1nu1]], [[1pp9]], [[1ppj]], [[1sqb]], [[1sqp]], [[1sqq]], [[1sqv]], [[1sqx]], [[2a06]] - bCyt in Bc1 complex + substrate<br />
**[[8iog]] - pCyt in bc1 complex - Cryo EM<br />
**[[8zos]], [[8zow]] - pCyt in bc1 complex + fungicide - Cryo EM<br />
**[[3h1h]], [[1bcc]] - cCyt in Bc1 complex – chicken<br />
**[[3h1h]], [[1bcc]] - cCyt in Bc1 complex – chicken<br />
**[[3h1i]], [[2bcc]], [[3bcc]] - cCyt in Bc1 complex + inhibitor<br />
**[[3h1i]], [[2bcc]], [[3bcc]] - cCyt in Bc1 complex + inhibitor<br />
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**[[1kyo]], 3cx5, 3cxh – yCyt in Bc1 complex <br />
**[[1kyo]], 3cx5, 3cxh – yCyt in Bc1 complex <br />
**[[2ibz]] - yCyt in Bc1 complex + inhibitor<br />
**[[2ibz]] - yCyt in Bc1 complex + inhibitor<br />
**[[6giq]], [[6hu9]], [[6t0b]], [[6t15]], [[6ymx]], [[6ymy]] - yCyt in Bc1 complex – Cryo EM<br />
**[[6giq]], [[6hu9]], [[6t0b]], [[6t15]], [[6ymx]], [[6ymy]], [[8e7s]], [[8ec0]], [[8yin]], [[9etz]] - yCyt in bc1 complex – Cryo EM<br />
**[[1kb9]] – yCyt in Bc1 complex residues 17-368<br />
**[[1kb9]] – yCyt in Bc1 complex residues 17-368<br />
**[[1ezv]] - yCyt in Bc1 complex + antibody FV fragment<br />
**[[1ezv]] - yCyt in Bc1 complex + antibody FV fragment<br />
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**[[2qjk]], [[2qjp]], [[2qjy]] – RsCyt in Bc1 complex + inhibitor <br />
**[[2qjk]], [[2qjp]], [[2qjy]] – RsCyt in Bc1 complex + inhibitor <br />
**[[2fyn]] - RsCyt in Bc1 complex (mutant) <br />
**[[2fyn]] - RsCyt in Bc1 complex (mutant) <br />
**[[8asj]] - RsCyt in Bc1 complex + Ubiquinol-CytC reductase – Cryo EM<br />
**[[5kkz]] - RsCyt in Bc1 complex + Ubiquinol-CytC reductase + fungicide<br />
**[[5kkz]] - RsCyt in Bc1 complex + Ubiquinol-CytC reductase + fungicide<br />
**[[6nin]] - RsCyt in Bc1 complex + Ubiquinol-CytC reductase + stigmatellin <br />
**[[6nin]] - RsCyt in Bc1 complex + Ubiquinol-CytC reductase + stigmatellin <br />
Line 138: Line 177:
**[[2yiu]] - PdCyt in Bc1 complex – ''Paracoccus denitrificans'' <br />
**[[2yiu]] - PdCyt in Bc1 complex – ''Paracoccus denitrificans'' <br />
**[[4xxl]] – Cyt – ''Syderoxydans lithotrophicus'' <br />
**[[4xxl]] – Cyt – ''Syderoxydans lithotrophicus'' <br />
**[[6xi0]], [[6xkt]] - Cyt in Bc1 complex + Ubiquinol-CytC reductase – ''Rhodobacter capsulatus'' – Cryo EM<br />
**[[6xi0]], [[6xkt]], [[6xkv]] - Cyt in Bc1 complex + Ubiquinol-CytC reductase – ''Rhodobacter capsulatus'' – Cryo EM<br />
**[[6kls]], [[6klv]] - AaCyt in Bc1 complex + Rieske-I protein – ''Aquifex aeolicus'' – Cryo EM<br />
**[[6kls]], [[6klv]] - AaCyt in Bc1 complex + Rieske-I protein – ''Aquifex aeolicus'' – Cryo EM<br />
**[[7tlj]], [[8asi]] - CsCyt in bc1 complex – ''Cereibacter sphaeroides'' - Cryo EM<br />
**[[7tce]] - CsCyt in bc1 complex + drug - Cryo EM<br />
**[[8b6j]] - TtCyt in bc1 complex - Cryo EM<br />
**[[8smr]], [[8snh]] – PaCyt in bc1 complex - ''Pseudomonas aeruginosa'' – Cryo EM<br />


*Cytochrome C2
*Cytochrome C2
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**[[2c2c]], [[3c2c]] – Cyt – ''Rhodospirillum rubrum''<BR />
**[[2c2c]], [[3c2c]] – Cyt – ''Rhodospirillum rubrum''<BR />
**[[1i8o]], [[1hh7]], [[1fj0]], [[1i8p]] – RpCyt<BR />
**[[1i8o]], [[1hh7]], [[1fj0]], [[1i8p]] – RpCyt<BR />
**[[1hro]] – Cyt – ''Rhodopila globiformis''<BR />
**[[1hro]] – RgCyt – ''Rhodopila globiformis''<BR />
**[[1cot]] – PdCyt <BR />
**[[1cot]] – PdCyt <BR />
**[[1cry]] - RvCyt<br />
**[[1cry]] - RvCyt<br />
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*Cytochrome C550
*Cytochrome C550


**[[3wu2]], [[4v82]], [[3kzi]], [[3a0b]], [[3a0h]], [[4v62]], [[1izl]], [[5ws6]], [[5ws5]], [[5v2c]], [[5gti]], [[5gth]], [[5b66]], [[5b5e]], [[4ub8]], [[4ub6]], [[4il6]] – Cyt in photosystem II – ''Thermosynechococcus vulcanus''<BR />
**[[3wu2]], [[4v82]], [[3kzi]], [[3a0b]], [[3a0h]], [[4v62]], [[1izl]], [[5ws6]], [[5ws5]], [[5v2c]], [[5gti]], [[5gth]], [[5b66]], [[5b5e]], [[4ub8]], [[4ub6]], [[4il6]], [[8ir5]], [[8ir7]], [[8ir8]], [[8ira]], [[8ird]], [[8ire]], [[8irg]], [[8irh]], [[8iri]] – Cyt in photosystem II – ''Thermosynechococcus vulcanus''<BR />
**[[7d1t]], [[7d1u]], [[7eda]] – TvCyt in photosystem II – Cyo EM<br />
**[[7d1t]], [[7d1u]], [[7eda]] – TvCyt in photosystem II – Cyo EM<br />
**[[7rf1]], [[7rf2]] – Cyt in photosystem II – ''Thermosynechococcus vestitus''-Cryo EM<br />
**[[7rf1]], [[7rf2]], [[7rf4]], [[7rf6]], [[7rf7]], [[8ez5]], [[8f4c]], [[8f4d]], [[8f4e]], [[8f4g]], [[8f4i]], [[8f4j]], [[8f4k]], [[9evx]] – TveCyt in photosystem II – ''Thermosynechococcus vestitus-''Cryo EM<br />
**[[6w1o]], [[6w1p]], [[6w1q]], [[6w1r]], [[6w1u]], [[6w1v]], [[7rf5]], [[7rf8]], [[7yq2]], [[8f4f]], [[8f4h]] – TveCyt in photosystem II <br />
**[[2axt]], [[1w5c]], [[1s5l]], [[5h2f]], [[5tis]], [[5mx2]], [[5kai]], [[5kaf]], [[5e7c]], [[5e79]], [[4tnk]], [[4tnj]], [[4tni]], [[4tnh]], [[4rvy]], [[4pj0]], [[4pbu]], [[4ixr]], [[4ixq]], [[4fby]] - TeCyt in photosystem II – ''Thermosynechococcus elongatus''<BR />
**[[2axt]], [[1w5c]], [[1s5l]], [[5h2f]], [[5tis]], [[5mx2]], [[5kai]], [[5kaf]], [[5e7c]], [[5e79]], [[4tnk]], [[4tnj]], [[4tni]], [[4tnh]], [[4rvy]], [[4pj0]], [[4pbu]], [[4ixr]], [[4ixq]], [[4fby]] - TeCyt in photosystem II – ''Thermosynechococcus elongatus''<BR />
**[[2bgv]] – PvCyt – ''Paracoccus versutus''<BR />
**[[2bgv]] – PvCyt – ''Paracoccus versutus''<BR />
Line 230: Line 274:
**[[1dvv]] - PaCyt (mutant) – NMR<BR />
**[[1dvv]] - PaCyt (mutant) – NMR<BR />
**[[1fi3]], [[2i8f]] - PsCyt (mutant) – NMR<br />
**[[1fi3]], [[2i8f]] - PsCyt (mutant) – NMR<br />
**[[8gth]] – Cyt – ''Roseiflexus castenholzii''
**[[5xec]], [[5xed]] – Cyt551/Cyt552 – ''Hydrogenobacter thermophilus''<br />
**[[5xec]], [[5xed]] – Cyt551/Cyt552 – ''Hydrogenobacter thermophilus''<br />


Line 249: Line 294:


**[[2zzs]] – Cyt – ''Vibrio parahaemolyticus''<BR />
**[[2zzs]] – Cyt – ''Vibrio parahaemolyticus''<BR />
**[[1ft5]], [[1ft6]], [[1bvb]] – Cyt – ''Nitrosomonas europaea''
**[[1ft5]], [[1ft6]], [[1bvb]] – NeCyt


*Cytochrome C555
*Cytochrome C555
Line 260: Line 305:


**[[1s05]] – RpCyt - NMR<BR />
**[[1s05]] – RpCyt - NMR<BR />
**[[8hn3]] – CtCyt 65-143 <br />
**[[8yts]] – TpCyt 546/556<br />


* Cytochrome C557
* Cytochrome C557
Line 269: Line 316:
**[[2x5u]], [[2x5v]] – BvCyt in photosynthetic reaction center – ''Blastochloris viridis'' – Laue<BR />
**[[2x5u]], [[2x5v]] – BvCyt in photosynthetic reaction center – ''Blastochloris viridis'' – Laue<BR />
**[[2wjm]], [[2wjn]], [[3g7f]], [[3d38]], [[2jbl]], [[2i5n]], [[1vrn]], [[1r2c]] - BvCyt in photosynthetic reaction center  
**[[2wjm]], [[2wjn]], [[3g7f]], [[3d38]], [[2jbl]], [[2i5n]], [[1vrn]], [[1r2c]] - BvCyt in photosynthetic reaction center  
*Cytochrome C559
**[[7rcv]], [[8eqm]], [[8tow]], [[9eh5]] – Cyt in photosystem II – ''Synechocystis'' - Cryo EM<br />
**[[8gn0]], [[8gn1]], [[8gn2]], [[8ir6]], [[8ir9]], [[8irb]], [[8irc]], [[8irf]] – TvCyt in photosystem II - Cryo EM<br />
**[[6zi6]], [[7yq7]] – TvCyt in photosystem II <br />
**[[8iwh]] – Cyt in photosystem II – ''Thalassiosira pseudonana'' - Cryo EM<br />


*Cytochrome C562
*Cytochrome C562
Line 291: Line 345:
**[[1jni]] – Cyt small subunit – ''Haemophilus influenzae''
**[[1jni]] – Cyt small subunit – ''Haemophilus influenzae''


*Cytochrome CL
*Cytochrome cL


**[[2d0w]] – Cyt – ''Hyphomicrobium denitrificans''<BR />
**[[2d0w]] – Cyt – ''Hyphomicrobium denitrificans''<BR />
Line 309: Line 363:
**[[1e2r]] – PdCyt + CN  
**[[1e2r]] – PdCyt + CN  


*Cytochrome CH
*Cytochrome cH


**[[1qn2]] – MeCyt  
**[[1qn2]] – MeCyt  


*Cytochrome C xoxg
*Cytochrome C XoxG


**[[6onq]] – MeCyt<br />
**[[6onq]] – MeCyt<br />

Latest revision as of 14:47, 27 February 2025

3D structures of cytochrome C3D structures of cytochrome C

Updated on 27-February-2025

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman