Beta-glucosidase 3D structures: Difference between revisions

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**[[3gno]] - JrGB residues 38-521 – Japanese rice<br />
**[[3gno]] - JrGB residues 38-521 – Japanese rice<br />
**[[2rgl]], [[2rgm ]]- JrGB residues 29-504<br />
**[[2rgl]], [[2rgm ]]- JrGB residues 29-504<br />
**[[3f4v]], [[3f5j]], [[3f5k]], [[3f5l]], [[3scn]], [[3sco]], [[3sct]], [[3scu]], [[3scv]], [[3scw]], [[3scp]], [[3scr]], [[4qll]] - JrGB7 (mutant) <br />
**[[3f4v]], [[3f5j]], [[3f5k]], [[3f5l]], [[3scn]], [[3sco]], [[3sct]], [[3scu]], [[3scv]], [[3scw]], [[3scp]], [[3scr]], [[4qll]] - JrGB 7 (mutant) <br />
**[[7d6a]] – JrGB 18 <br />
**[[2dga]] - wGB residues 1-520 – wheat<br />
**[[2dga]] - wGB residues 1-520 – wheat<br />
**[[1hxj]], [[1e1e]]– ZmGB – Zea mays<br />
**[[1hxj]], [[1e1e]]– ZmGB – Zea mays<br />
Line 20: Line 21:
**[[3aiu]] - rGB residues 50-568 – rye<br />
**[[3aiu]] - rGB residues 50-568 – rye<br />
**[[3ptk]] – rGB – rice<br />
**[[3ptk]] – rGB – rice<br />
**[[7f3a]], [[7z1i]] – GB – ''Arabidopsis thaliana''<br />
**[[5bwf]] – ThGB – ''Trichoderma harzianum''<br />
**[[5bwf]] – ThGB – ''Trichoderma harzianum''<br />
**[[6efu]] – ThGB (mutant)<br />
**[[6efu]] – ThGB (mutant)<br />
**[[5bvu]] – TxGB – ''Thermoanaerobacterium xylanolyticum<''br />
**[[5bvu]], [[8xpc]], [[8xpd]], [[8xpe]] – TxGB – ''Thermoanaerobacterium xylanolyticum<''br />
**[[8i5o]], [[8i5r]] – TxGB (mutant)<br />
**[[4mdo]] – HgGB – ''Humicola grisea''<br />
**[[4mdo]] – HgGB – ''Humicola grisea''<br />
**[[3wh5]], [[3u48]], [[3u4a]], [[5ns6]], [[5wka]] – MeGB – Metagenome<br />
**[[3wh5]], [[3u48]], [[3u4a]], [[5ns6]], [[5wka]], [[8j3m]], [[8j5l]] – MeGB – Metagenome<br />
**[[5ayi]], [[5ayb]], [[5ns7]] – MeGB (mutant)<br />
**[[5ayi]], [[5ayb]], [[5ns7]], [[8j5m]] – MeGB (mutant)<br />
**[[5ju6]] – GB – ''Talaromyces emersonii''<br />
**[[5ju6]] – GB – ''Talaromyces emersonii''<br />
**[[3ahx]] – GB – ''Clostridium cellulovorans''<br />
**[[3ahx]] – GB – ''Clostridium cellulovorans''<br />
**[[7ms2]] – GB – ''Clostridium thermocellum''<br />
**[[3ahy]] – TrGB – ''Trichoderma reesei''<br />
**[[3ahy]] – TrGB – ''Trichoderma reesei''<br />
**[[3abz]] – KmGB – ''Kluyveromyces marxianus''<br />
**[[3abz]] – KmGB – ''Kluyveromyces marxianus''<br />
**[[2x40]] – TnGB3B – ''Thermotoga neapolitana''<br />
**[[2x40]] – TnGB3B – ''Thermotoga neapolitana''<br />
**[[4hz6]], [[6ier]], [[6jfp]] – ubGB – uncultured bacterium
**[[4hz6]], [[6ier]], [[6jfp]], [[7bbs]] – ubGB 15 – uncultured bacterium
**[[3cmj]] - ubGB catalytic domain (mutant)  
**[[3cmj]] - ubGB catalytic domain (mutant)  
**[[2o9p]], [[1bga]] – PpGB – ''Paenibacillus polymyxa''<br />
**[[2o9p]], [[1bga]] – PpGB – ''Paenibacillus polymyxa''<br />
**[[8j9f]] – GB – ''Paenibacillus relictisesami''<br />
**[[2e3z]] – PcGB – ''Phanerochaete crysosporium<''br />
**[[2e3z]] – PcGB – ''Phanerochaete crysosporium<''br />
**[[2vff]], [[1vff]] – GB – ''Pyrococcus horikoshii''<br />
**[[2vff]], [[1vff]] – GB – ''Pyrococcus horikoshii''<br />
Line 41: Line 46:
**[[4bce]] – TtGB (mutant) <br />
**[[4bce]] – TtGB (mutant) <br />
**[[1gon]] – SsGB – ''Streptomyces'' sp. <br />
**[[1gon]] – SsGB – ''Streptomyces'' sp. <br />
**[[7pjj]] – GB – ''Streptomyces scabiel''<br />
**[[1qox]] – GB - ''Bacillus circulans''<br />
**[[1qox]] – GB - ''Bacillus circulans''<br />
**[[1tr1]] - BpGB (mutant) - ''Bacillus polymyxa''<br />
**[[1tr1]] - BpGB (mutant) - ''Bacillus polymyxa''<br />
Line 53: Line 59:
**[[5fjj]] – GB – ''Aspergillus oryzae''<br />
**[[5fjj]] – GB – ''Aspergillus oryzae''<br />
**[[5dt7]], [[5dt5]] – GB – ''Exiguobacterium antarcticum''<br />
**[[5dt7]], [[5dt5]] – GB – ''Exiguobacterium antarcticum''<br />
**[[6wiu]] – GB – ''Exiguobacterium marinum''<br />
**[[7e5j]], [[8wft]], [[8wfu]], [[8wfv]], [[9k72]], [[9k73]] – GB – ''Thermoaerobacterium saccharolyticum''<br />
**[[7dks]] – TxGB (mutant) – ''Thermoaerobacterium xylanolyticum''<br />
**[[6m6m]] – KfGB (mutant) – ''Kribbella flavida''<br />
**[[6ziv]] – GB – ''Alicyclobacillus tengchongensis''<br />
**[[6yn7]] – GB – ''Alicyclobacillus herbarius''<br />
**[[5ogz]] - GB – ''Ruminilostridium thermocellum''<br />
**[[5ogz]] - GB – ''Ruminilostridium thermocellum''<br />
**[[5wvp]], [[5wug]] - GB – ''Paenibacillus barengoltzii''<br />
**[[5wvp]], [[5wug]] - GB – ''Paenibacillus barengoltzii''<br />
Line 59: Line 71:
**[[6r5i]] - PaGB – ''Pseudomonas aeruginosa''<br />
**[[6r5i]] - PaGB – ''Pseudomonas aeruginosa''<br />
**[[6rjk]] - AtGB – ''Agrobacterium tumefaciens''<br />
**[[6rjk]] - AtGB – ''Agrobacterium tumefaciens''<br />
**[[9gci]] - CsGB – ''Caldicellulosinruptor saccharolyticus''<br />
**[[8ht0]] - GB – ''Caldibacillus thermoamylovorans'' <br />
**[[8in1]] - GB – ''Aplysia kurodai''<br />
**[[8kap]] – GB – ''Strerptomyces griseus''<br />
**[[8puo]] - GB – ''Marinomonas''<br />
**[[8idz]] – GB – ''Prevotella copri''<br />


*Beta-glucosidase complex with glucose
*Beta-glucosidase complex with glucose
Line 69: Line 87:
**[[5bx5]] – TxGB + glucose <br />
**[[5bx5]] – TxGB + glucose <br />
**[[4mdp]] – HgGB + glucose<br />
**[[4mdp]] – HgGB + glucose<br />
**[[3wh6]] – MeGB + glucose<br />
**[[3wh6]], [[7wdn]], [[7wdo]], [[7wdp]], [[7wdr]], [[7wds]] – MeGB + glucose<br />
**[[7wdv]] – MeGB (mutant) + glucose<br />
**[[6r5o]] – PaGB + glucose<br />
**[[6r5o]] – PaGB + glucose<br />
**[[6r5p]] – PaGB (mutant) + glucose<br />
**[[6r5p]] – PaGB (mutant) + glucose<br />
**[[6rjm]] – AtGB + glucose<br />
**[[6rjm]] – AtGB + glucose<br />
**[[6sz6]] – GB + glucose – ''Chaetonium thermophilum''<br />
**[[6sz6]] – GB + glucose – ''Chaetonium thermophilum''<br />
**[[8ivy]] – GB (mutant) + glucose – ''Acetivibrio thermocellus''<br />
**[[9gcj]] – CsGB + glucose<br />


*Beta-glucosidase complex with other sugars
*Beta-glucosidase complex with other sugars
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**[[3gnp]], [[3gnr]] - JrGB residues 38-521 + glucoside<br />
**[[3gnp]], [[3gnr]] - JrGB residues 38-521 + glucoside<br />
**[[3aht]], [[3ahv]], [[3scq]], [[3scs]], [[4qlk]], [[4qlj]] – JrGB7 (mutant) + saccharide<br />
**[[3aht]], [[3ahv]], [[3scq]], [[3scs]], [[4qlk]], [[4qlj]] – JrGB7 (mutant) + saccharide<br />
**[[7bzm]] – JrGB 7 + glucoimidazole<br />
**[[7d6b]] – JrGB 18 + gluconolactone<br />
**[[6m6l]] – KfGB + notoginsenoside<br />
**[[3air]] – wGB residues 50-569 + glucoside + dinitrophenol <br />
**[[3air]] – wGB residues 50-569 + glucoside + dinitrophenol <br />
**[[3ais]] - wGB residues 50-569 (mutant) + glucoside + aglycone<br />
**[[3ais]] - wGB residues 50-569 (mutant) + glucoside + aglycone<br />
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**[[6rjo]] – AtGB (mutant) + salicin<br />
**[[6rjo]] – AtGB (mutant) + salicin<br />
**[[6rk2]] – AtGB (mutant) + pyrnose derivative<br />
**[[6rk2]] – AtGB (mutant) + pyrnose derivative<br />
**[[7dkt]], [[7dkw]] – TxGB (mutant) + glucosyl derivative<br />
**[[7dku]], [[7dkx]], [[8i5p]], [[8i5t]] – TxGB (mutant) + cellobiose<br />
**[[7dkv]], [[7dky]] – TxGB (mutant) + cellotriose<br />
**[[8i5q]], [[8i5u]] – TxGB (mutant) + laminaribiose<br />


*Beta-glucosidase complex with inhibitor
*Beta-glucosidase complex with inhibitor
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**[[3qom]], [[4gze]] – PGB – ''Lactobacillus plantarum''<br />
**[[3qom]], [[4gze]] – PGB – ''Lactobacillus plantarum''<br />
**[[2xhy]] – PGB – ''Escherichia coli''<br />
**[[2xhy]] – PGB – ''Escherichia coli''<br />
**[[4b3k]], [[4b3l]] – SpyGB – ''Streptococcus pyogenes''<br />
**[[6wgd]] – PGB – ''Bacillus licheniformis''<br />
**[[5foo]] – SpyGB + inhibitor<br />
**[[4b3k]], [[4b3l]] – SpyPGB – ''Streptococcus pyogenes''<br />
**[[4gpn]] – GB + gentiobiose 6-phosphate – ''Streptococcus mutans''<br />
**[[5foo]] – SpyPGB + inhibitor<br />
**[[4ipl]] – SpGB – ''Streptococcus pneumoniae''<br />
**[[4gpn]] – PGB + gentiobiose 6-phosphate – ''Streptococcus mutans''<br />
**[[4ipn]] – SpGB + thiocellobiose<br />
**[[4ipl]] – SpPGB – ''Streptococcus pneumoniae''<br />
**[[4ipn]] – SpPGB + thiocellobiose<br />
**[[8ysv]] – PGB – ''Enterococcus faecalis''<br />


*Glucan 1,3--glucosidase
*Glucan 1,3--glucosidase see [[Glucanase]]
 
**[[3ur7]], [[3ur8]] – poGGB – potato<br />
**[[4gzi]] – poGGB (mutant) <br />
**[[4gzj]] - poGGB (mutant) + saccharide<br />
**[[3n9k]] – CaGGB + glucoside – ''Candida albicans''<br />
**[[3o6a]] – CaGGB (mutant) <br />


*Raucaffricine-β-glucosidase
*Raucaffricine-β-glucosidase

Latest revision as of 12:14, 2 December 2024

3D structures of Beta-glucosidase3D structures of Beta-glucosidase

Updated on 02-December-2024

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Michal Harel
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