Intracellular receptors: Difference between revisions

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<scene name='51/519788/Cv/1'>RARα-RXRα interaction</scene> (PDB entry [[1dkf]]).
<scene name='51/519788/Cv/1'>RARα-RXRα interaction</scene> (PDB entry [[1dkf]]).
The Ligand binding domain for each piece of the dimer has a nearly identical structure of an <scene name='RA_Mediated_T-reg_Differentiaition/Alpha-helical_domains/2'>Tα-helical sandwich</scene>. These alpha helices form a total of 12 domains per protein (referred to as H1-12), with an additional 2 beta sheets as well. Additionally, the α-helical sandwich formed has been shown to bind All-Trans Retinoic Acid (ATRA), the isomer of RA used by the body. Both monomers contain two regions of activity, the <scene name='RA_Mediated_T-reg_Differentiaition/Dimerization_interface/3'>dimerization interface</scene> and the <scene name='RA_Mediated_T-reg_Differentiaition/Ligand_binding_pockets/1'> ligand binding pocket </scene>.
The Ligand binding domain for each piece of the dimer has a nearly identical structure of an <scene name='RA_Mediated_T-reg_Differentiaition/Alpha-helical_domains/2'>Tα-helical sandwich</scene>. These alpha helices form a total of 12 domains per protein (referred to as H1-12), with an additional 2 beta sheets as well. Additionally, the α-helical sandwich formed has been shown to bind All-Trans Retinoic Acid (ATRA), the isomer of RA used by the body. Both monomers contain two regions of activity, the <scene name='RA_Mediated_T-reg_Differentiaition/Dimerization_interface/3'>dimerization interface</scene> and the <scene name='RA_Mediated_T-reg_Differentiaition/Ligand_binding_pockets/1'> ligand binding pocket </scene>.
When RARα/RXRα proteins form a heterodimer, the overall structure of the larger dimer is comparable to that of an RXRα homodimer, likely due to the many similarities these two molecules share.  RARα and RXRα rely on residues from the H7, H8, H9, H10, L8-9, and L9-10 domains of both molecules to form the <scene name='RA_Mediated_T-reg_Differentiaition/Dimerization_interface/1'>heterodimer interface</scene>. The sequence identity between the two molecules on the dimer interface is 0.33, demonstrating that 33% of the interacting residues are homologous between the different proteins.
The residues of <scene name='RA_Mediated_T-reg_Differentiaition/Rar_dimer_interface/2'> RAR-</scene>α that are interacting in the heterodimer are as follows:
Hydrophobic residues: L356, F374, P375, L378, M379, I381 and A389 (yellow);
Negatively charged residues: D338, D349, E353, E357, D383, and E393 (red);
Positively charged residues: K360, R364, H372, K376, K380, and R385 (blue);
Hydrophilic residues: Q315, Q352, T382, and S386 (green).
The residues of <scene name='RA_Mediated_T-reg_Differentiaition/Rxr_dimer_interface/2'>RXR-</scene>α that are interacting in the heterodimer are as follows:
Hydrophobic residues: Y402, P417, F420, A421, L424, L425, L427, P428, A429, and L435 (yellow);
Negatively charged residues: E357, D384, E395, E399, E406, and E439  (red);
Positively charged residues: R353, K361, R398, K410, K422, R426, R431, and K436 (blue);
Hydrophilic residues: S432 (green).
* [[PPAR-gamma]]
* [[PPAR-gamma]]
* [[Pioglitazone]] is a selective agonist for Peroxisome Proliferator-Activated Receptor Gamma
* [[Pioglitazone]] is a selective agonist for Peroxisome Proliferator-Activated Receptor Gamma

Revision as of 14:43, 19 May 2021

Under development!!!

Signal recognition particle receptor

. Water molecules are shown as red spheres.

.

Receptor for activated C kinase 1

Nuclear receptors

The

The .

(PDB entry 1dkf).

The Ligand binding domain for each piece of the dimer has a nearly identical structure of an . These alpha helices form a total of 12 domains per protein (referred to as H1-12), with an additional 2 beta sheets as well. Additionally, the α-helical sandwich formed has been shown to bind All-Trans Retinoic Acid (ATRA), the isomer of RA used by the body. Both monomers contain two regions of activity, the and the .

When RARα/RXRα proteins form a heterodimer, the overall structure of the larger dimer is comparable to that of an RXRα homodimer, likely due to the many similarities these two molecules share. RARα and RXRα rely on residues from the H7, H8, H9, H10, L8-9, and L9-10 domains of both molecules to form the . The sequence identity between the two molecules on the dimer interface is 0.33, demonstrating that 33% of the interacting residues are homologous between the different proteins.

The residues of α that are interacting in the heterodimer are as follows:

Hydrophobic residues: L356, F374, P375, L378, M379, I381 and A389 (yellow); Negatively charged residues: D338, D349, E353, E357, D383, and E393 (red); Positively charged residues: K360, R364, H372, K376, K380, and R385 (blue); Hydrophilic residues: Q315, Q352, T382, and S386 (green).

The residues of α that are interacting in the heterodimer are as follows:

Hydrophobic residues: Y402, P417, F420, A421, L424, L425, L427, P428, A429, and L435 (yellow); Negatively charged residues: E357, D384, E395, E399, E406, and E439 (red); Positively charged residues: R353, K361, R398, K410, K422, R426, R431, and K436 (blue); Hydrophilic residues: S432 (green).

Endoplasmic reticulum/Sarcoplasmic reticulum receptors

Ligand-gated Calcium channels

Inositol 1,4,5-Trisphosphate Receptor

Ryanodine receptor

SEE ALSO:


Human androgen receptor ligand-binding domain complex with modulator (PDB code 3b5r)

Drag the structure with the mouse to rotate

ReferencesReferences

  1. Li MJ, Greenblatt HM, Dym O, Albeck S, Pais A, Gunanathan C, Milstein D, Degani H, Sussman JL. Structure of estradiol metal chelate and estrogen receptor complex: The basis for designing a new class of selective estrogen receptor modulators. J Med Chem. 2011 Apr 7. PMID:21473635 doi:10.1021/jm200192y

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Alexander Berchansky