Virus coat protein: Difference between revisions

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*Virus coat protein of parvovirus
*Virus coat protein of parvovirus


**[[2cas]] – cpvVCP - canine parvovirus<br />
**[[1s58]] - VCP – human parvovirus<br />
**[[1s58]] - VCP – human parvovirus<br />
**[[4qc8]] - VCP Vp2 – bovine parvovirus<br />
**[[4qc8]] - VCP Vp2 – bovine parvovirus<br />
**[[1k3v]] – VCP Vp2 – pig parvovirus<br />
**[[1k3v]] – VCP Vp2 – pig parvovirus<br />
**[[2cas]] – cpvVCP - canine parvovirus<br />
**[[6oas]] – cpvVCP - Cryo EM<br />
**[[1ijs]], [[1p5w]], [[1p5y]] – cpvVCP (mutant) + DNA<br />
**[[1ijs]], [[1p5w]], [[1p5y]] – cpvVCP (mutant) + DNA<br />
**[[4dpv]] - cpvVCP + DNA
**[[4dpv]] - cpvVCP + DNA
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**[[3j7l]], [[3j7m]], [[3j7n]] – bmvVCP – cryo EM<br />
**[[3j7l]], [[3j7m]], [[3j7n]] – bmvVCP – cryo EM<br />
**[[1f15]] – VCP – cucumber mosaic virus<br />
**[[1f15]] – VCP – cucumber mosaic virus<br />
**[[6mrl]] – VCP – cucumber leaf spot virus - Cryo EM<br />
**[[1auy]], [[1w39]] – VCP – turnip yellow mosaic virus<br />
**[[1auy]], [[1w39]] – VCP – turnip yellow mosaic virus<br />
**[[3zxa]] - tcvVCP – turnip crinkle virus<br />
**[[3zx8]], [[3zx9]] – tcvVCP – Cryo EM<BR />
**[[5a79]] – VCP – barley stripe mosaic virus – cryo EM<br />
**[[5a79]] – VCP – barley stripe mosaic virus – cryo EM<br />
**[[5a2t]] – VCP – bamboo mosaic virus – cryo EM<br />
**[[5a2t]] – VCP – bamboo mosaic virus – cryo EM<br />
**[[3zxa]] - tcvVCP – turnip crinkle virus<br />
**[[3zx8]], [[3zx9]] – tcvVCP – Cryo EM<BR />
**[[1f2n]] - VCP – rice yellow mosaic virus<br />
**[[1f2n]] - VCP – rice yellow mosaic virus<br />
**[[1a34]], [[2tmv]], [[1ei7]] – tmvVCP + RNA - satellite tobacco mosaic virus<br />
**[[1uf2]] – VCP + proteins – rice dwarf virus<br />
**[[3j06]] - tmvVCP + RNA – Cryo EM<BR />
**[[1a34]], [[2tmv]], [[1ei7]] – stmvVCP + RNA - satellite tobacco mosaic virus<br />
**[[2om3]], [[2xea]], [[4udv]] – tmvVCP – Cryo EM<BR />
**[[3j06]] - stmvVCP + RNA – Cryo EM<BR />
**[[3kml]] – tmvVCP (mutant) <br />
**[[2om3]], [[2xea]], [[4udv]] – stmvVCP – Cryo EM<BR />
**[[2buk]], [[1vtm]], [[4nia]], [[4oq8]], [[4oq9]] - tmvVCP - satellite tobacco necrosis virus<br />
**[[3kml]] – stmvVCP (mutant) <br />
**[[2buk]], [[1vtm]], [[4nia]], [[4oq8]], [[4oq9]] - stnvVCP - satellite tobacco necrosis virus<br />
**[[6i5a]], [[6sae]], [[6sag]] – tmvVCP - tobacco mosaic virus - Cryo EM<br />
**[[1a6c]] - VCP - tobacco ringspot virus<br />
**[[1a6c]] - VCP - tobacco ringspot virus<br />
**[[4y6t]], [[4y6x]] – VCP – tobacco streak virus<br />
**[[4y6t]], [[4y6x]] – VCP – tobacco streak virus<br />
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**[[1pgl]], [[1pgw]], [[1bmv]] – VCP + RNA – bean pod mottle virus<br />
**[[1pgl]], [[1pgw]], [[1bmv]] – VCP + RNA – bean pod mottle virus<br />
**[[2tbv]] – VCP – tomato bushy stunt virus<br />
**[[2tbv]] – VCP – tomato bushy stunt virus<br />
**[[1laj]] – VCP + RNA – tomato aspermy virus<br />
**[[1smv]] – VCP – sesbania mosaic virus<br />
**[[1smv]] – VCP – sesbania mosaic virus<br />
**[[1stm]], [[4v99]] – VCP - satellite panicum mosaic virus<br />
**[[1stm]], [[4v99]] – VCP - satellite panicum mosaic virus<br />
**[[4sbv]] – VCP – southern bean mosaic virus<br />
**[[4sbv]] – VCP – southern bean mosaic virus<br />
**[[6mrm]] – VCP - red clover necrotic mosaic virus - Cryo EM<br />
**[[6f2s]] – VCP - ageratum yellow vein virus - Cryo EM<br />
**[[6ek5]] – VCP - African cassava mosaic virus - Cryo EM<br />
**[[1m1c]] – VCP – yeast L-A virus<br />
**[[1m1c]] – VCP – yeast L-A virus<br />
**[[1laj]] – VCP + RNA – tomato aspermy virus<br />
**[[1uf2]] – VCP + proteins – rice dwarf virus<br />
**[[3iym]] – VCP – Penicillium stoloniferum virus – Cryo EM<BR />
**[[3iym]] – VCP – Penicillium stoloniferum virus – Cryo EM<BR />
**[[6hxx]] – VCP – potato virus – Cryo EM<BR />


*Virus coat protein by fiber diffraction
*Virus coat protein by fiber diffraction
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**[[1g03]] - HtlvVCP N terminal - NMR<BR />
**[[1g03]] - HtlvVCP N terminal - NMR<BR />
**[[1dzl]] – hpvVCP L1 (mutant) – Human papillomavirus<br />
**[[1dzl]] – hpvVCP L1 (mutant) – Human papillomavirus<br />
**[[2r5h]], [[2r5i]], [[2r5j]], [[2r5k]] - hpvVCP L1<br />
**[[3iyj]] - VCP L1 – bovine papillomavirus – Cryo EM<BR />
**[[3iyj]] - VCP L1 – bovine papillomavirus – Cryo EM<BR />
**[[2r5h]], [[2r5i]], [[2r5j]], [[2r5k]] - hpvVCP L1<br />
**[[1f8v]] – VCP + RNA – pariacoto virus<br />
**[[1f8v]] – VCP + RNA – pariacoto virus<br />
**[[2r18]], [[2z7j]] – VCP Vp3 – birnavirus<br />
**[[2r18]], [[2z7j]] – VCP Vp3 – birnavirus<br />
Line 209: Line 216:
**[[5tc1]] – Epms2VCP + maturation protein + phage MS2 genome – Enterobacteria phage MS2<br />
**[[5tc1]] – Epms2VCP + maturation protein + phage MS2 genome – Enterobacteria phage MS2<br />
**[[4zor]] – Epms2VCP <br />
**[[4zor]] – Epms2VCP <br />
**[[6msf]], [[7msf]] – Epms2VCP + RNA<br />
**[[5kip]] – VCP –  phage Qbeta<br />
**[[5kip]] – VCP –  phage Qbeta<br />
**[[3j9x]] – VCP – Sulfolobus iselandicus virus <br />
**[[3j9x]] – VCP – Sulfolobus iselandicus virus <br />
**[[6tuq]] – PvVCP - Peudomonas virus PF1 - Cryo EM<br />
**[[6tup]] – PvVCP + DNA - Cryo EM<br />
**[[6itb]], [[6itf]] – VCP β - flock house virus - Cryo EM<br />


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[[Category:Topic Page]]
[[Category:Topic Page]]

Revision as of 14:00, 26 March 2020


Virus coat proteins (VCP) or capsid proteins coat the virus[1]. The various VCPs are designated as Vp1, Vp2, etc. The VCP P domain (protruding domain) in noroviruses binds histo blood group antigen receptors. The outer capsid protein VP4 is a virus spike-forming protein which mediates the virial attachment to the host epithelial cell receptors. VP4 is an outer capsid protein of non-enveloped viruses. VP4 attaches to sialic acid or to integrin heterodimers[2]. VP4 domains include: VP5* which forms the foot of the spike and acts in the permeabilization of the cell membrane and VP8* which forms the head of the spike and binds to sialic acid.

The biological assembly of HIV-I coat protein is (PDB entry 3gv2).

For details on Zika virus capsid protein see Hugo Heringer de Almeida/5YGH.

For adeno-associated virus 9 Vp1 see Adeno-Associated Virus.

See also Viral capsids

Structure of HIV-I coat protein hexamer (PDB entry 3gv2)

Drag the structure with the mouse to rotate

3D structures of virus coat proteins3D structures of virus coat proteins

Updated on 26-March-2020

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Joel L. Sussman
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