User:David Canner/Sandbox 6
Index of Topics PagesIndex of Topics Pages
Topic pages are pages about proteins or molecules or families of proteins or molecules that are not named with a PDB code. Proteopedia contains a page for each entry in the PDB, created automatically, and these pages generally describe a particular solved structure. A topic page like hemoglobin, however, will address the protein in general, and refer to several solved structures such as 1gzx and 2hbs. And so, topic pages can be thought of as higher up in the heirarchy of page organization in Proteopedia than are PDB-code-titled pages. They are also never created automatically.
means that the article first became available in Proteopedia within the past four months, or that substantial new content was added within the past four months. See also What's New?.
Pages About Molecules (Not Titled with a PDB Code)Pages About Molecules (Not Titled with a PDB Code)
The lists below (organized alphabetically and by category) are intended to include all pages about molecules or families of molecules that have substantial content. Because this list is manually maintained, it may be out of date. For comparison, here is an automatically generated list of all pages whose titles do not begin with a numeral, and here is a list of all pages.
See also: About Macromolecular Structure, a list of pages not listed below.
Alphabetical Index of Topics PagesAlphabetical Index of Topics Pages
- A - C
- AChE inhibitors and substrates, PartII, PartIII
- Acetylcholine
- Acetylcholinesterase
- Acid-beta-glucosidase
- Antibody
- β2-Adrenergic Receptor, A Physical Model of the
- Alpha-1-antitrypsin
- α-hemolsyin
- Amino Acids with info about Selenocysteine and Pyrrolysine
- Angiotensin Converting Enzyme
- Annexin
- Antizyme Inhibitor
- Aquaporin
- ATP Phosphoribosyl Transferase
- Avian Influenza Neuraminidase, Tamiflu and Relenza
- Avidin
- Bacterial Intein-Like Domains (BILs)
- Believe It or Not!
- Biotin Protein Ligase
- C-di-GMP
- C-di-GMP signaling
- Calmodulin in motion
- Chitinases
- Cyt2Ba
- D - L
- David Canner's Favorites
- DHFR
- Dihydrofolate reductase
- Directed evolution
- DNA
- DNA-binding protein VirE2 (Agrobacterium)
- DnaC helicase loader, structure of (E. coli) (homology model)
- Dinoflagellate luciferase
- Doppel
- Dronpa
- Elastase
- Eglin
- Epitopes
- Eran Hodis's Favorites
- Eric Martz's Favorites
- Extremophiles
- Factor IX
- Fibrin
- Ferredoxin
- Filamin
- Flavodoxin
- G3p
- Gelsolin
- Glycine
- The Glutamate Receptor
- Gramicidin Channel in Lipid Bilayer
- Green Fluorescent Protein
- Helix-turn-helix motif]]
- Heme
- Hemoglobin
- hemolsyin
- High school teachers' resources
- Highest impact structures
- Hint auto-proteolytic protein-processing domains
- HIV-1 protease
- HIV-1 Gag
- HIV-1 Gag Recruitment of Tsg101 and the Viral Budding Process
- HIV Drug
- Herpes Simplex Virus Thymidine Kinase
- HMG-CoA Reductase
- IgA
- Influenza hemagglutinin
- Intrinsically Disordered Protein
- Ion channels
- Kink-turn motif
- Kinesin-5
- Lac repressor
- Lactose Permease
- Large Ribosomal Subunit
- Luciferase
- M - P
- Major Histocompatibility Complex Class I: Crucial to your defenses against viruses, and one of the Highest Impact Structures of All Time
- Matrix metalloproteinases
- Mechanosensitive channels: opening and closing (includes morphs)
- Membrane proteins
- Metal-Ligand Polyhedra
- Metalloproteases
- Monoclonal Antibody
- Morphs of conformational changes of macromolecules
- Myoglobin
- NADH quinone oxidoreductase (NQO1)
- Nobel Prizes for 3D Molecular Structure including the 2009 Chemistry Prize for the Ribosome
- Non-Standard Residues, see also Standard Residues
- Nucleoporin
- Nucleosomes
- OhrR
- P53
- Peroxisome Proliferator-Activated Receptor
- PcrA helicase
- Personal favorites
- Phosphoglucose isomerase
- Photosystem II
- Plant Viral Protein p19 Suppression of RNA Silencing
- Porin
- Prion protein
- Proton Channels (Includes an animated morph)
- Pyrrolysine
- Pyruvate phosphate dikinase
- R - Z
- Recombinase A
- Recoverin, a calcium-activated myristoyl switch
- RecQ-Like protein 1, human
- Resolvase
- Reverse transcriptase
- Ribosome
- RNA motifs
- Rop protein
- SGAP
- Scene authoring tools
- SelB Recognition
- Selenocysteine
- Serine Protease
- Serine hydrolase
- Serum Paraoxonase
- Severin
- Sites, Functional
- Standard Residues (see also Non-Standard Residues
- Strictisidine Synthase
- Structures saving the most lives
- Structure of GNNQQNY from Sup35
- Suppression of RNA Silencing by Viruses
- TATA-Binding Protein
- Teaching Strategies Using Proteopedia
- Telomerase
- TEM1-beta-Lactamase/beta-lactamase Inhibitor Protein (BLIP)
- Tetrameric alcohol dehydrogenases
- Thymidine Kinase, Herpes Simplex Virus
- Transcription Termination Factor Rho
- Treatment of Gaucher disease
- Tropomyosin
- Vascular Endothelial Growth Factor
- Vascular Endothelial Growth Factor Receptor
- Villin
- Vinculin
- VirE1/VirE2
- Z-DNA
- Zinc Fingers
- Well Developed PDB Code Pages
- 1d9z The DNA repair protein UVRB in complex with ATP
- 1gm5 Thermotoga maritima RecG in complex with a synthetic three-way DNA junction resembling a stalled replication fork.
- 1eve Acetylcholinesterase complexed with the anti-Alzheimer's disease drug Aricept.
- 1mr4 Antifungal and insecticidal protein NaD1 from Nicotiana
- 1n4n Defensin from Petunia
- 1ogs Human acid-beta-glucosidase
- 1v04 Paraoxonase-1 via directed evolution
- 1xjo Aminopeptidase
- 2cek Torpedo californica acetylcholinesterase (TcAChE) in complex with the bifunctional inhibitor NF595, a potentially new anti-Alzheimer drug.
- 2db3 Drosophila melanogasterDEAD-box helicase protein Vasa.
- 2eyq Escherichia coli Mfd (TRCF, transcription-repair coupling factor).
- 2ic8 Escherichia coli GlpG, an integral membrane protein that belongs to the widespread rhomboid protease family
- 2p18 Leishmania infantum Glyoxalase II
- 2rd0 Phosphatidylinositol kinase oncogene, with many figures from the publication rendered in Jmol.
- 2rkx Chain D, cyclase subunit of imidazoleglycerol_evolvedcerolphosphate synthase
- 2v9d A prophage protein belonging to the dihydrodipicolinic acid synthase family
- 2veo X-ray structure of Candida antarctica lipase A in its closed state
- 3ews Human DExD/H-box RNA-dependent ATPase DDX19 in the open and closed cleft conformation (includes morph).
- 3dmq Escherichia coli Swi2/Snf2 protein RapA that recycles RNA polymerase during transcription.
- 5p21 The crystal structure of the H-ras oncogene protein p21 complexed to the slowly hydrolysing GTP analogue GppNp
Topics Pages Organized by CategoryTopics Pages Organized by Category
- Biomolecules
- About Macromolecular Structure
- Nucleotides, Nucleic Acids and Genetic Information
- DNA
- RNA
- RNA
- RNA motifs
- Proteins, Three-Dimensional Structure
- Colored Proteins & those that Change Color
- DNA Binding Proteins
- Protein Function: Myoglobin and Hemoglobin, Muscle Contraction, and Antibodies
- Lipids and Biological Membranes
- Lipid Binding Proteins
- Membrane Transport Proteins
- Prions and Intrinsically Disordered Proteins
- Toxins
- Mitosis, Meiosis and Cargo Transport Proteins
- Viruses
- Suppression of RNA Silencing by Viruses
- Filamentous bacteriophage
- G3p - minor coat protein found on the surface of filamentous bacteriophage
- HIV
- Herpes Simplex Virus
- Influenza
- Colored Proteins & those that Change Color
- DNA Binding Proteins
- Evolution
- Enzymes
- Enzymatic Catalysis
- Acid-beta-glucosidase
- Acid Proteases
- Aconitase
- Cysteine Proteases
- Hen Egg-White (HEW) Lysozyme
- Choline Oxidase
- Enzyme I of the Phosphoenolpyruvate:Sugar Phosphotransferase System
- Metalloproteases
- Oxidoreductases
- Phosphofructokinase (PFK)
- Pyruvate phosphate dikinase
- Serotonin N-acetyltransferase
- Serine Hydrolases
- Serine Protease
- Triose Phosphate Isomerase
- Enzyme Inhibitors
- Enzyme Kinetics, Inhibition, and Control
- Biochemical Signaling
- Enzymes - Molecular Machines
- Enzymatic Catalysis
- Fibrous Proteins
- Gene Expression and Replication
- Nucleic Acid Structure
- DNA Replication, Repair, and Recombination
- DNA Replication,Transcription and Translation
- DNA Polymerase I
- PcrA helicase
- Fpg Nei Protein Superfamily - DNA Repair and Base Excision DNA Repair
- Human RecQ-Like protein 1 - RecQ family of DNA helicases are conserved in from bacteria to man
- Structure of E. coli DnaC helicase loader
- 1x9n#Crystal Structure of Human DNA Ligase I bound to 5.27-adenylated.2C nicked DNA
- Rop protein
- Transcription and RNA Processing
- Protein Synthesis
- Regulation of Gene Expression
- Lac repressor
- Irr (Iron Response Regulator )
- Oncogenes
- Tangible Models of Cdc42 Interacting With Intersectin
- Immune System
- Membrane Transport Proteins
- Metabolism
- Introduction to Metabolism
- Glucose Catabolism
- Glycogen Metabolism and Gluconeogenesis
- Citric Acid Cycle
- Electron Transport and Oxidative Phosphorylation
- Photosynthesis
- Lipid Metabolism
- Amino Acid Metabolism
- Mammalian Fuel Metabolism: Integration and Regulation
- Nucleotide Metabolism
- Myoglobin & Hemoglobin
- Nervous System Proteins
- Prions and Intrinsically Disordered Proteins
- Toxins