Ribosome 3D structures: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older editNewer edit →
Michal Harel (talk | contribs)
31,761 edits
No edit summary
Michal Harel (talk | contribs)
31,761 edits
No edit summary
Line 5: Line 5:
*30S subunit + RNA
*30S subunit + RNA


**[[2zm6]], [[1n36]], [[1j5e]], [[3oto]] - Tt30S ribosomal subunit+THX+16S RRNA – ''Thermus thermophilus''<br />
**[[5x8r]] – s30S ribosomal subunit – spinach - Cryo-EM<br />
**[[2vqe]], [[2vqf]], [[2uuc]], 2e5l]], [[2uu9]], [[2uua]], [[2uub]]  - Tt30S ribosomal subunit+16S RRNA+RNA fragment<br />
**[[2zm6]], [[1n36]], [[1j5e]], [[3oto]], [[5wnq]], [[5wnr]], [[5wns]], [[5wnt]], [[5wnu]], [[5wnv]] - Tt30S ribosomal subunit+THX+16S rRNA – ''Thermus thermophilus''<br />
**[[4v6c]], [[1i94]], [[1fka]], [[4dr1]] -  Tt30S ribosomal subunit+16S RRNA<br />
**[[2vqe]], [[2vqf]], [[2uuc]], 2e5l]], [[2uu9]], [[2uua]], [[2uub]], [[6cao]], [[6caq]], [[6cas]]  - Tt30S ribosomal subunit+16S rRNA+RNA fragment<br />
**[[4duy]], [[4duz]], [[4dv0]], [[4dv1]], [[4dv2]], [[4dv3]], [[4dv4]], [[4dv5]], [[4dv6]], [[4dv7]] - Tt30S ribosomal subunit+16S RRNA (mutant)<br />
**[[3i1m]], [[3i1o]]
**[[4dr4]], [[4b3m]], [[4b3r]], [[4b3s]], [[4b3t]] - Tt30S ribosomal subunit+16S RRNA + mRNA<br />
[[1i94]], [[1fka]], [[4dr1]] -  Tt30S ribosomal subunit+16S rRNA<br />
**[[4duy]], [[4duz]], [[4dv0]], [[4dv1]], [[4dv2]], [[4dv3]], [[4dv4]], [[4dv5]], [[4dv6]], [[4dv7]] - Tt30S ribosomal subunit+16S rRNA (mutant)<br />
**[[4dr4]], [[4b3m]], [[4b3r]], [[4b3s]], [[4b3t]] - Tt30S ribosomal subunit+16S rRNA + mRNA<br />
**[[6nqb]], [[6enf]] – Ec30S ribosomal subunit +16S rRNA – ''Escherichia coli''<br />
**[[6spc]], [[6spg]], [[6spe]], [[6spf]], [[6spb]] – Pa30S ribosomal subunit +16S RRNA – ''Pseudomonas aeruginosa'' – Cryo EM<br />
**[[5xyu]], [[5o5j]] - Ms30S ribosomal subunit – ''Mycobacterium smegmatis'' - Cryo EM<br />
**[[5xxu]] - 30S ribosomal subunit – ''Toxoplasma gondii'' - Cryo EM<br />
 
*30S subunit +tRNA+mRNA
*30S subunit +tRNA+mRNA


**[[3t1h]], [[3t1y]] - Tt30S ribosomal subunit+16S RRNA+tRNA Lys +mRNA<br />  
**[[3t1h]], [[3t1y]] - Tt30S ribosomal subunit+16S rRNA+tRNA Lys +mRNA<br />  
**[[4v8j]] - Tt30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA<br />
**[[6dti]], [[6mkn]] - Tt30S ribosomal subunit+16S rRNA+tRNA Arg +mRNA<br />
**[[1xnq]], [[1xnr]] - Tt30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA<br />
**[[3v6u]], [[3v6v]] - Tt30S ribosomal subunit+16S rRNA+tRNA Phe+tRNA fMet+mRNA<br />
**[[4gkj]], [[4gkk]] - Tt30S ribosomal subunit +16S RRNA +THX + mRNA + tRNA Met<br />
 
**[[4jv5]], [[4jya]], [[4k0k]] - Tt30S ribosomal subunit +16S RRNA +THX + mRNA + ASL-tRNA <br />
**[[1xnq]], [[1xnr]] - Tt30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S rRNA<br />
**[[4gkj]], [[4gkk]] - Tt30S ribosomal subunit +16S rRNA +THX + mRNA + tRNA Met<br />
**[[4jv5]], [[4jya]], [[4k0k]] - Tt30S ribosomal subunit +16S rRNA +THX + mRNA + ASL-tRNA <br />


*30S subunit +A-site tRNA
*30S subunit +A-site tRNA


**[[2uxd]], [[2uxc]] -  Tt30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA<br />
**[[2uxd]], [[2uxc]] -  Tt30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S rRNA<br />
**[[1n32]], [[1n33]] - Tt30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA<br />
**[[1n32]], [[1n33]] - Tt30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S rRNA<br />
**[[1n34]] - Tt30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA<br />
**[[1n34]] - Tt30S ribosomal subunit+THX+A-site mRNA fragment +16S rRNA<br />
**[[1xmo]], 1xmq]] - Tt30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA<br />
**[[1xmo]], 1xmq]] - Tt30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S rRNA<br />
**[[2uxb]] - Tt30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA<br />
**[[2uxb]] - Tt30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S rRNA<br />


*30S subunit+P-site tRNA
*30S subunit+P-site tRNA


**[[1ibk]] - Tt30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA<br />
**[[1ibk]] - Tt30S ribosomal subunit+THX+P-site mRNA fragment +16S rRNA<br />
**[[2om7]] – TtRPS2+TtRPS12+TtRPL1+ P-site tRNA+16S RRNA fragment+23S RRNA fragment<br />
**[[2om7]] – TtRPS2+TtRPS12+TtRPL1+ P-site tRNA+16S rRNA fragment+23S RRNA fragment<br />
**[[5u4j]] – EcRPS3+EcRPS4+EcRPS5 + EcRPS12 + P-site tRNA+16S RRNA +23S RRNA + mRNA + RF-2 – Escherichia coli – Cryo EM<br />
**[[5u4j]] – EcRPS3+EcRPS4+EcRPS5 + EcRPS12 + P-site tRNA+16S rRNA +23S rRNA + mRNA + RF-2 – Cryo EM<br />
**[[5zeu]] - Ms30S ribosomal subunit + P-site tRNA f`Met +16S rRNA - Cryo EM<br />


*30S subunit+A-site tRNA+P-site tRNA
*30S subunit+A-site tRNA+P-site tRNA
   
   
**[[1ibl]], [[1ibm]] - Tt30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA<br />
**[[1ibl]], [[1ibm]] - Tt30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S rRNA<br />


*30S subunit+A-site tRNA+P-site tRNA+E-site tRNA
*30S subunit+A-site tRNA+P-site tRNA+E-site tRNA


**[[1jgo]], [[1jgp]], [[1jgq]] -  Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA<br />
**[[1jgo]], [[1jgp]], [[1jgq]] -  Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S rRNA<br />


*30S subunit + antibiotics
*30S subunit + antibiotics


**[[1i95]], [[1i97]], [[2hhh]], [[2f4v]], [[4dr3]] -  Tt30S ribosomal subunit+16S RRNA+antibiotic<br />
**[[1i95]], [[1i97]], [[2hhh]], [[2f4v]], [[4dr3]], [[6cap]], [[6car]] -  Tt30S ribosomal subunit+16S rRNA+antibiotic<br />
**[[1hnx]], [[1hnw]], [[1hnz]], [[1fjg]], [[4aqy]], [[4dr5]], [[4dr6]], [[4dr7]], [[4khp]] - Tt30S ribosomal subunit+16S RRNA+mRNA fragment+antibiotic <br />
**[[1hnx]], [[1hnw]], [[1hnz]], [[1fjg]], [[4aqy]], [[4dr5]], [[4dr6]], [[4dr7]], [[4khp]] - Tt30S ribosomal subunit+16S rRNA+mRNA fragment+antibiotic <br />
**[[4v7l]] - Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+ antibiotic<br />
**[[3knj]], [[3knh]] - Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S rRNA+ antibiotic<br />
**[[6mpf]], [[6mpi]] - Tt30S ribosomal subunit +A-site tRNA-Arg +mRNA +16S rRNA+ antibiotic<br />
 


*30S subunit + ribosome recycling factor
*30S subunit + ribosome recycling factor


**[[4v9d]] - Ec30S ribosomal subunit+16S RRNA+ribosome recycling factor + mRNA + tRNA - ''Escherichia coli'' <br />
**[[3r8n]], [[3r8o]] - Ec30S ribosomal subunit+16S rRNA+ribosome recycling factor + mRNA + tRNA <br />


*30S subunit + elongation factor
*30S subunit + elongation factor
   
   
**[[4v90]] - Tt30S ribosomal subunit+THX+RNA +16S RRNA+elongation factor G<br />
**[[4btc]] - Tt30S ribosomal subunit+THX+RNA +16S rRNA+elongation factor G<br />
**[[6enu]] - Ec30S ribosomal subunit+THX+RNA +16S rRNA+elongation factor P – Cryo EM<br />


*30S subunit + translation initiation factor
*30S subunit + translation initiation factor


**[[1hr0]] - Tt30S ribosomal subunit+THX+IF+16S RRNA<br />
**[[1hr0]] - Tt30S ribosomal subunit+THX+IF+16S rRNA<br />
**[[1i96]] -  Tt30S ribosomal subunit+THX+IF3+16S RRNA<br />
**[[1i96]] -  Tt30S ribosomal subunit+THX+IF3+16S rRNA<br />
**[[6o7k]] -  Ec30S ribosomal subunit+THX+IF1 + IF2 +16S rRNA  - tRNA + mRNA – Cryo EM<br />


*30S subunit + various proteins
*30S subunit + various proteins
   
   
**[[1x18]] – TtRPS2+TtRPS7+TtRPS11+TtRPS18+GTP-binding protein ERA+RNA fragments<br />  
**[[1x18]] – TtRPS2+TtRPS7+TtRPS11+TtRPS18+GTP-binding protein ERA+RNA fragments<br />  
**[[2ykr]] - EcRPS2 + 16S RRNA + GMPPNP + GTPase RSGA<br />
**[[6ny6]] - Tt30S ribosomal subunit + toxin YoeB<br />
**[[4a2i]] - EcRPS2 + 16S RRNA + GTPase RSGA – Cryo EM<br />
**[[2ykr]] - EcRPS2 + 16S rRNA + GMPPNP + GTPase RSGA<br />
**[[4adv]] - EcRPS2 + 16S RRNA + methyltransferase – Cryo EM<br />
**[[4a2i]] - EcRPS2 + 16S rRNA + GTPase RSGA – Cryo EM<br />
**[[5uz4]], [[5no3]], [[5no2]] - Ec30S ribosomal subunit+ BS6 + US7 + GTPase RsgA +16S RRNA – Cryo EM<br />
**[[4adv]] - EcRPS2 + 16S rRNA + methyltransferase – Cryo EM<br />
**[[6dzk]] - 30S ribosomal subunit + HPF +16S RRNA – ''Mycobacterium smegmatis'' - Cryo EM<br />
**[[5uz4]], [[5no3]], [[5no2]] - Ec30S ribosomal subunit+ BS6 + US7 + GTPase RsgA +16S rRNA – Cryo EM<br />
**[[6awb]], [[6awc]], [[6awd]] - Ec30S ribosomal subunit + RNA polymerase - Cryo EM<br />
**[[6dzk]] - Ms30S ribosomal subunit + HPF +16S rRNA - Cryo EM<br />


*40S ribosomal subunit  
*40S ribosomal subunit  


**[[6g4w]] - h40S ribosomal subunit + PNO1 + bystin + TSR1 + tRNA methyltransferase – Cryo-EM<br />
**[[6g4s]], [[6g53]], [[6g18]], [[6g51]], [[6g5i]] - h40S ribosomal subunit - Cryo-EM<br />
**[[6nd4]], [[6rbd]], [[5wlc]], [[5tzs]]- y40S ribosomal subunit – yeast - Cryo-EM<br />
 
*40S ribosomal subunit complex
 
**[[6nf8]], [[6neq]] - h40S ribosomal subunit + translation initiation factor 3 - Cryo-EM<br />
**[[5oa3]] - h40S ribosomal subunit + translation initiation factor 2D - Cryo-EM<br />
**[[6g4w]] - h40S ribosomal subunit + PNO1 + bystin + TSR1 + tRNA methyltransferase - Cryo-EM<br />
**[[6g5h]] - h40S ribosomal subunit + RACK1 - Cryo-EM<br />
**[[5vyc]] - h40S ribosomal subunit + DENR-MCT-1 - Cryo-EM<br />
**[[4kzx]] - r40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM<br />
**[[4kzx]] - r40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM<br />
**[[4kzy]] - r40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM<br />
**[[4kzy]] - r40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM<br />
**[[4kzz]] - r40S ribosomal subunit+ RACK1 + EIF1A + initiator tRNA – Cryo-EM<br />  
**[[4kzz]] - r40S ribosomal subunit+ RACK1 + EIF1A + initiator tRNA – Cryo-EM<br />  
**[[4bts]] - r40S ribosomal subunit+ 18SRRNA + EIF1 + EIF1A <br />
**[[6p4g]], [[6p4h]] - r40S ribosomal subunit + IRES virus – Cryo-EM<br />
**[[6nd4]] - y40S ribosomal subunit – yeast - Cryo-EM<br />
**[[4bts]] - r40S ribosomal subunit+ 18SrRNA + EIF1 + EIF1A <br />
**[[6fai]] - y40S ribosomal subunit + PNO1 + 20S RRNA + TSR1 + LTV1 + RIO2 – Cryo-EM<br />
**[[6fai]] - y40S ribosomal subunit + PNO1 + 20S rRNA + TSR1 + LTV1 + RIO2 - Cryo-EM<br />
**[[6eml]] - y40S ribosomal subunit + PNO1 + 20S RRNA + TSR1 + LTV1 + RIO2 + essential nuclear protein 1 – Cryo-EM<br />
**[[6eml]] - y40S ribosomal subunit + PNO1 + 20S rRNA + TSR1 + LTV1 + RIO2 + essential nuclear protein 1 – Cryo-EM<br />
**[[6rbd]] - y40S ribosomal subunit + PNO1 + 20S RRNA + TSR1 + dimethyladenosine transferase + RIO2 + essential nuclear protein 1 – Cryo-EM<br />
**[[6rbe]], [[6rbd]] - y40S ribosomal subunit + TSR1 – Cryo-EM<br />
**[[6nd4]] - y40S ribosomal subunit + SOF1 + IMP3 + MPP10 + BUD21 + NOP56 + NOP58 + NOP1 + SNU13 + RRP9 + FAF1 – Cryo-EM<br />
**[[4v5o]] - Tet40S ribosomal subunit+RACK1 – ''Tetrahymena thermophila''<br />
**[[4v5o]] - Tet40S ribosomal subunit+RACK1 – ''Tetrahymena thermophila''<br />
**[[5xyi]] - Tv40S ribosomal subunit+ RACK1 – ''Trichomonas vaginalis'' - Cryo-EM<br />
**[[5opt]] – Tc40S ribosomal subunit + KSRP – ''Trypanosoma cruzi'' - Cryo-EM<br />
**[[6okk]] – Pf40S ribosomal subunit + antibiotics – ''Plasmodium falciparum'' - Cryo-EM<br />
*48S preinitiation
**[[6fec]] – h48S - Cryo_EM<br />
**[[6gsm]], [[6gsn]] – y48S - Cryo_EM<br />
**[[6fyx]], [[6fyy]] – y48S + IF-5 - Cryo_EM<br />
*50S subunit
**[[2ftc]] – b50S subunit – bovine - Cryo_EM<br />
**[[5x8t]] – s50S ribosomal subunit - Cryo-EM<br />
**[[3kni]], [[3knk]], [[3knm]], [[3kno]], [[3v6w]], [[3v6x]], [[3zne]], [[4k0m]], [[4k0q]] -  Tt50S subunit <br />
**[[3i1n]], [[3i1p]] - Ec50S subunit<br />
**[[6gbz]], [[6gc0]], [[6gc4]], [[6gc6]], [[6gc7]], [[6gc8]], [[6ofx]] - Ec50S subunit - Cryo_EM<br />
**[[2zjq]], [[2zjr]], [[1nkw]] - Dr50S subunit – ''Deinococcus radiodurans''<br />
**[[2qa4]], [[3cc2]], [[1s72]], [[4v9f]], [[1kqs]], 1qvg, [[1jj2]], [[1ffk]], [[3cc7]], [[3cce]], [[3ccj]], [[3ccl]], [[3ccm]], [[3ccq]], [[3ccr]], [[3ccs]], [[3ccu]], [[3ccv]], [[1yj9]] - Hm50S subunit – ''Haloarcula marismortui''<br />
**[[3iy9]] – Ls50S subunit <br />
**[[3j3v]], [[3j3w]] - Bs50S subunit – ''Bacillus subtilis''<br />
**[[6ppf]], [[6pvk]] – Bs50S subunit – Cryo-EM<br />
**[[6spd]] – Pa50S subunit – Cryo-EM<br />
**[[6s12]], [[6hma]] – Sa50S subunit – ''Staphylococcus aureus'' - Cryo-EM<br />
**[[5zet]], [[6dzp]], [[5o60]], [[5xym]] – Ms50S ribosomal subunit - Cryo EM<br />


*50S subunit+RNA
*50S subunit + antibiotics


**[[2ftc]] – 50S subunit+5S RRNA+23S RRNA – bovine - Cryo_EM<br />
**[[3dll]], [[2zjp]], [[3cf5]], [[1xbp]], [[1sm1]], [[1nwx]], [[1nwy]], [[3pio]], [[3pip]] - Dr50S subunit +general stress protein Ctc+ antibiotic<br />  
**[[4v7l]], [[4v7m]], [[4v8j]], [[4v8n]], [[4v9i]] - Tt50S subunit+5S RRNA+23S RRNA <br />
**[[4v6c]] - Ec50S subunit+5S RRNA+23S RRNA <br />
**[[2zjq]], [[2zjr]], [[1nkw]] - Dr50S subunit+5S RRNA+23S RRNA – ''Deinococcus radiodurans''<br />
**[[2qa4]], [[3cc2]], [[1s72]], [[4v9f]], [[1kqs]], 1qvg, [[1jj2]], [[1ffk]]  - Hm50S subunit+5S RRNA+23S RRNA – ''Haloarcula marismortui''<br />
**[[3cc7]], [[3cce]], [[3ccj]], [[3ccl]], [[3ccm]], [[3ccq]], [[3ccr]], [[3ccs]], [[3ccu]], [[3ccv]] -  Hm50S subunit+5S RRNA+23S RRNA (mutant) <br />
**[[1yj9]] - Hm50S subunit (mutant)+5S RRNA+23S RRNA <br />
**[[1qvf]]- Hm50S subunit+5S RRNA+23S RRNA + deacylated tRNA minihelix<br />
**[[1q86]] - Hm50S subunit+5S RRNA+23S RRNA+CCA-Phe-caproic acid-biotin<br />
**[[3cma]], [[3cme]], [[1vq8]], [[1vq9]], [[1m90]] - Hm50S subunit+5S RRNA+23S RRNA+CCA+CCA-Phe-CAP-BIO<br />
**[[1vq4]], [[1vq5]], [[1vq7]], [[1vql]], [[1vqm]], [[1vqp]] – Hm50S subunit+5S RRNA+23S RRNA+transition state analog<br />
**[[1vq6]], [[1vqk]], [[1vqn]] – Hm50S subunit+5S RRNA+23S RRNA+ c-hpmn+CCA-Phe-caproic acid-biotin<br />
**[[1vqo]] – Hm50S subunit+5S RRNA+23S RRNA+ CCPMN<br />
**[[3iy9]] – 50S subunit – ''Leishmania taretolae''<br />
**[[3j3v]], [[3j3w]] - Bs50S subunit+5S RRNA+23S RRNA – ''Bacillus subtilis''<br />


*50S subunit + antibiotics
[[4io9]], [[4ioa]], [[4ioc]] - Dr50S subunit + antibiotics<br />
**[[6u48]] - Ec50S subunit + antibiotics<br />
**[[6qul]] - Ec50S subunit + P-site tRNA-fMet + antibiotics<br />
**[[6az1]], [[6az3]] – Ls50S subunit + antibiotics – Leishmania taretolae – Cryo EM<br />
**[[6s0z]], [[6ddd]], [[6ddg]] – Sa50S subunit + antibiotics – Cryo EM<br />
**[[3i55,]] [[3i56]] , [[3g4s]], [[3g4e]], [[3g71]], [[2qex]], [[3cc4]], [[3cd6]], [[1yhq]], [[1yi2]], [[1yij]], [[1yjn]], [[1yjw]], [[2otj]], [[2otl]], [[1yit]], [[1k73]], [[1kc8]], [[1k8a]], [[1k9m]], [[1kd1]], [[1m1k]], [[3cpw]], [[1yit]], [[1q7y]], [[1q81]], [[1q82]], [[1n8r]], [[1nji]], [[3cxc]] - Hm50S subunit + antibiotics<br />
**[[5v7q]] – Mt50S subunit + antibiotic – ''Mycobacterium tuberculosis'' – Cryo EM<br />


**[[3dll]], [[2zjp]], [[3cf5]], [[1xbp]], [[1sm1]], [[1nwx]], [[1nwy]], [[3pio]], [[3pip]] - Dr50S subunit+5S RRNA+23S RRNA+general stress protein Ctc+ antibiotic<br />
*50S subunit + ribosome releasing factor (RRF)
**[[4io9]], [[4ioa]], [[4ioc]] - Dr50S subunit+5S RRNA+23S RRNA+ antibiotics<br />
**[[3i55]], [[3i56]] , [[3g4s]], [[3g4e]], [[3g71]], [[2qex]], [[3cc4]], [[3cd6]], [[1yhq]], [[1yi2]], [[1yij]], [[1yjn]], [[1yjw]], [[2otj]], [[2otl]], [[1yit]], [[1k73]], [[1kc8]], [[1k8a]], [[1k9m]], [[1kd1]], [[1m1k]], [[3cpw]], [[1yit]], [[1q7y]], [[1q81]], [[1q82]], [[1n8r]], [[1nji]], [[3cxc]] - Hm50S subunit+5S RRNA+23S RRNA + antibiotics<br />


*50S subunit + ribosome releasing factor (RRF)
**[[2rdo]] - Ec50S subunit +EF-G+RRF – Cryo-EM<br />
**[[3j0d]] - Tt50S subunit+RRF – Cryo-EM<br />


**[[2rdo]] - Ec50S subunit+5S RRNA+23S RRNA+EF-G+RRF – Cryo-EM<br />
*50S subunit + various proteins
**[[3j0d]] - Tt50S subunit+5S RRNA+23S RRNA+RRF – Cryo-EM<br />


*50S subunit + various proteins
**[[2j28]] - Ec50S subunit +signal recognition particle – Cryo-EM<br />
**[[6i0y]] - Ec50S subunit + tRNA – Cryo-EM<br />
**[[6s0k]] - Ec50S subunit + tRNA + SecA + RodZ – Cryo-EM<br />
**[[5o2r]] - Ec50S subunit + antimicrobial peptide – Cryo-EM<br />
**[[5ot7]] - Ec50S subunit + EF-G – Cryo-EM<br />
**[[1w2b]] - Hm50S subunit +trigger factor N-terminal<br />
**[[1qvf]]- Hm50S subunit + deacylated tRNA minihelix<br />
**[1q86]] - Hm50S subunit +CCA-Phe-caproic acid-biotin<br />
**[[3cma]], [[3cme]], [[1vq8]], [[1vq9]], [[1m90]] - Hm50S subunit +CCA+CCA-Phe-CAP-BIO<br />
**[[1vq4]], [[1vq5]], [[1vq7]], [[1vql]], [[1vqm]], [[1vqp]] – Hm50S subunit +transition state analog<br />
**[[1vq6]], [[1vqk]], [[1vqn]] – Hm50S subunit + c-hpmn+CCA-Phe-caproic acid-biotin<br />
**[[1vqo]] – Hm50S subunt + CCPMN<br />
**[[6ppk]] - Bs50S subunit + ribosome biogenesis GTPase A – Cryo EM<br />
**[[6ha8]] - Bs50S subunit + VmlR – Cryo EM<br />
**[[6htq]] - Bs50S subunit + RelA – Cryo EM<br />
**[[6szs]] - Bs50S subunit + BrfA – Cryo EM<br />


**[[2j28]] - Ec50S subunit+5S RRNA+23S RRNA+signal recognition particle – Cryo-EM<br />
*60S subunit
**[[1w2b]] - Hm50S subunit+5S RRNA+23S RRNA+trigger factor N-terminal<br />
 
**[[6ppk]] - Bs50S subunit+5S RRNA+23S RRNA + ribosome biogenesis GTPase A – Cryo EM<br />
**[[6n8j]], [[6n8k]], [[6n8l]], [[6n8m]], [[6n8n]], [[6n8o]], [[6qik]], [[6qt0]], [[6qtz]], [[6r86]], [[6ri5]], [[6rzz]], [[6s05]] – y60S subunit - Cryo EM<br />
**[[5tzs]], [[5no4]] – y60S subunit processome – Cryo EM<br />
**[[5xxb]] – Tg60S ribosomal subunit - Cryo-EM<br />
**[[5xy3]] – Tv60S ribosomal subunit - Cryo-EM<br />
**[[5t5h]] – Tc60S ribosomal subunit - Cryo-EM<br />


*60S subunit + various proteins
*60S subunit + various proteins


**[[4v6x]] – h60S subunit + P0 + P1 + P2 – human - Cryo EM<br />
**[[3j3b]] – h60S subunit + P0 + P1 + P2 - Cryo EM<br />
**[[2lbf]] – hP1 dimerization domain + P2 dimerization domain - NMR<br />
**[[3izs]] – y60S subunit + P0 + P1 + P2 - Cryo EM<br />
**[[2w1o]] – hP2 dimerization domain - NMR<br />
**[[4beh]] – hP1 + P2 - NMR<br />
**[[4v6i]] – y60S subunit + P0 + P1 + P2 – yeast - Cryo EM<br />
**[[4v8t]] – y60S subunit + P0 + P1 + P2 + ARX1 - Cryo EM<br />
**[[4v8t]] – y60S subunit + P0 + P1 + P2 + ARX1 - Cryo EM<br />
**[[6em5]], [[6em4]], [[6em3]] – y60S ribosomal subunit + BRX1 + 5.8S RRNA + 25S RNA + CIC1 + ERB1 + HAS1 + MRT4 + NIP7 + ribosome biogenesis proteins + EIF-6 + nucleolar proteins – Cryo-EM<br />
**[[3o5h]] – y60S subunit + 5S rRNA + 5.8S rRNA + 25S rRNA + P0<br />
**[[6cb1]], [[6c0f]], [[5z3g]] – y60S ribosomal subunit + 5.8S RRNA + 25S RNA + CIC1 + HAS1 + MRT4 + NIP7 + ribosome biogenesis proteins + RNA-processing protein + nucleolar proteins + pescadillo homolog – Cryo-EM<br />
**[[6em5]], [[6em4]], [[6em3]], [[6elz]], [[6em1]] – y60S ribosomal subunit + BRX1 + 5.8S rRNA + 25S RNA + CIC1 + ERB1 + HAS1 + MRT4 + NIP7 + ribosome biogenesis proteins + EIF-6 + nucleolar proteins – Cryo-EM<br />
**[[4v7r]] – y60S subunit + 5S RRNA + 5.8S RRNA + 25S RRNA + P0<br />
**[[6cb1]], [[6c0f]], [[5z3g]] – y60S ribosomal subunit + 5.8S rRNA + 25S RNA + CIC1 + HAS1 + MRT4 + NIP7 + ribosome biogenesis proteins + RNA-processing protein + nucleolar proteins + pescadillo homolog – Cryo-EM<br />
**[[5tzs]], [[5no4]] – y60S subunit processome – Cryo EM<br />
**[[6r87]], [[6r84]] – y60S subunit + Vms1 – Cryo EM<br />
**[[5t6r]], [[5t62]] – y60S subunit + Nmd3 – Cryo EM<br />
**[[6ft6]] – y60S ribosomal subunit + NOP53 – Cryo-EM<br />
**[[5anc]], [[5anb]], [[5an9]] – sm60S subunit + P0 + SbdS + EF-Tu – slime mold - Cryo EM<br />
**[[5anc]], [[5anb]], [[5an9]] – sm60S subunit + P0 + SbdS + EF-Tu – slime mold - Cryo EM<br />
**[[6qkl]] – sm60S subunit + P0 + SbdS + EIF-6 - Cryo EM<br />
**[[6qkl]] – sm60S subunit + P0 + SbdS + EIF-6 - Cryo EM<br />
**[[4v6w]] – Dm60S subunit + P0 – Drosophila melanogaster - Cryo EM<br />
**[[3j39]] – Dm60S subunit + P0 – ''Drosophila melanogaster'' - Cryo EM<br />
**[[4v8p]] - Tet60S subunit+ 26S RRNA+ translation initiation factor 6 <br />
**[[4v8p]] - Tet60S subunit+ 26S rRNA+ translation initiation factor 6 <br />


*70S ribosome
*70S ribosome


**[[4v61]], [[5x8r]], [[5mlc]] – sRibosome – spinach - Cryo-EM<br />
**[[4v61]], [[5x8p]], [[5mlc]] – sRibosome - Cryo-EM<br />
**[[4v4i]], [[4v83]], [[4v84]], [[4v4s]], [[4v4x]], [[4v4z]], [[4v90]], [[4v42]] – TtRibosome <br />
**[[4v4q]], [[4v9d]], [[6c4i]], [[6c4h]], [[6by1]] - EcRibosome <br />
**[[4v8j]], [[4v97]] – TtRibosome ram mutation<br />
**[[5uyq]], [[5uyk]], [[5uyl]], [[5uym]], [[5uyn]], [[5uyp]], [[5uyq]], [[6o9j]], [[6o9k]], [[6ore]], [[6orl]], [[6hrm]], [[4v69]], [[4v48]], [[4v4a]], [[6bu8]] – EcRibosome - Cryo-EM<br />
**[[4v8n]] – TtRibosome agmatidine mutation<br />
**[[4v4y]], [[4v4j]] – TtRibosome Shine-Dalgarno duplex<br />
**[[4v5m]] – TtRibosome pre-translocational – Cryo-EM<br />
**[[4v5n]] – TtRibosome post-translocational – Cryo-EM<br />
**[[4v4q]], [[4v9d]] - EcRibosome <br />
**[[4v6c]], [[4v6d]], [[4v6e]] – EcRibosome ratcheting<br />
**[[4v6c]], [[4v6d]], [[4v6e]] – EcRibosome ratcheting<br />
**[[4v69]], [[4v48]], [[4v4a]] – EcRibosome – Cryo-EM<br />
**[[4v4v]] – EcRibosome pre-translocational – Cryo-EM<br />
**[[4v4v]] – EcRibosome pre-translocational – Cryo-EM<br />
**[[4v4w]] – EcRibosome SecM-stalled – Cryo-EM<br />
**[[4v4w]] – EcRibosome SecM-stalled – Cryo-EM<br />
**[[4v65]] – EcRibosome pre-accomodation – Cryo-EM<br />
**[[4v65]] – EcRibosome pre-accomodation – Cryo-EM<br />
**[[4v66]] – EcRibosome post-accomodation – Cryo-EM<br />
**[[4v66]] – EcRibosome post-accomodation – Cryo-EM<br />
**[[4v8m]] - TbRibosome – ''Trypanosoma brucei'' – Cryo-EM<br />
**[[4v4i]], [[4v83]], [[4v84]], [[4v4s]], [[4v4x]], [[4v4z]], [[4v90]], [[4v42]], [[6c5l]], [[6ucq]] – TtRibosome <br />
**[[6gzq]], [[6qnq]], [[6qnr]] – TtRibosome - Cryo-EM<br />
**[[4v8j]], [[4v97]], [[6buw]], [[6bz6]] – TtRibosome ram mutation<br />
**[[4v8n]] – TtRibosome agmatidine mutation<br />
**[[4v4y]], [[4v4j]] – TtRibosome Shine-Dalgarno duplex<br />
**[[4v5m]] – TtRibosome pre-translocational – Cryo-EM<br />
**[[4v5n]] – TtRibosome post-translocational – Cryo-EM<br />
**[[5v8i]] – TtRibosome – rps17 <br />
**[[4v8m]] - TbRibosome – ''Trypanosoma brucei'' - Cryo-EM<br />
**[[4v6u]] – Ribosome – ''Pyrococcus furiosus'' - Cryo-EM<br />
**[[4v6u]] – Ribosome – ''Pyrococcus furiosus'' - Cryo-EM<br />
**[[5zep]], [[5zeb]], [[5o61]] – MsRibosome - Cryo-EM<br />
**[[5tcu]], [[6s13]], [[5t7v]] – SaRibosome - Cryo-EM<br />
**[[6rm3]] - Ribosome – ''Valrimorpha necatrix'' - Cryo-EM<br />


*70S ribosome complex with mRNA
*70S ribosome complex with mRNA
Line 159: Line 223:
**[[4v6f]], [[4v6g]] , [[4v87]], [[4v8b]] , [[4v8d]], [[4v8e]], [[4v9i]] – TtRibosome + mRNA<br />
**[[4v6f]], [[4v6g]] , [[4v87]], [[4v8b]] , [[4v8d]], [[4v8e]], [[4v9i]] – TtRibosome + mRNA<br />
**[[4v4t]] – TtRibosome + stop codon<br />
**[[4v4t]] – TtRibosome + stop codon<br />
**[[4v4p]] – TtRibosome + THRS mRNA operator<br />
**[[4v4p]] – TtRibosome + mRNA operator<br />


*70S ribosome complex with antibiotic
*70S ribosome complex with antibiotic


**[[4v52]], [[4v53]], [[4v56]], [[4v57]], [[4v64]], [[4v4h]], [[4v7s]], [[4v7t]], [[4v7u]], [[4v7v]], [[4www]] – EcRibosome + antibiotic<br />
**[[4v52]], [[4v53]], [[4v56]], [[4v57]], [[4v64]], [[4v4h]], [[4v7s]], [[4v7t]], [[4v7u]], [[4v7v]], [[4www]] – EcRibosome + antibiotic<br />
**[[4v54]] – EcRibosome + RRF<br />
**[[6b4v]] – EcRibosome + RF-1 + antibiotic<br />
**[[4v55]], [[4v5y]] – EcRibosome + antibiotic + RRF<br />
**[[4v55]], [[4v5y]] – EcRibosome + antibiotic + RRF<br />
**[[4v51]], [[4v5c]], [[4v5d]], [[4v7w]], [[4v7x]], [[4v7y]], [[4v7z]], [[4v8a]], [[4v9c]] – TtRibosome + antibiotic<br />
**[[4v51]], [[4v5c]], [[4v5d]], [[4v7w]], [[4v7x]], [[4v7y]], [[4v7z]], [[4v8a]], [[4v9c]], [[6czr]] – TtRibosome + antibiotic<br />
**[[4v8c]], [[4v8f]], [[4v9a]], [[4v9b]], [[4v9c]] – TtRibosome + mRNA + antibiotic<br />
**[[4v8c]], [[4v8f]], [[4v9a]], [[4v9b]], [[4v9c]] – TtRibosome + mRNA + antibiotic<br />
**[[5w4k]], [[5wis]], [[5wit]], [[6nd5]], [[6nd6]], [[6o97]], [[6of1]], [[6cae]], [[5vp2]] – TtRibosome + A-site tRNA + P-site tRA + E-site tRNA + mRNA + antibiotic<br />
**[[6boh]] – TtRibosome + RF-1 + antibiotic<br />
**[[4v7l]], [[4v7m]] – Ribosome + antibiotic – ''Streptomyces puniceus''<br />
**[[4v7l]], [[4v7m]] – Ribosome + antibiotic – ''Streptomyces puniceus''<br />
**[[5v93]] – MtRibosome + antibiotic – Cryo EM<br />
**[[6ha1]] – BsRibosome + antibiotic – Cryo EM<br />
**[[6s0x]] – SaRibosome + antibiotic – Cryo EM<br />


*70S ribosome complex with release factor
*70S ribosome complex with release factor


**[[6eri]] – sRibosome + RRF + hibernation promoting factor - Cryo-EM<br />
**[[4v5a]] – TtRibosome + RRF<br />
**[[4v5a]] – TtRibosome + RRF<br />
**[[4v63]], [[4v7p]] – TtRibosome + RF-1<br />
**[[4v63]], [[4v7p]], [[6bok]] – TtRibosome + RF-1<br />
**[[4v5e]], [[4v4r]], [[4v67]], [[4v9n]] – TtRibosome + RF-2<br />
**[[4v5e]], [[4v4r]], [[4v67]], [[4v9n]] – TtRibosome + RF-2<br />
**[[4v5j]] – TtRibosome + RF-2 + substrate analog<br />
**[[4v5j]] – TtRibosome + RF-2 + substrate analog<br />
**[[4v8o]] – TtRibosome + RF-3<br />
**[[4v8o]] – TtRibosome + RF-3<br />
**[[1ml5]] – EcRibosome + RF-2 – Cryo-EM<br />
**[[4v54]] – EcRibosome + RRF<br />
**[[6dnc]], [[6osk]], [[6osq]] – EcRibosome + RF-1 – Cryo-EM<br />
**[[6ouo]], [[6og7]], [[6ogf]], [[6ogg]], [[6ogi]], [[6ot3]], [[6ost]] – EcRibosome + RF-2 – Cryo-EM<br />
**[[5u4i]], [[5u9f]], [[5u9g]] – EcRibosome + RF-2 + ArfA – Cryo-EM<br />
**[[4v89]] – EcRibosome + RF-3<br />
**[[4v89]] – EcRibosome + RF-3<br />
**[[6gxp]] – EcRibosome + RF-3 – Cryo EM<br />
**[[4v85]] – EcRibosome + RF-3 + mRNA + antibiotic<br />
**[[4v85]] – EcRibosome + RF-3 + mRNA + antibiotic<br />
**[[6gwt]], [[6gxm]], [[6gxn]], [[6gxo]] – EcRibosome + RF-1+ RF-3 + P-site tRNA – Cryo-EM<br />


*70S ribosome complex with various proteins
*70S ribosome complex with various proteins
Line 188: Line 263:
**[[4v6m]] – EcRibosome + SecYE – Cryo-EM<br />
**[[4v6m]] – EcRibosome + SecYE – Cryo-EM<br />
**[[4v4g]] – EcRibosome + protein Y – Cryo-EM<br />
**[[4v4g]] – EcRibosome + protein Y – Cryo-EM<br />
**[[5wdt]], [[5we4]] – EcRibosome + EF-Tu – Cryo-EM<br />
**[[5we6]] – EcRibosome + EF-Tu + tRNA + GTP – Cryo-EM<br />
**[[6enj]] – EcRibosome + EF-P + A-site tRNA + P-site tRNA – Cryo-EM<br />
**[[4v7i]] – EcRibosome +preprotein translocase – Cryo-EM<br />
**[[4v7i]] – EcRibosome +preprotein translocase – Cryo-EM<br />
**[[4v49]] - EcRibosome +general stress protein Ctc – Cryo-EM<br />
**[[4v49]] - EcRibosome +general stress protein Ctc – Cryo-EM<br />
Line 195: Line 273:
**[[4v5k]] – TtRibosome + colicin E3<br />
**[[4v5k]] – TtRibosome + colicin E3<br />
**[[4v7j]], [[4v7k]] – TtRibosome + toxin RelE<br />
**[[4v7j]], [[4v7k]] – TtRibosome + toxin RelE<br />
**[[6otr]], [[6oxa]], [[6oxi]] - TtRibosome + toxin YoeB<br />
**[[6cfk]] – TtRibosome + His-CAM + YfiA<br />
**[[6cfl]] – TtRibosome + Lys-CAM + YfiA<br />
**[[6fkr]] – TtRibosome + Tur1A<br />
**[[5zlu]] – TtRibosome + ABC-F – Cryo-EM<br />
**[[6dzi]] – MsRibosome + MPY – Cryo-EM<br />
*70S ribosome complex with tRNA mRNA
**[[6gsj]], [[6gsk]], [[6gsl]] – TtRibosome + A-site tRNA-Thr + mRNA + tRNA-fMet <br />
**[[6n1d]] – TtRibosome + mRNA + tRNA <br />
**[[6bz7]], [[6bz8]] – TtRibosome + A-site tRNA-Leu <br />
**[[5vpo]], [[5vpp]], [[6ndk]] – TtRibosome + tRNA-SufA6<br />
**[[6n9e]], [[6n9f]] – TtRibosome + mRNA + P-site tRNA <br />
**[[6uo1]] – TtRibosome + mRNA + A-site tRNA + P-site tRNA + E-site tRNA<br />
**[[6q95]], [[6q97]] – TtRibosome + A-site tRNA – Cryo-EM<br />
**[[6q98]] – TtRibosome + P-site tRNA – Cryo-EM<br />
**[[6q9a]] – TtRibosome + E-site tRNA – Cryo-EM<br />
**[[5uq7]] – TtRibosome + A-site tRNA + dnaX – Cryo-EM<br />
**[[5uq8]] – TtRibosome + E-site tRNA + dnaX – Cryo-EM<br />
**[[6cfj]] – TtRibosome + His-CAM + A-site tRNA + P-site tRA + E-site tRNA + mRNA + antibiotic<br />


*70S ribosome complex with elongation factor
*70S ribosome complex with elongation factor


**[[4v9o]] – EcRibosome + elongation factor G<br />
**[[4v9o]] – EcRibosome + EF-G<br />
**[[4v9p]] – EcRibosome + antibiotic + elongation factor G<br />
**[[4v9p]] – EcRibosome + antibiotic + EF-G<br />
**[[4v47]] – EcRibosome + elongation factor G – Cryo-EM<br />
**[[4v47]] – EcRibosome + elongation factor G – Cryo-EM<br />
**[[4v6t]] – EcRibosome + elongation factor G + tRNA-SmpB – Cryo-EM<br />
**[[4v6t]] – EcRibosome + EF-G + tRNA-SmpB – Cryo-EM<br />
**[[4v6k]], [[4v6l]] – EcRibosome + elongation factor Tu <br />
**[[4v6k]], [[4v6l]] – EcRibosome + EF-Tu <br />
**[[4v5l]] – EcRibosome + elongation factor Tu + tRNA<br />
**[[4v5l]] – EcRibosome + EF-Tu + tRNA<br />
**[[4v5f]], [[4v8u]], [[4v9h]] – TtRibosome + elongation factor G<br />
**[[5wfk]], [[5wf0]], [[5wfs]] – EcRibosome + EF-Tu + tRNA – Cryo EM<br />
**[[4v6a]] – TtRibosome + elongation factor P<br />
**[[4v5f]], [[4v8u]], [[4v9h]] – TtRibosome + EF-G<br />
**[[4v5g]] – TtRibosome + elongation factor Tu<br />
**[[4v56a] – TtRibosome + EF-P<br />
**[[4v8q]] – TtRibosome + antibiotic + elongation factor Tu<br />
**[[4v5g]] – TtRibosome + EF-Tu<br />
**[[4v68]] – TtRibosome + antibiotic + elongation factor Tu – Cryo-EM<br />
**[[4v8q]] – TtRibosome + antibiotic + EF-Tu<br />
**[[4v5p]], [[4v5q]], [[4v5r]], [[4v5s]] – TtRibosome + elongation factor Tu + tRNA-Trp<br />
**[[4v68]] – TtRibosome + antibiotic + EF-Tu – Cryo-EM<br />
**[[4v9j]], [[4v9k]], [[4v9l]], [[4v9m]] – TtRibosome + elongation factor G + tRNA<br />
**[[4v5p]], [[4v5q]], [[4v5r]], [[4v5s]] – TtRibosome + EF-Tu + tRNA-Trp<br />
**[[4v9l]] – TtRibosome + elongation factor G + antibiotic + tRNA<br />
**[[4v9j]], [[4v9k]], [[4v9l]], [[4v9m]] – TtRibosome + -EF-G + tRNA<br />
**[[4v9l]] – TtRibosome + EF-G + antibiotic + tRNA<br />


*80S ribosome  
*80S ribosome  


**[[4v6x]] – hRibosome - Cryo-EM<br />
**[[5t2c]], [[6ip5]], [[6ek0]], [[6qzp]] – hRibosome - Cryo-EM<br />
**[[4v5z]] -  dRibosome – Cryo-EM <br />
**[[4v5z]] -  dRibosome – dog - Cryo-EM <br />
**[[3j0l]], [[3j0o]], [[3j0p]], [[3j0q]] - rRibosome+ mRNA – Cryo-EM <br />
**[[6hcm]], [[6hcq]], [[6sgc]], [[6hcf]], [[6gz3]], [[6gz4]], [[6gz5]] – rRibosome - Cryo-EM<br />
**[[4v6w]] - DmRibosome + elongation factor 2 + guanine nucleotide-binding protein – Cryo-EM<br />
**[[4v7e]] – Ribosome – wheat - Cryo-EM<br />
**[[4v7e]] – Ribosome – wheat - Cryo-EM<br />
**[[4v7r]], [[4v88]] – yRibosome  <br />
**[[4v7r]], [[4v88]] – yRibosome  <br />
**[[4v6i]] – yRibosome - Cryo-EM<br />
**[[4v6i]], [[6t7t]], [[6t7i]], [[6t83]], [[6t4q]], [[6i7o]], [[6i7v]] – yRibosome - Cryo-EM<br />
**[[4v4b]] – yRibosome + elongation factor 2 + antifungal - Cryo-EM<br />
**[[5t2a]] – LdRibosome – ''Leishmania donovani'' - Cryo-EM<br />
 
*80S ribosome complexes
 
**[[6r6p]] – hRibosome + XBP1u - Cryo-EM<br />
**[[6olg]], [[6oli]] – hRibosome + drug - Cryo-EM<br />
**[[6olz]] – hRibosome + tRNA + drug - Cryo-EM<br />
**[[6ole]], [[6olf]], [[6om0]], [[6om7]] – hRibosome + A-site tRNA + P-site tRNA + drug - Cryo-EM<br />
**[[6fti]], [[6ftj]] -  dRibosome + oligosaccharyltransferase + Sec61 - Cryo-EM <br />
**[[6ftg]] -  dRibosome + OST - Cryo-EM <br />
**[[3j0l]], [[3j0o]], [[3j0p]], [[3j0q]] - rRibosome+ mRNA – Cryo-EM <br />
**[[6mte]], [[6mtd]] – rRibosome + EF2 + SERBP1 - Cryo-EM<br />
**[[6d9j]], [[6d90]] – rRibosome + RF-1 + P-site tRNA - Cryo-EM<br />
**[[6frk]] – rRibosome + SRP + SRP receptor - Cryo-EM<br />
**[[6hcj]] – rRibosome + A-site tRNA + P-site tRNA - Cryo-EM<br />
**[[6mtb]] – rRibosome + P-site tRNA + Z-site tRNA - Cryo-EM<br />
**[[6mtc]] – rRibosome + Z-site tRNA + IFRD2 - Cryo-EM<br />
**[[6r5q]] – rRibosome + XBP1u - Cryo-EM<br />
**[[6r6g]] – rRibosome + XBP1u + SRP - Cryo-EM<br />
**[[6r7q]] – rRibosome + XBP1u + Sec61 - Cryo-EM<br />
**[[6t59]] – rRibosome +b-tubulin- Cryo-EM<br />
**[[6p5i]], [[6p5j]], [[6p5k]], [[6p5n]], [[6ip6]], [[6ip8]] - rRibosome + IRES virus – Cryo-EM<br />
**[[4v6w]] - DmRibosome + EF2 + guanine nucleotide-binding protein – Cryo-EM<br />
**[[4v4b]] – yRibosome + EF2 + antifungal - Cryo-EM<br />
**[[6gqv]], [[6gqb]], [[6gq1]] – yRibosome + EF2 + mRNA + tRNA - Cryo-EM<br />
**[[5tga]], [[5tgm]] – yRibosome + A-site tRNA-Pro<br />
**[[5tbw]], [[5obm]], [[5on6]] – yRibosome + antibiotic <br />
**[[6hd7]] – yRibosome + NatA – Cryo EM<br />
**[[6s47]] – yRibosome + New1 – Cryo EM<br />
**[[6hhq]] – yRibosome + C45 – Cryo EM<br />
**[[6q8y]] – yRibosome + Xrn1 – Cryo EM<br />
**[[4v7h]] - TlRibosome+P-site tRNA – ''Thermomyces lanuginosus''<br />
**[[4v7h]] - TlRibosome+P-site tRNA – ''Thermomyces lanuginosus''<br />
**[[5umd]] – PfRibosome + mefloquin - Cryo-EM<br />
**[[5osg]] – LdRibosome + KSRP - Cryo-EM<br />


*Mitochondrial ribosome (mitoribosome)
*90S pre-ribosome  


**[[5aj4]] - p28S small and 39S large subunit of the mammalian mitoribosome in a 55S complex - pig<br />
**[[5jpq]], [[5oql]], [[5wyj]], [[5wyk]], [[6rxt]], [[6rxu]], [[6rxx]], [[6rxy]], [[6rxz]], [[6rxv]] – pre-Ribosome – ''Chaetomium thermophilum'' - Cryo-EM<br />
**[[4v19]], [[4v1a]]- p39S large subunit of the mammalian mitoribosome <br />
**[[5aj3]] - p28S small subunit of the mammalian mitoribosome <br />
**[[4ce4]] - p39S large subunit of the mammalian mitoribosome <br />
**[[3j6b]] - y54S large subunit of the mitoribosome <br />
**[[3jd5]] - 28S small subunit of the mammalian mitoribosome - bovine<br />


*90S pre-ribosome
*100S ribosome
 
**[[6h4n]], [[6h58]] -  EcRibosome - Cryo-EM <br />
**[[6gzx]], [[6gzz]] -  TtRibosome - Cryo-EM <br />
**[[6fxc]] -  SaRibosome - Cryo-EM <br />
 
*Mitoribosome
 
*28S subunit
 
**[[6gaz]] – p28S ribosomal subunit – pig - Cryo-EM<br />
**[[3jd5]] – b28S ribosomal subunit - Cryo-EM<br />
**[[6sg9]], [[6sga]], [[6sgb]] – Tb28S ribosomal subunit - Cryo-EM<br />
**[[6hiy]], [[6hiw]] – Tb28S ribosomal subunit+ IF-3 - Cryo-EM<br />
 
*39S subunit
 
**[[5oom]] – h39S ribosomal subunit - Cryo-EM<br />
**[[5ool]] – h39S ribosomal subunit + rRNA - Cryo-EM<br />
**[[6gb2]], [[4v19]], [[4v1a]] – p39S ribosomal subunit - Cryo-EM<br />
**[[6hix]] – Tb39S ribosomal subunit - Cryo-EM<br />
 
*55S mitoribosome


**[[5jpq]] – pre-Ribosome – ''Chaetomium thermophilum'' - Cryo-EM<br />
**[[6nu2]], [[6nu3]] – h55S subunit + RRF - Cryo EM<br />
**[[6gaw]], [[5aj4]], [[5aj3]] – p55S ribosome - Cryo-EM<br />
**[[6hiv]] – Tb55S ribosome - Cryo-EM<br />


}}
}}


[[Category:Topic Page]]
[[Category:Topic Page]]

Revision as of 12:14, 30 December 2019

Updated on 30-December-2019 For a general description of the protein see Ribosome

{{#tree:id=OrganizedByTopic|openlevels=0|

  • 30S subunit + RNA

1i94, 1fka, 4dr1 - Tt30S ribosomal subunit+16S rRNA

  • 30S subunit +tRNA+mRNA
    • 3t1h, 3t1y - Tt30S ribosomal subunit+16S rRNA+tRNA Lys +mRNA
    • 6dti, 6mkn - Tt30S ribosomal subunit+16S rRNA+tRNA Arg +mRNA
    • 3v6u, 3v6v - Tt30S ribosomal subunit+16S rRNA+tRNA Phe+tRNA fMet+mRNA
    • 1xnq, 1xnr - Tt30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S rRNA
    • 4gkj, 4gkk - Tt30S ribosomal subunit +16S rRNA +THX + mRNA + tRNA Met
    • 4jv5, 4jya, 4k0k - Tt30S ribosomal subunit +16S rRNA +THX + mRNA + ASL-tRNA
  • 30S subunit +A-site tRNA
    • 2uxd, 2uxc - Tt30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S rRNA
    • 1n32, 1n33 - Tt30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S rRNA
    • 1n34 - Tt30S ribosomal subunit+THX+A-site mRNA fragment +16S rRNA
    • 1xmo, 1xmq]] - Tt30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S rRNA
    • 2uxb - Tt30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S rRNA
  • 30S subunit+P-site tRNA
    • 1ibk - Tt30S ribosomal subunit+THX+P-site mRNA fragment +16S rRNA
    • 2om7 – TtRPS2+TtRPS12+TtRPL1+ P-site tRNA+16S rRNA fragment+23S RRNA fragment
    • 5u4j – EcRPS3+EcRPS4+EcRPS5 + EcRPS12 + P-site tRNA+16S rRNA +23S rRNA + mRNA + RF-2 – Cryo EM
    • 5zeu - Ms30S ribosomal subunit + P-site tRNA f`Met +16S rRNA - Cryo EM
  • 30S subunit+A-site tRNA+P-site tRNA
    • 1ibl, 1ibm - Tt30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S rRNA


  • 30S subunit+A-site tRNA+P-site tRNA+E-site tRNA
    • 1jgo, 1jgp, 1jgq - Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S rRNA
  • 30S subunit + antibiotics


  • 30S subunit + ribosome recycling factor
    • 3r8n, 3r8o - Ec30S ribosomal subunit+16S rRNA+ribosome recycling factor + mRNA + tRNA
  • 30S subunit + elongation factor
    • 4btc - Tt30S ribosomal subunit+THX+RNA +16S rRNA+elongation factor G
    • 6enu - Ec30S ribosomal subunit+THX+RNA +16S rRNA+elongation factor P – Cryo EM
  • 30S subunit + translation initiation factor
    • 1hr0 - Tt30S ribosomal subunit+THX+IF+16S rRNA
    • 1i96 - Tt30S ribosomal subunit+THX+IF3+16S rRNA
    • 6o7k - Ec30S ribosomal subunit+THX+IF1 + IF2 +16S rRNA - tRNA + mRNA – Cryo EM
  • 30S subunit + various proteins
    • 1x18 – TtRPS2+TtRPS7+TtRPS11+TtRPS18+GTP-binding protein ERA+RNA fragments
    • 6ny6 - Tt30S ribosomal subunit + toxin YoeB
    • 2ykr - EcRPS2 + 16S rRNA + GMPPNP + GTPase RSGA
    • 4a2i - EcRPS2 + 16S rRNA + GTPase RSGA – Cryo EM
    • 4adv - EcRPS2 + 16S rRNA + methyltransferase – Cryo EM
    • 5uz4, 5no3, 5no2 - Ec30S ribosomal subunit+ BS6 + US7 + GTPase RsgA +16S rRNA – Cryo EM
    • 6awb, 6awc, 6awd - Ec30S ribosomal subunit + RNA polymerase - Cryo EM
    • 6dzk - Ms30S ribosomal subunit + HPF +16S rRNA - Cryo EM
  • 40S ribosomal subunit
  • 40S ribosomal subunit complex
    • 6nf8, 6neq - h40S ribosomal subunit + translation initiation factor 3 - Cryo-EM
    • 5oa3 - h40S ribosomal subunit + translation initiation factor 2D - Cryo-EM
    • 6g4w - h40S ribosomal subunit + PNO1 + bystin + TSR1 + tRNA methyltransferase - Cryo-EM
    • 6g5h - h40S ribosomal subunit + RACK1 - Cryo-EM
    • 5vyc - h40S ribosomal subunit + DENR-MCT-1 - Cryo-EM
    • 4kzx - r40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM
    • 4kzy - r40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM
    • 4kzz - r40S ribosomal subunit+ RACK1 + EIF1A + initiator tRNA – Cryo-EM
    • 6p4g, 6p4h - r40S ribosomal subunit + IRES virus – Cryo-EM
    • 4bts - r40S ribosomal subunit+ 18SrRNA + EIF1 + EIF1A
    • 6fai - y40S ribosomal subunit + PNO1 + 20S rRNA + TSR1 + LTV1 + RIO2 - Cryo-EM
    • 6eml - y40S ribosomal subunit + PNO1 + 20S rRNA + TSR1 + LTV1 + RIO2 + essential nuclear protein 1 – Cryo-EM
    • 6rbe, 6rbd - y40S ribosomal subunit + TSR1 – Cryo-EM
    • 6nd4 - y40S ribosomal subunit + SOF1 + IMP3 + MPP10 + BUD21 + NOP56 + NOP58 + NOP1 + SNU13 + RRP9 + FAF1 – Cryo-EM
    • 4v5o - Tet40S ribosomal subunit+RACK1 – Tetrahymena thermophila
    • 5xyi - Tv40S ribosomal subunit+ RACK1 – Trichomonas vaginalis - Cryo-EM
    • 5opt – Tc40S ribosomal subunit + KSRP – Trypanosoma cruzi - Cryo-EM
    • 6okk – Pf40S ribosomal subunit + antibiotics – Plasmodium falciparum - Cryo-EM
  • 48S preinitiation
*50S subunit

*50S subunit + antibiotics

4io9, 4ioa, 4ioc - Dr50S subunit + antibiotics

*50S subunit + ribosome releasing factor (RRF)
    • 2rdo - Ec50S subunit +EF-G+RRF – Cryo-EM
    • 3j0d - Tt50S subunit+RRF – Cryo-EM
*50S subunit + various proteins
    • 2j28 - Ec50S subunit +signal recognition particle – Cryo-EM
    • 6i0y - Ec50S subunit + tRNA – Cryo-EM
    • 6s0k - Ec50S subunit + tRNA + SecA + RodZ – Cryo-EM
    • 5o2r - Ec50S subunit + antimicrobial peptide – Cryo-EM
    • 5ot7 - Ec50S subunit + EF-G – Cryo-EM
    • 1w2b - Hm50S subunit +trigger factor N-terminal
    • 1qvf- Hm50S subunit + deacylated tRNA minihelix
    • [1q86]] - Hm50S subunit +CCA-Phe-caproic acid-biotin
    • 3cma, 3cme, 1vq8, 1vq9, 1m90 - Hm50S subunit +CCA+CCA-Phe-CAP-BIO
    • 1vq4, 1vq5, 1vq7, 1vql, 1vqm, 1vqp – Hm50S subunit +transition state analog
    • 1vq6, 1vqk, 1vqn – Hm50S subunit + c-hpmn+CCA-Phe-caproic acid-biotin
    • 1vqo – Hm50S subunt + CCPMN
    • 6ppk - Bs50S subunit + ribosome biogenesis GTPase A – Cryo EM
    • 6ha8 - Bs50S subunit + VmlR – Cryo EM
    • 6htq - Bs50S subunit + RelA – Cryo EM
    • 6szs - Bs50S subunit + BrfA – Cryo EM
  • 60S subunit
  • 60S subunit + various proteins
    • 3j3b – h60S subunit + P0 + P1 + P2 - Cryo EM
    • 3izs – y60S subunit + P0 + P1 + P2 - Cryo EM
    • 4v8t – y60S subunit + P0 + P1 + P2 + ARX1 - Cryo EM
    • 3o5h – y60S subunit + 5S rRNA + 5.8S rRNA + 25S rRNA + P0
    • 6em5, 6em4, 6em3, 6elz, 6em1 – y60S ribosomal subunit + BRX1 + 5.8S rRNA + 25S RNA + CIC1 + ERB1 + HAS1 + MRT4 + NIP7 + ribosome biogenesis proteins + EIF-6 + nucleolar proteins – Cryo-EM
    • 6cb1, 6c0f, 5z3g – y60S ribosomal subunit + 5.8S rRNA + 25S RNA + CIC1 + HAS1 + MRT4 + NIP7 + ribosome biogenesis proteins + RNA-processing protein + nucleolar proteins + pescadillo homolog – Cryo-EM
    • 6r87, 6r84 – y60S subunit + Vms1 – Cryo EM
    • 5t6r, 5t62 – y60S subunit + Nmd3 – Cryo EM
    • 6ft6 – y60S ribosomal subunit + NOP53 – Cryo-EM
    • 5anc, 5anb, 5an9 – sm60S subunit + P0 + SbdS + EF-Tu – slime mold - Cryo EM
    • 6qkl – sm60S subunit + P0 + SbdS + EIF-6 - Cryo EM
    • 3j39 – Dm60S subunit + P0 – Drosophila melanogaster - Cryo EM
    • 4v8p - Tet60S subunit+ 26S rRNA+ translation initiation factor 6
  • 70S ribosome
  • 70S ribosome complex with mRNA
  • 70S ribosome complex with antibiotic
  • 70S ribosome complex with release factor
    • 6eri – sRibosome + RRF + hibernation promoting factor - Cryo-EM
    • 4v5a – TtRibosome + RRF
    • 4v63, 4v7p, 6bok – TtRibosome + RF-1
    • 4v5e, 4v4r, 4v67, 4v9n – TtRibosome + RF-2
    • 4v5j – TtRibosome + RF-2 + substrate analog
    • 4v8o – TtRibosome + RF-3
    • 4v54 – EcRibosome + RRF
    • 6dnc, 6osk, 6osq – EcRibosome + RF-1 – Cryo-EM
    • 6ouo, 6og7, 6ogf, 6ogg, 6ogi, 6ot3, 6ost – EcRibosome + RF-2 – Cryo-EM
    • 5u4i, 5u9f, 5u9g – EcRibosome + RF-2 + ArfA – Cryo-EM
    • 4v89 – EcRibosome + RF-3
    • 6gxp – EcRibosome + RF-3 – Cryo EM
    • 4v85 – EcRibosome + RF-3 + mRNA + antibiotic
    • 6gwt, 6gxm, 6gxn, 6gxo – EcRibosome + RF-1+ RF-3 + P-site tRNA – Cryo-EM
  • 70S ribosome complex with various proteins
    • 4v5b – EcRibosome + PDF-binding helix
    • 4v5h – EcRibosome + Tnac leader peptide
    • 4v6v - EcRibosome+ tetracycline resistance protein + mRNA + P-tRNA – Cryo-EM
    • 4v6m – EcRibosome + SecYE – Cryo-EM
    • 4v4g – EcRibosome + protein Y – Cryo-EM
    • 5wdt, 5we4 – EcRibosome + EF-Tu – Cryo-EM
    • 5we6 – EcRibosome + EF-Tu + tRNA + GTP – Cryo-EM
    • 6enj – EcRibosome + EF-P + A-site tRNA + P-site tRNA – Cryo-EM
    • 4v7i – EcRibosome +preprotein translocase – Cryo-EM
    • 4v49 - EcRibosome +general stress protein Ctc – Cryo-EM
    • 4v8g, 4v8h – TtRibosome + modulation factor
    • 4v8i - TtRibosome + ribosome-associated inhibitor
    • 4v95 – TtRibosome + YAEJ
    • 4v5k – TtRibosome + colicin E3
    • 4v7j, 4v7k – TtRibosome + toxin RelE
    • 6otr, 6oxa, 6oxi - TtRibosome + toxin YoeB
    • 6cfk – TtRibosome + His-CAM + YfiA
    • 6cfl – TtRibosome + Lys-CAM + YfiA
    • 6fkr – TtRibosome + Tur1A
    • 5zlu – TtRibosome + ABC-F – Cryo-EM
    • 6dzi – MsRibosome + MPY – Cryo-EM
  • 70S ribosome complex with tRNA mRNA
    • 6gsj, 6gsk, 6gsl – TtRibosome + A-site tRNA-Thr + mRNA + tRNA-fMet
    • 6n1d – TtRibosome + mRNA + tRNA
    • 6bz7, 6bz8 – TtRibosome + A-site tRNA-Leu
    • 5vpo, 5vpp, 6ndk – TtRibosome + tRNA-SufA6
    • 6n9e, 6n9f – TtRibosome + mRNA + P-site tRNA
    • 6uo1 – TtRibosome + mRNA + A-site tRNA + P-site tRNA + E-site tRNA
    • 6q95, 6q97 – TtRibosome + A-site tRNA – Cryo-EM
    • 6q98 – TtRibosome + P-site tRNA – Cryo-EM
    • 6q9a – TtRibosome + E-site tRNA – Cryo-EM
    • 5uq7 – TtRibosome + A-site tRNA + dnaX – Cryo-EM
    • 5uq8 – TtRibosome + E-site tRNA + dnaX – Cryo-EM
    • 6cfj – TtRibosome + His-CAM + A-site tRNA + P-site tRA + E-site tRNA + mRNA + antibiotic
  • 70S ribosome complex with elongation factor
    • 4v9o – EcRibosome + EF-G
    • 4v9p – EcRibosome + antibiotic + EF-G
    • 4v47 – EcRibosome + elongation factor G – Cryo-EM
    • 4v6t – EcRibosome + EF-G + tRNA-SmpB – Cryo-EM
    • 4v6k, 4v6l – EcRibosome + EF-Tu
    • 4v5l – EcRibosome + EF-Tu + tRNA
    • 5wfk, 5wf0, 5wfs – EcRibosome + EF-Tu + tRNA – Cryo EM
    • 4v5f, 4v8u, 4v9h – TtRibosome + EF-G
    • [[4v56a] – TtRibosome + EF-P
    • 4v5g – TtRibosome + EF-Tu
    • 4v8q – TtRibosome + antibiotic + EF-Tu
    • 4v68 – TtRibosome + antibiotic + EF-Tu – Cryo-EM
    • 4v5p, 4v5q, 4v5r, 4v5s – TtRibosome + EF-Tu + tRNA-Trp
    • 4v9j, 4v9k, 4v9l, 4v9m – TtRibosome + -EF-G + tRNA
    • 4v9l – TtRibosome + EF-G + antibiotic + tRNA
  • 80S ribosome
  • 80S ribosome complexes
    • 6r6p – hRibosome + XBP1u - Cryo-EM
    • 6olg, 6oli – hRibosome + drug - Cryo-EM
    • 6olz – hRibosome + tRNA + drug - Cryo-EM
    • 6ole, 6olf, 6om0, 6om7 – hRibosome + A-site tRNA + P-site tRNA + drug - Cryo-EM
    • 6fti, 6ftj - dRibosome + oligosaccharyltransferase + Sec61 - Cryo-EM
    • 6ftg - dRibosome + OST - Cryo-EM
    • 3j0l, 3j0o, 3j0p, 3j0q - rRibosome+ mRNA – Cryo-EM
    • 6mte, 6mtd – rRibosome + EF2 + SERBP1 - Cryo-EM
    • 6d9j, 6d90 – rRibosome + RF-1 + P-site tRNA - Cryo-EM
    • 6frk – rRibosome + SRP + SRP receptor - Cryo-EM
    • 6hcj – rRibosome + A-site tRNA + P-site tRNA - Cryo-EM
    • 6mtb – rRibosome + P-site tRNA + Z-site tRNA - Cryo-EM
    • 6mtc – rRibosome + Z-site tRNA + IFRD2 - Cryo-EM
    • 6r5q – rRibosome + XBP1u - Cryo-EM
    • 6r6g – rRibosome + XBP1u + SRP - Cryo-EM
    • 6r7q – rRibosome + XBP1u + Sec61 - Cryo-EM
    • 6t59 – rRibosome +b-tubulin- Cryo-EM
    • 6p5i, 6p5j, 6p5k, 6p5n, 6ip6, 6ip8 - rRibosome + IRES virus – Cryo-EM
    • 4v6w - DmRibosome + EF2 + guanine nucleotide-binding protein – Cryo-EM
    • 4v4b – yRibosome + EF2 + antifungal - Cryo-EM
    • 6gqv, 6gqb, 6gq1 – yRibosome + EF2 + mRNA + tRNA - Cryo-EM
    • 5tga, 5tgm – yRibosome + A-site tRNA-Pro
    • 5tbw, 5obm, 5on6 – yRibosome + antibiotic
    • 6hd7 – yRibosome + NatA – Cryo EM
    • 6s47 – yRibosome + New1 – Cryo EM
    • 6hhq – yRibosome + C45 – Cryo EM
    • 6q8y – yRibosome + Xrn1 – Cryo EM
    • 4v7h - TlRibosome+P-site tRNA – Thermomyces lanuginosus
    • 5umd – PfRibosome + mefloquin - Cryo-EM
    • 5osg – LdRibosome + KSRP - Cryo-EM
  • 90S pre-ribosome
  • 100S ribosome
  • Mitoribosome
  • 28S subunit
    • 6gaz – p28S ribosomal subunit – pig - Cryo-EM
    • 3jd5 – b28S ribosomal subunit - Cryo-EM
    • 6sg9, 6sga, 6sgb – Tb28S ribosomal subunit - Cryo-EM
    • 6hiy, 6hiw – Tb28S ribosomal subunit+ IF-3 - Cryo-EM
  • 39S subunit
    • 5oom – h39S ribosomal subunit - Cryo-EM
    • 5ool – h39S ribosomal subunit + rRNA - Cryo-EM
    • 6gb2, 4v19, 4v1a – p39S ribosomal subunit - Cryo-EM
    • 6hix – Tb39S ribosomal subunit - Cryo-EM
  • 55S mitoribosome
    • 6nu2, 6nu3 – h55S subunit + RRF - Cryo EM
    • 6gaw, 5aj4, 5aj3 – p55S ribosome - Cryo-EM
    • 6hiv – Tb55S ribosome - Cryo-EM

}}

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Jaime Prilusky, Alexander Berchansky, Wayne Decatur, Michal Harel, Joel L. Sussman
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=Ribosome_3D_structures&oldid=3135896"