Beta-glucosidase 3D structures: Difference between revisions
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Michal Harel (talk | contribs) New page: ==3D structures of Beta-glucosidase== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Beta-glucosidase **2jfe... |
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{{#tree:id=OrganizedByTopic|openlevels=0| | {{#tree:id=OrganizedByTopic|openlevels=0| | ||
*Beta | *Beta glucosidase | ||
**[[2jfe]], [[3gxd]], [[3gxi]], [[3gxm]] - hGB cystolic – human<br /> | **[[2jfe]], [[3gxd]], [[3gxi]], [[3gxm]] - hGB cystolic – human<br /> | ||
**[[3ke0]], [[3keh]] - hGB (mutant)<br /> | **[[3ke0]], [[3keh]] - hGB (mutant) <br /> | ||
**[[3ahz]] – tGB – termite<br /> | **[[3ahz]] – tGB – termite<br /> | ||
**[[5cg0]] – GB – fall armyworm<br /> | **[[5cg0]] – GB – fall armyworm<br /> | ||
**[[5nbs]] – GB – ''Neurospora crassa''<br /> | |||
**[[3gno]] - JrGB residues 38-521 – Japanese rice<br /> | |||
**[[2rgl]], [[2rgm ]]- JrGB residues 29-504<br /> | |||
**[[3f4v]], [[3f5j]], [[3f5k]], [[3f5l]], [[3scn]], [[3sco]], [[3sct]], [[3scu]], [[3scv]], [[3scw]], [[3scp]], [[3scr]], [[4qll]] - JrGB 7 (mutant) <br /> | |||
**[[7d6a]] – JrGB 18 <br /> | |||
**[[2dga]] - wGB residues 1-520 – wheat<br /> | **[[2dga]] - wGB residues 1-520 – wheat<br /> | ||
**[[1hxj]], [[1e1e]] – ZmGB – | **[[1hxj]], [[1e1e]]– ZmGB – Zea mays<br /> | ||
**[[1e4l]] - ZmGB (mutant) <br /> | **[[1e4l]] - ZmGB (mutant) <br /> | ||
**[[1cbg]] – GB cyanogenic – White clover<br /> | **[[1cbg]] – GB cyanogenic – White clover<br /> | ||
**[[3aiu]] - | **[[3aiu]] - rGB residues 50-568 – rye<br /> | ||
**[[3ptk]], [[ | **[[3ptk]] – rGB – rice<br /> | ||
**[[ | **[[7f3a]], [[7z1i]] – GB – ''Arabidopsis thaliana''<br /> | ||
**[[3ahx]] – | **[[5bwf]] – ThGB – ''Trichoderma harzianum''<br /> | ||
**[[6efu]] – ThGB (mutant)<br /> | |||
**[[5bvu]], [[8xpc]], [[8xpd]], [[8xpe]] – TxGB – ''Thermoanaerobacterium xylanolyticum<''br /> | |||
**[[8i5o]], [[8i5r]] – TxGB (mutant)<br /> | |||
**[[4mdo]] – HgGB – ''Humicola grisea''<br /> | |||
**[[3wh5]], [[3u48]], [[3u4a]], [[5ns6]], [[5wka]], [[8j3m]], [[8j5l]] – MeGB – Metagenome<br /> | |||
**[[5ayi]], [[5ayb]], [[5ns7]], [[8j5m]] – MeGB (mutant)<br /> | |||
**[[5ju6]] – GB – ''Talaromyces emersonii''<br /> | |||
**[[3ahx]] – GB – ''Clostridium cellulovorans''<br /> | |||
**[[7ms2]] – GB – ''Clostridium thermocellum''<br /> | |||
**[[3ahy]] – TrGB – ''Trichoderma reesei''<br /> | **[[3ahy]] – TrGB – ''Trichoderma reesei''<br /> | ||
**[[3abz]] – KmGB – ''Kluyveromyces marxianus''<br /> | **[[3abz]] – KmGB – ''Kluyveromyces marxianus''<br /> | ||
**[[2x40]] – TnGB3B – ''Thermotoga neapolitana''<br /> | **[[2x40]] – TnGB3B – ''Thermotoga neapolitana''<br /> | ||
**[[4hz6]], [[3cmj]] - ubGB catalytic domain (mutant) | **[[4hz6]], [[6ier]], [[6jfp]], [[7bbs]] – ubGB 15 – uncultured bacterium | ||
**[[2o9p]], [[1bga]] – | **[[3cmj]] - ubGB catalytic domain (mutant) | ||
**[[2e3z]] – PcGB – ''Phanerochaete crysosporium'' | **[[2o9p]], [[1bga]] – PpGB – ''Paenibacillus polymyxa''<br /> | ||
**[[8j9f]] – GB – ''Paenibacillus relictisesami''<br /> | |||
**[[2e3z]] – PcGB – ''Phanerochaete crysosporium<''br /> | |||
**[[2vff]], [[1vff]] – GB – ''Pyrococcus horikoshii''<br /> | **[[2vff]], [[1vff]] – GB – ''Pyrococcus horikoshii''<br /> | ||
**[[1oif]], [[1od0]] – TmGB catalytic domain - ''Thermotoga maritima''<br /> | **[[1oif]], [[1od0]] – TmGB catalytic domain - ''Thermotoga maritima''<br /> | ||
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**[[1ug6]] – TtGB - ''Thermus thermophilus''<br /> | **[[1ug6]] – TtGB - ''Thermus thermophilus''<br /> | ||
**[[4bce]] – TtGB (mutant) <br /> | **[[4bce]] – TtGB (mutant) <br /> | ||
**[[1gon]] – SsGB – ''Streptomyces sp.'' <br /> | **[[1gon]] – SsGB – ''Streptomyces'' sp. <br /> | ||
**[[7pjj]] – GB – ''Streptomyces scabiel''<br /> | |||
**[[1qox]] – GB - ''Bacillus circulans''<br /> | **[[1qox]] – GB - ''Bacillus circulans''<br /> | ||
**[[1tr1]] - | **[[1tr1]] - BpGB (mutant) - ''Bacillus polymyxa''<br /> | ||
**[[3ut0]], [[3usz]] – PsGB residues 28-840 – ''Pseudoalteromonas''<br /> | **[[3ut0]], [[3usz]] – PsGB residues 28-840 – ''Pseudoalteromonas''<br /> | ||
**[[3f95]] – PsGB residues 657-840<br /> | **[[3f95]] – PsGB residues 657-840<br /> | ||
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**[[3ta9]] – GB – ''Halothermothrix orenii''<br /> | **[[3ta9]] – GB – ''Halothermothrix orenii''<br /> | ||
**[[3zyz]], [[3zz1]] – GB – ''Hypocrea jecorina''<br /> | **[[3zyz]], [[3zz1]] – GB – ''Hypocrea jecorina''<br /> | ||
**[[4iib]] – AaGB – ''Aspergillus aculeatus''<br /> | **[[4iib]] – AaGB – ''Aspergillus aculeatus''<br /> | ||
**[[5fji]] – GB – ''Aspergillus fumigatus''<br /> | **[[5fji]] – GB – ''Aspergillus fumigatus''<br /> | ||
**[[5fjj]] – GB – ''Aspergillus oryzae''<br /> | **[[5fjj]] – GB – ''Aspergillus oryzae''<br /> | ||
**[[5dt7]], [[5dt5]] – GB – ''Exiguobacterium antarcticum''<br /> | **[[5dt7]], [[5dt5]] – GB – ''Exiguobacterium antarcticum''<br /> | ||
**[[ | **[[6wiu]] – GB – ''Exiguobacterium marinum''<br /> | ||
**[[ | **[[7e5j]], [[8wft]], [[8wfu]], [[8wfv]], [[9k72]], [[9k73]] – GB – ''Thermoaerobacterium saccharolyticum''<br /> | ||
**[[ | **[[7dks]] – TxGB (mutant) – ''Thermoaerobacterium xylanolyticum''<br /> | ||
**[[ | **[[6m6m]] – KfGB (mutant) – ''Kribbella flavida''<br /> | ||
**[[ | **[[6ziv]] – GB – ''Alicyclobacillus tengchongensis''<br /> | ||
**[[ | **[[6yn7]] – GB – ''Alicyclobacillus herbarius''<br /> | ||
**[[ | **[[5ogz]] - GB – ''Ruminilostridium thermocellum''<br /> | ||
**[[ | **[[5wvp]], [[5wug]] - GB – ''Paenibacillus barengoltzii''<br /> | ||
**[[ | **[[5xxl]] - BtGB – ''Bacteroides thetaiotamicron''<br /> | ||
**[[ | **[[6jxg]] - GB – ''Chaetomella raphigera''<br /> | ||
**[[6r5i]] - PaGB – ''Pseudomonas aeruginosa''<br /> | |||
**[[6rjk]] - AtGB – ''Agrobacterium tumefaciens''<br /> | |||
**[[9gci]] - CsGB – ''Caldicellulosinruptor saccharolyticus''<br /> | |||
**[[8ht0]] - GB – ''Caldibacillus thermoamylovorans'' <br /> | |||
**[[8in1]] - GB – ''Aplysia kurodai''<br /> | |||
**[[8kap]] – GB – ''Strerptomyces griseus''<br /> | |||
**[[8puo]] - GB – ''Marinomonas''<br /> | |||
**[[8idz]] – GB – ''Prevotella copri''<br /> | |||
*Beta-glucosidase complex with glucose | |||
**[[3wba]], [[3wbe]] – rGB (mutant) + glucose<br /> | |||
**[[4hz8]] - ubGB (mutant) + glucose<br /> | |||
**[[3vij]] – NkGB (mutant) + glucose<br /> | |||
**[[4i3g]] – GB + glucose – ''Streptomyces venezuelae''<br /> | |||
**[[5jp0]] – GB + glucose – ''Bacterioides ovatus''<br /> | |||
**[[5bx5]] – TxGB + glucose <br /> | |||
**[[4mdp]] – HgGB + glucose<br /> | |||
**[[3wh6]], [[7wdn]], [[7wdo]], [[7wdp]], [[7wdr]], [[7wds]] – MeGB + glucose<br /> | |||
**[[7wdv]] – MeGB (mutant) + glucose<br /> | |||
**[[6r5o]] – PaGB + glucose<br /> | |||
**[[6r5p]] – PaGB (mutant) + glucose<br /> | |||
**[[6rjm]] – AtGB + glucose<br /> | |||
**[[6sz6]] – GB + glucose – ''Chaetonium thermophilum''<br /> | |||
**[[8ivy]] – GB (mutant) + glucose – ''Acetivibrio thermocellus''<br /> | |||
**[[9gcj]] – CsGB + glucose<br /> | |||
*Beta-glucosidase complex with | *Beta-glucosidase complex with other sugars | ||
**[[3gfx]] – hGB + drug<br /> | |||
**[[3vkk]] – hGB + mannose<br /> | |||
**[[2zox]], [[2e9l]], [[2e9m]] - hGB cystolic + glucoside<br /> | **[[2zox]], [[2e9l]], [[2e9m]] - hGB cystolic + glucoside<br /> | ||
**[[3ai0]] – tGB + glucoside<br /> | **[[3ai0]] – tGB + glucoside<br /> | ||
**[[3air]] – wGB residues 50-569 + glucoside + dinitrophenol<br /> | **[[3ptm]], [[3ptq]] – rGB + glucoside<br /> | ||
**[[3aiv]] - rGB residues 50-568 + aglycone<br /> | |||
**[[3aiw]] - rGB residues 50-568 + glucoside + dinitrophenol<br /> | |||
**[[3gnp]], [[3gnr]] - JrGB residues 38-521 + glucoside<br /> | |||
**[[3aht]], [[3ahv]], [[3scq]], [[3scs]], [[4qlk]], [[4qlj]] – JrGB7 (mutant) + saccharide<br /> | |||
**[[7bzm]] – JrGB 7 + glucoimidazole<br /> | |||
**[[7d6b]] – JrGB 18 + gluconolactone<br /> | |||
**[[6m6l]] – KfGB + notoginsenoside<br /> | |||
**[[3air]] – wGB residues 50-569 + glucoside + dinitrophenol <br /> | |||
**[[3ais]] - wGB residues 50-569 (mutant) + glucoside + aglycone<br /> | **[[3ais]] - wGB residues 50-569 (mutant) + glucoside + aglycone<br /> | ||
**[[3aiq]] - wGB residues 50-569 + aglycone<br /> | **[[3aiq]] - wGB residues 50-569 + aglycone<br /> | ||
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**[[1e1f]] - ZmGB + glucoside<br /> | **[[1e1f]] - ZmGB + glucoside<br /> | ||
**[[1h49]], [[1e4n]], [[1e56]] - ZmGB (mutant) + aglycone<br /> | **[[1h49]], [[1e4n]], [[1e56]] - ZmGB (mutant) + aglycone<br /> | ||
**[[1oin]] - TmGBA + glucoside<br /> | **[[1oin]] - TmGBA + glucoside<br /> | ||
**[[5oss]] – | **[[5oss]] – TmGBA + gluco-imidazole<br /> | ||
**[[4hz7]], [[4hz8]] - ubGB residues 18-482 (mutant) + glucoside<br /> | **[[4hz7]], [[4hz8]] - ubGB residues 18-482 (mutant) + glucoside<br /> | ||
**[[2o9s]], [[2o9r]], [[2z1s]] – PpGB + saccharide<br /> | **[[2o9s]], [[2o9r]], [[2z1s]] – PpGB + saccharide<br /> | ||
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**[[1uyq]] - PpGB (mutant) + glucoside<br /> | **[[1uyq]] - PpGB (mutant) + glucoside<br /> | ||
**[[1bgg]] - PpGB + gluconate<br /> | **[[1bgg]] - PpGB + gluconate<br /> | ||
**[[2jie]] - BpGB + glucoside<br /> | **[[2jie]] - BpGB + glucoside <br /> | ||
**[[1e4i]] - BpGB (mutant) + glucoside<br /> | **[[1e4i]] - BpGB (mutant) + glucoside<br /> | ||
**[[2e40]] – PcGB + gluconolactone<br /> | **[[2e40]] – PcGB + gluconolactone <br /> | ||
**[[5xxm]] - BtGB + gluconolactone<br /> | **[[5xxm]] - BtGB + gluconolactone<br /> | ||
**[[5xxo]] - BtGB + sophorotrise<br /> | |||
**[[5xxn]] - BtGB (mutant) + sophorose<br /> | |||
**[[3vif]] - NkGB + gluconolactone – ''Neotermes koshunensis''<br /> | **[[3vif]] - NkGB + gluconolactone – ''Neotermes koshunensis''<br /> | ||
**[[3vig]], [[3vii]] - NkGB + saccharide<br /> | **[[3vig]], [[3vii]] - NkGB + saccharide<br /> | ||
**[[3vih]] – NkGB + glycerol<br /> | **[[3vih]] – NkGB + glycerol<br /> | ||
**[[3vik]], [[3vil]], [[3vim]], [[3vin]], [[3vio]], [[3vip]] – NkGB (mutant) + saccharide<br /> | **[[3vik]], [[3vil]], [[3vim]], [[3vin]], [[3vio]], [[3vip]] – NkGB (mutant) + saccharide<br /> | ||
**[[1gnx]] - SsGB + saccharide - ''Sulfolobus solfataricus''<br /> | **[[1gnx]] - SsGB + saccharide - ''Sulfolobus solfataricus''<br /> | ||
**[[4iic]], [[4iid]], [[4iie]], [[4iif]] – AaGB + drug<br /> | |||
**[[4iig]], [[4iih]] – AaGB + saccharide<br /> | **[[4iig]], [[4iih]] – AaGB + saccharide<br /> | ||
**[[5bx4]] – TxGB + glucoimidazole<br /> | **[[5bx4]] – TxGB + glucoimidazole<br /> | ||
**[[5bx2]] – TxGB + fluoroglucoside<br /> | **[[5bx2]] – TxGB + fluoroglucoside<br /> | ||
**[[3wh7]] – MeGB + fucose<br /> | **[[3wh7]] – MeGB + fucose<br /> | ||
**[[3wh8]] – MeGB + isofagomine<br /> | **[[3wh8]] – MeGB + isofagomine<br /> | ||
**[[ | **[[3ac0]] - KmGB + glucoside<br /> | ||
**[[2x41]], [[2x42]] - TnGB + glucoside<br /> | |||
**[[6r5r]], [[6r5u]], [[6r5v]] – PaGB (mutant) + glucoside<br /> | |||
**[[6r5t]] – PaGB (mutant) + lactose<br /> | |||
**[[6rjo]] – AtGB (mutant) + salicin<br /> | |||
**[[6rk2]] – AtGB (mutant) + pyrnose derivative<br /> | |||
**[[7dkt]], [[7dkw]] – TxGB (mutant) + glucosyl derivative<br /> | |||
**[[7dku]], [[7dkx]], [[8i5p]], [[8i5t]] – TxGB (mutant) + cellobiose<br /> | |||
**[[7dkv]], [[7dky]] – TxGB (mutant) + cellotriose<br /> | |||
**[[8i5q]], [[8i5u]] – TxGB (mutant) + laminaribiose<br /> | |||
*Beta-glucosidase complex with inhibitor | *Beta-glucosidase complex with inhibitor | ||
**[[3rik]], [[3ril]] - hGB + inhibitor<br /> | |||
**[[3rik]], [[3ril | |||
**[[1y7v]] - hGB (mutant) + inhibitor<br /> | **[[1y7v]] - hGB (mutant) + inhibitor<br /> | ||
**[[1e55]] - ZmGB (mutant) + inhibitor<br /> | **[[1e55]] - ZmGB (mutant) + inhibitor<br /> | ||
**[[2wbg]], [[2wc3]], [[2wc4]], [[2vrj]], [[2jal]], [[2j75]], [[2j77]], [[2j78]], [[2j79]], [[2j7b]], [[2j7d]], [[2j7e]], [[2j7f]], [[2j7g]], [[2j7h]], [[2j7c]], [[2ces]], [[2cet]], [[2cbu]], [[2cbv]], [[1uz1]], [[1w3j]], [[1oim]], [[5n6t]], [[5n6s]] – TmGBA + inhibitor | **[[2wbg]], [[2wc3]], [[2wc4]], [[2vrj]], [[2jal]], [[2j75]], [[2j77]], [[2j78]], [[2j79]], [[2j7b]], [[2j7d]], [[2j7e]], [[2j7f]], [[2j7g]], [[2j7h]], [[2j7c]], [[2ces]], [[2cet]], [[2cbu]], [[2cbv]], [[1uz1]], [[1w3j]], [[1oim]], [[5n6t]], [[5n6s]] – TmGBA + inhibitor <br /> | ||
**[[2cer]] – SsGB + inhibitor <br /> | **[[2cer]] – SsGB + inhibitor <br /> | ||
**[[5bx3]] - TxGB + inhibitor<br /> | **[[5bx3]] - TxGB + inhibitor<br /> | ||
**[[5ns8]] | **[[5ns8]] - MeGB (mutant) + inhibitor<br /> | ||
**[[6qwi]], [[6r4k]] - PpGB + inhibitor<br /> | |||
**[[6r5n]] - PaGB + inhibitor<br /> | |||
*6-phospho- | *6-phospho--glucosidase | ||
**[[3eqn]] – WfPGB – White-rot fungus<br /> | |||
**[[3eqo]] – WfPGB + glucolactone<br /> | |||
**[[1h4p]] – PGB I/II – yeast<br /> | **[[1h4p]] – PGB I/II – yeast<br /> | ||
**[[1s6y]] – PGB – ''Geobacillus stearothermophilus''<br /> | **[[1s6y]] – PGB – ''Geobacillus stearothermophilus''<br /> | ||
**[[1up4]] – TmPGB <br /> | **[[1up4]] – TmPGB <br /> | ||
**[[1up6]], [[1up7]] – TmPGB + NAD + G6P<br /> | **[[1up6]], [[1up7]] – TmPGB + NAD + G6P<br /> | ||
**[[3qom]], [[4gze]] | **[[3qom]], [[4gze]] – PGB – ''Lactobacillus plantarum''<br /> | ||
**[[ | **[[2xhy]] – PGB – ''Escherichia coli''<br /> | ||
**[[4b3k]], [[4b3l]] – | **[[6wgd]] – PGB – ''Bacillus licheniformis''<br /> | ||
**[[5foo]] – | **[[4b3k]], [[4b3l]] – SpyPGB – ''Streptococcus pyogenes''<br /> | ||
**[[4gpn]] – | **[[5foo]] – SpyPGB + inhibitor<br /> | ||
**[[4ipl]] – | **[[4gpn]] – PGB + gentiobiose 6-phosphate – ''Streptococcus mutans''<br /> | ||
**[[4ipn]] – | **[[4ipl]] – SpPGB – ''Streptococcus pneumoniae''<br /> | ||
**[[4ipn]] – SpPGB + thiocellobiose<br /> | |||
**[[8ysv]] – PGB – ''Enterococcus faecalis''<br /> | |||
*Glucan 1,3- | *Glucan 1,3--glucosidase see [[Glucanase]] | ||
*Raucaffricine-β-glucosidase | *Raucaffricine-β-glucosidase | ||
**[[3u57]], [[3u5u]] – dpRGB (mutant) – devilpepper<br /> | **[[3u57]], [[3u5u]] – dpRGB (mutant) – devilpepper<br /> | ||
**[[3u5y]] – dpRGB (mutant) | **[[3u5y]] – dpRGB (mutant) + secologanin<br /> | ||
**[[4a3y]], [[4atd]] – seRGB | **[[4a3y]], [[4atd]] – seRGB – serpentwood<br /> | ||
**[[4atl]] – seRGB + glucose<br /> | **[[4atl]] – seRGB + glucose<br /> | ||
**[[4ek7]] – seRGB (mutant)<br /> | **[[4ek7]] – seRGB (mutant)<br /> | ||
**[[3zj6]] – seRGB + inhibitor<br /> | **[[3zj6]] – seRGB + inhibitor<br /> | ||
Line 162: | Line 198: | ||
**[[2jf6]] – seSGB + strictosidine<br /> | **[[2jf6]] – seSGB + strictosidine<br /> | ||
}} | }} | ||
[[Category:Topic Page]] |
Latest revision as of 12:14, 2 December 2024
3D structures of Beta-glucosidase3D structures of Beta-glucosidase
Updated on 02-December-2024