Aminoacyl tRNA Synthetase
Aminoacyl tRNA synthetase (aaRS) or tRNA ligase catalyzes the esterification of a specific amino acid to its cognate tRNA to form an aminoacyl-tRNA. The amino acid is transferred by the ribosome from the aminoacylated-tRNA onto a growing polypeptide chain. Class I of aaRS is a monomer or dimer, it has 2 highly conserved sequence motifs and it aminoacylates at the 2’-OH of an adenosine nucleotide. Class II of aaRS is a dimer or tetramer, it has 3 highly conserved sequence motifs and it aminoacylates at the 3’-OH of an adenosine nucleotide. CP1 domain of RS edits a mischarged aa-tRNA. Some of the crystal structures are complexes of the RS with their reactant analog: amino acid-sulfamoyl adenine (aa-SA).[1].
3D Structures of Aminoacyl tRNA synthetaseAminoacyl tRNA synthetase 3D structures
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3D Structures of Aminoacyl tRNA synthetase3D Structures of Aminoacyl tRNA synthetase
Updated on 12-March-2019
- Glu-RS + small substrates or analogs
- Glu-RS + tRNA
- 1zjw – EcGluRS + Glu-tRNA
- Glu-RS ternary complex
- 3akz, 3al0 – TmGluRS + tRNA + Glu-AMP analog – Thermotoga maritima
- 1o0b, 1o0c - EcGluRS + Glu-tRNA + Glu + AMP
2cv0, 1n77 - TtGluRS + Glu + Glu-tRNA - 1n78 - TtGluRS + Glu-ol + Glu-tRNA
- 2cv1 - TtGluRS + Glu-ol + ATP + Glu-tRNA
- 2cv2 - TtGluRS + Glu-SA + Glu-tRNA
- 2hrk, 2hsm - yGluRS N-terminal + GU4 nucleic-binding protein 1
- 5bmu – hGluRS GST-like domain + EPRS-AIMP3
- 3akz, 3al0 – TmGluRS + tRNA + Glu-AMP analog – Thermotoga maritima
- Ile-RS
- Ile-RS + small substrates or analogs
- Ile-RS ternary complex
- Leu-RS
- Leu-RS + small substrates or analogs
- Leu-RS + tRNA
- 1wz2 – PhLeuRS Leu-tRNA
- Leu-RS ternary complex
- Lys-RS
- Lys-RS + small substrates or analogs
- Lys-RS + tRNA
- Met-RS
- 1a8h – TtMetRS
- 1med, 1mea – EcMetRS Zinc-binding domain - NMR
- 1qqt - EcMetRS residues 2-552
- 2x1l - MsMetRS residues 2-515 – Mycobacterium smegmatis
- 3h97 – EcMetRS residues 2-548 (mutant)
- 3h9c - EcMetRS residues 2-548
- 2d54, 2d5b – TtMetRS (mutant)
- 1woy – TtMetRS residues 1-500 (mutant)
- 2djv – hMetRS WHEP-TRS domain – NMR
- 1pyb – AaMetRS β subunit
- 1rqg – PaMetRS – Pyrococcus abyssi
- 1mkh – PaMetRS C-terminal
- 1a8h – TtMetRS
- Met-RS + small substrates or analogs
- 3kfl – LmMetRS residues 206-747+ Met-adenylate - Leishmania major
- 2x1m - MsMetRS residues 2-515 + Met
- 1p7p, 1pfu, 1pfv, 1pfw - EcMetRS residues 2-548 + Met
- 1pfy - EcMetRS residues 1-551 + Met-SA
- 1f4l - EcMetRS residues 1-551 + Met
- 1pg0 - EcMetRS residues 1-551 + Met-adenylate
- 1pg2 - EcMetRS residues 1-551 + Met + adenine
- 3h99 - EcMetRS residues 2-548 (mutant) + Met
- 3h9b - EcMetRS residues 2-548 (mutant) + azidonorleucine
- 4dlp - BmMetRS + SMet – Brucella melitensis
- 4py2 – BmMetRS + inhibitor
- 3kfl – LmMetRS residues 206-747+ Met-adenylate - Leishmania major
- Met-RS + tRNA
- 2csx – AaMetRS + Met-tRNA
- Met-RS + tRNA
- Met-RS coplex
- Trp-RS
- 1d2r - GsTrpRS
- 3prh – TrpRS (mutant) – Bacillus subtilis
- 3n9i – TrpRS – Yarsinia pestis
- 3m5w – CjTrpRS – Campylobacter jejuni
- 3a04 – ApTrpRS – Aeropyrum pernix
- 3hzr – EhTrpRS – Entamoeba histolytica
- 3i05 – TbTrpRS residues 3-389 – Trypanosoma brucei
- 3hv0 – CpTrpRS residues 206-593 – Cryptosporidium parvum
- 3foc – GlTrpRS – Giardia lamblia
- 1o5t – hTrpRS catalytic fragment
- 1ulh – hTrpRS residues 35-424
- 2el7 – TtTrpRS
- 2ip1, 3kt0 – yTrpRS – yeast
- 2yy5 – TrpRS – Mycoplasma pneumoniae
- 2g36 – TmTrpRS
- 1bks – StTrpRS + pyridoxal phosphate
- 1d2r - GsTrpRS
- Trp-RS + small substrates or analogs
- 3a05 – ApTrpRS + Trp
- 3kt3 – yTrpRS + Trp-adenylate
- 3kt6, 3kt8 – yTrpRS + Trp
- 3jxe – PhTrpRS + Trp-adenylate
- 3fhj, 3ghd – BsTrpRS + Trp + AMP + Pi
- 2quh – hTrpRS + Trp
- 2qui - hTrpRS + Trp-amide + ATP
- 2quj - hTrpRS + Trp-adenylate
- 2quk – hTrpRS + ATP
- 2ov4 – GsTrpRS + adenosine tetraphosphate
- 1i6k, 1i6l, 1i6m – GsTrpRS + Trp-adenylate
- 1yid, 2a4m – DrTrpRS + ATP
- 1yi8, 1yia – DrTrpRS + Trp
- 1mau – GsTrpRS + Trp + ATP
- 1maw, 1m83 - GsTrpRS + ATP
- 1mb2 - GsTrpRS + Trp
- 3tze - TrpRS + Trp - Encephalitozoon cuniculi
- 3tzl - CjTrpRS + Trp + ADP
- 3sz3 - TrpRS + Trp - Vibrio cholerae
- 6dfu - TrpRS + Trp - Haemophillus influenzae
- 3a05 – ApTrpRS + Trp
- Trp-RS + tRNA
- Tyr-RS
- 1tya, 1tyb, 1tyc, 1tyd, 2ts1 – GsTyrRS
- 3qe4, 3d6u, 3d6v, 2pxh, 2hgz, 1u7d – MjTyrRS – Methanocaldococcus jannaschii
- 1u7x, 4hjr, 4hk4- MjTyrRS (mutant)
- 2jan – MtTyrRS
- 1y42 - NcTyrRS – Neurospora crassa
- 2cya – ApTyrRS
- 1n3l - hTyrRS residues 1-364
- 1r6t, 1r6u – yTyrRS (mutant)
- 1jh3 – GsTyrRS C-terminal – NMR
- 1tya, 1tyb, 1tyc, 1tyd, 2ts1 – GsTyrRS
- Tyr-RS + small substrates or analogs
- 3ts1 – GsTyrRS + Tyr-adenylate intermediate
- 4ts1 – GsTyrRS + Tyr
- 3p0h, 3p0i, 3p0j – LmTyrRS + inhibitor
- 3n2y – MjTyrRS + tetrazolyl phenylalanine
- 2zp1 – MjTyrRS (mutant) + Tyr
- 1zh0 - MjTyrRS (mutant) + naphthyl-Ala
- 1zh6 - MjTyrRS (mutant) + acetyl-Phe
- 2ag6 - MjTyrRS (mutant) + bromo-Phe
- 4hjx - MjTyrRS (mutant) + di-fluoro-Tyr
- 2yxn – EcTyrRS residues 1-322 + azido-Tyr
- 1vbm – EcTyrRS + Tyr-SA
- 1vbn – EcTyrRS (mutant) + Tyr-SA
- 1wq3, 1wq4 - EcTyrRS (mutant) + Tyr
- 1x8x – EcTyrRS + Tyr
- 2pid – hTyrRS residues 28-375 + Tyr-SA
- 2j5b – TyrRS residues 2-346 + Tyr-ol – Acanthamoeba polyphaga minivirus
- 2dlc – yTyrRS + tRNA + Tyr-SA
- 2cyb – AfTyrRS + Tyr - Archaeoglobus fulgidus
- 2cyc – PhTyrRS + Tyr
- 1q11 – hTyrRS residues 1-364 + Tyr-ol
- 1h3e - TtTyrRS + Tyr-tRNA + Tyr-ol + ATP
- 1h3f - TtTyrRS + Tyr-ol
- 1jh3 – GsTyrRS C-terminal – NMR
- 1jii, 1jij, 1jil, 1jik – SaTyrRS + inhibitor
- 3ts1 – GsTyrRS + Tyr-adenylate intermediate
- Tyr-RS + tRNA
- Val-RS
- Val-RS ternary complex
- Class II aaRS
- Ala-RS
- Ala-RS + small substrates or analogs
- 3hxu, 3hxv, 3hxw – EcAlaRS catalytic fragment + aa-adenylate
- 3hxz, 3hy0, 3hy1 - EcAlaRS catalytic fragment (mutant) + aa-adenylate
- 3hxx - EcAlaRS catalytic fragment + AMPPCP
- 3hxy - EcAlaRS catalytic fragment + AMPPCP + Ala-AMP + PCP
- 3htz - AaAlaRS residues 2-454 + Ser
- 1yfr – AaAlaRS + ATP
- 1yfs – AaAlaRS + Ala
- 1yft, 1ygb - AaAlaRS catalytic fragment + aa
- 2zzg - PhAlaRS + Ala-SA<br /
- 2ztg – AfAlaRS + Ala-SA
- 3hxu, 3hxv, 3hxw – EcAlaRS catalytic fragment + aa-adenylate
- Asp-RS
- Asp-RS + small substrates or analogs
- Asp-RS + tRNA
- Asp-RS ternary complex
- Asn-RS
- Asn-RS + small substrates or analogs
- Gly-RS
- Gly-RS + small substrates or analogs
- His-RS
- His-RS + small substrates or analogs
- Phe-RS
- Phe-RS + small substrates or analogs
- Phe-RS + tRNA
- 1eiy - TtPheRS α+β chains + Phe-tRNA
- Phe-RS ternary complex
- 2iy5 - TtPheRS α+β chains + Phe-ol + Phe-tRNA
- Pro-RS
- Pro-RS + small substrates or analogs
- Pro-RS ternary complex
- Bifunctional RS (bifunctional glutamate/proline tRNA ligase)
- Pyrrolysyl-RS; domains – RNA-binding 1-101; catalytic 188-454
- Pyrrolysyl-RS binary complex
- 3qtc – MmPylRS catalytic domain (mutant) + AMP-ATP analog
- 2q7e - MmPylRS catalytic domain + ATP analog
- 2q7g - MmPylRS C-terminal+ pyrro-Lys analog+ ATP
- 3vqv - MmPylRS catalytic domain + AMPPNP
- 4bw9, 4cs4, 5k1p, 5k1x - MmPylRS catalytic domain (mutant) + AMPPNP
- 4bwa - MmPylRS catalytic domain (mutant) + adenylated norbornene
- 4ch3, 4ch4, 4ch5, 4ch6 - MmPylRS catalytic domain + adenylated lysine derivative
- 4cs3 - MmPylRS catalytic domain (mutant) + adenylated lysine derivative
- 5ud5 - MmPylRS RNA-binding domain + Pyl-RNA
- 5v6x - MmPylRS RNA-binding domain (mutant) + Pyl-RNA
- 2zni, 2znj – DhPylRS + tRNA
- 3qtc – MmPylRS catalytic domain (mutant) + AMP-ATP analog
- Pyrrolysyl-RS ternary complex
- 2zce - MmPylRS catalytic domain + pyrrolysine + ATP analog
- 2q7g - MmPylRS catalytic domain + pyrrolysine analog + ATP
- 2zim, 2q7h - MmPylRS catalytic domain + adenylated pyrrolysine + pyrophosphate
- 2zio - MmPylRS catalytic domain + AlocLys-AMP + ATP analog
- 3vqy - MmPylRS catalytic domain + butoxycarbonyl lysine + AMPPNP
- 4q6g - MmPylRS catalytic domain + acetyl lysine + ADPNP
- 4tqd - MmPylRS catalytic domain + iodo-Phe + ATP
- 4tqf, 4zib - MmPylRS catalytic domain + bromothienylo-Ala + ATP
- 2zin - MmPylRS catalytic domain + butoxycarbonyl lysine + ATP analog
- 2zce - MmPylRS catalytic domain + pyrrolysine + ATP analog
- Ser-RS
- Ser-RS + small substrates or analogs
- Ser-RS + tRNA
- Ser-RS ternary complex
- Thr-RS
- Thr-RS + small substrates or analogs
- 3pd2, 3pd3, 3pd4, 3pd5 – PaThrRS editing domain + aa-aminoadenosine
- 2hkz – PaThrRS editing domain + Ser
- 2hl0, 2hl1 - PaThrRS editing domain + Ser-adenylate
- 2hl2 - PaThrRS editing domain + Ser-SA
- 1tke - EcThrRS editing domain + Ser
- 1tkg - EcThrRS editing domain + Ser-SA
- 1tky - EcThrRS editing domain + Ser-adenylate
- 1fyf, 1evl - EcThrRS catalytic and anticodon-binding domains + aa-SA
- 1evk - EcThrRS catalytic and anticodon-binding domains + Thr
- 1nyq – SaThrRS + Thr-SA
- 1nyr – SaThrRS + ATP
- 3pd2, 3pd3, 3pd4, 3pd5 – PaThrRS editing domain + aa-aminoadenosine
- Thr-RS + tRNA
- Multifunctional RS
- 1fyj – hRS - NMR