4a7d: Difference between revisions
No edit summary |
No edit summary |
||
Line 3: | Line 3: | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[4a7d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4A7D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4A7D FirstGlance]. <br> | <table><tr><td colspan='2'>[[4a7d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4A7D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4A7D FirstGlance]. <br> | ||
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>< | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | ||
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1w6z|1w6z]], [[1kxx|1kxx]], [[2ybi|2ybi]], [[2ybn|2ybn]], [[4lyo|4lyo]], [[3lyo|3lyo]], [[1t6v|1t6v]], [[1kip|1kip]], [[1ic7|1ic7]], [[1vds|1vds]], [[1lzt|1lzt]], [[2xbr|2xbr]], [[1kir|1kir]], [[1lys|1lys]], [[132l|132l]], [[1e8l|1e8l]], [[1bwj|1bwj]], [[1yil|1yil]], [[1heo|1heo]], [[1sfg|1sfg]], [[1kxw|1kxw]], [[2c8o|2c8o]], [[2x0a|2x0a]], [[1yl1|1yl1]], [[1sf4|1sf4]], [[1g7l|1g7l]], [[1ior|1ior]], [[1h87|1h87]], [[1ljg|1ljg]], [[3lyt|3lyt]], [[1dpx|1dpx]], [[1iot|1iot]], [[1v7s|1v7s]], [[1ja6|1ja6]], [[1jis|1jis]], [[1ir8|1ir8]], [[2w1m|2w1m]], [[1uic|1uic]], [[1ykz|1ykz]], [[1xgq|1xgq]], [[1uie|1uie]], [[2war|2war]], [[1lji|1lji]], [[1lj3|1lj3]], [[1dpw|1dpw]], [[8lyz|8lyz]], [[2iff|2iff]], [[2lyo|2lyo]], [[1bwi|1bwi]], [[1g7h|1g7h]], [[1jj0|1jj0]], [[1lks|1lks]], [[1rfp|1rfp]], [[5lyt|5lyt]], [[1jiy|1jiy]], [[1sfb|1sfb]], [[1ir7|1ir7]], [[1iee|1iee]], [[1xei|1xei]], [[1hel|1hel]], [[1xek|1xek]], [[1at6|1at6]], [[1ljf|1ljf]], [[2ydg|2ydg]], [[1mlc|1mlc]], [[2b5z|2b5z]], [[1f10|1f10]], [[1lsz|1lsz]], [[193l|193l]], [[2ybm|2ybm]], [[1ljk|1ljk]], [[6lyt|6lyt]], [[1sq2|1sq2]], [[1zmy|1zmy]], [[2ybh|2ybh]], [[1vdq|1vdq]], [[2d91|2d91]], [[2xth|2xth]], [[1lje|1lje]], [[1b2k|1b2k]], [[1lze|1lze]], [[9lyz|9lyz]], [[2ybj|2ybj]], [[1aki|1aki]], [[1hen|1hen]], [[1uia|1uia]], [[1yik|1yik]], [[1xfp|1xfp]], [[2d6b|2d6b]], [[1lpi|1lpi]], [[1ndg|1ndg]], [[1lsd|1lsd]], [[1flw|1flw]], [[2blx|2blx]], [[6lyz|6lyz]], [[1lsg|1lsg]], [[1nbz|1nbz]], [[4lyt|4lyt]], [[3hfm|3hfm]], [[1ved|1ved]], [[1jit|1jit]], [[1lzn|1lzn]], [[1uuz|1uuz]], [[1lyz|1lyz]], [[1ja2|1ja2]], [[1wtn|1wtn]], [[2d4i|2d4i]], [[2xbs|2xbs]], [[2fbb|2fbb]], [[1fdl|1fdl]], [[2lym|2lym]], [[1lz9|1lz9]], [[1lse|1lse]], [[1lzh|1lzh]], [[1gxx|1gxx]], [[1lsm|1lsm]], [[3lym|3lym]], [[7lyz|7lyz]], [[1jj3|1jj3]], [[1yky|1yky]], [[1t3p|1t3p]], [[1heq|1heq]], [[1kiq|1kiq]], [[1kxy|1kxy]], [[2lzh|2lzh]], [[1uih|1uih]], [[2w1l|2w1l]], [[2bly|2bly]], [[1b0d|1b0d]], [[1g7j|1g7j]], [[1her|1her]], [[1bhz|1bhz]], [[1wtm|1wtm]], [[1hep|1hep]], [[1ioq|1ioq]], [[1nby|1nby]], [[1jtt|1jtt]], [[1qio|1qio]], [[1lza|1lza]], [[1xgp|1xgp]], [[1ps5|1ps5]], [[1gwd|1gwd]], [[3zvq|3zvq]], [[1v7t|1v7t]], [[1jpo|1jpo]], [[1h6m|1h6m]], [[1dqj|1dqj]], [[2a7d|2a7d]], [[1j1p|1j1p]], [[1ljj|1ljj]], [[1z55|1z55]], [[2c8p|2c8p]], [[1lsb|1lsb]], [[1f0w|1f0w]], [[2w1x|2w1x]], [[1lzg|1lzg]], [[1flq|1flq]], [[1lzc|1lzc]], [[1jj1|1jj1]], [[1rcm|1rcm]], [[2ybl|2ybl]], [[1uid|1uid]], [[1yqv|1yqv]], [[1hsx|1hsx]], [[1bgi|1bgi]], [[1lcn|1lcn]], [[1lzd|1lzd]], [[1hew|1hew]], [[2cds|2cds]], [[2vb1|2vb1]], [[2aub|2aub]], [[1hf4|1hf4]], [[1uib|1uib]], [[1ir9|1ir9]], [[2cgi|2cgi]], [[1ios|1ios]], [[1j1x|1j1x]], [[1rjc|1rjc]], [[1uc0|1uc0]], [[1azf|1azf]], [[1ic4|1ic4]], [[1ljh|1ljh]], [[4lyz|4lyz]], [[1gpq|1gpq]], [[2a6u|2a6u]], [[2d4k|2d4k]], [[1xej|1xej]], [[1ja7|1ja7]], [[1mel|1mel]], [[1ri8|1ri8]], [[1uig|1uig]], [[1bvx|1bvx]], [[1qtk|1qtk]], [[1c10|1c10]], [[1lkr|1lkr]], [[1lyo|1lyo]], [[2xjw|2xjw]], [[1hsw|1hsw]], [[1n4f|1n4f]], [[2w1y|2w1y]], [[1jto|1jto]], [[1g7m|1g7m]], [[1sf7|1sf7]], [[1lsf|1lsf]], [[1fn5|1fn5]], [[2d4j|2d4j]], [[5lyz|5lyz]], [[1c08|1c08]], [[3lzt|3lzt]], [[1ndm|1ndm]], [[1sf6|1sf6]], [[3lyz|3lyz]], [[1bvk|1bvk]], [[1uif|1uif]], [[1vau|1vau]], [[2lyz|2lyz]], [[1fly|1fly]], [[1lma|1lma]], [[1hc0|1hc0]], [[1j1o|1j1o]], [[1yl0|1yl0]], [[2lzt|2lzt]], [[1a2y|1a2y]], [[4lzt|4lzt]], [[1uco|1uco]], [[1lsy|1lsy]], [[1lsa|1lsa]], [[5lym|5lym]], [[1gxv|1gxv]], [[1p2c|1p2c]], [[1ic5|1ic5]], [[1ua6|1ua6]], [[1at5|1at5]], [[1vfb|1vfb]], [[1f3j|1f3j]], [[1vat|1vat]], [[1hem|1hem]], [[1lj4|1lj4]], [[1ja4|1ja4]], [[2a7f|2a7f]], [[4lym|4lym]], [[1flu|1flu]], [[194l|194l]], [[1lz8|1lz8]], [[1ykx|1ykx]], [[1bwh|1bwh]], [[1vdt|1vdt]], [[2hfm|2hfm]], [[1io5|1io5]], [[1lsn|1lsn]], [[1g7i|1g7i]], [[2bpu|2bpu]], [[1lzb|1lzb]], [[1lsc|1lsc]], [[1vdp|1vdp]], [[4a7e|4a7e]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1w6z|1w6z]], [[1kxx|1kxx]], [[2ybi|2ybi]], [[2ybn|2ybn]], [[4lyo|4lyo]], [[3lyo|3lyo]], [[1t6v|1t6v]], [[1kip|1kip]], [[1ic7|1ic7]], [[1vds|1vds]], [[1lzt|1lzt]], [[2xbr|2xbr]], [[1kir|1kir]], [[1lys|1lys]], [[132l|132l]], [[1e8l|1e8l]], [[1bwj|1bwj]], [[1yil|1yil]], [[1heo|1heo]], [[1sfg|1sfg]], [[1kxw|1kxw]], [[2c8o|2c8o]], [[2x0a|2x0a]], [[1yl1|1yl1]], [[1sf4|1sf4]], [[1g7l|1g7l]], [[1ior|1ior]], [[1h87|1h87]], [[1ljg|1ljg]], [[3lyt|3lyt]], [[1dpx|1dpx]], [[1iot|1iot]], [[1v7s|1v7s]], [[1ja6|1ja6]], [[1jis|1jis]], [[1ir8|1ir8]], [[2w1m|2w1m]], [[1uic|1uic]], [[1ykz|1ykz]], [[1xgq|1xgq]], [[1uie|1uie]], [[2war|2war]], [[1lji|1lji]], [[1lj3|1lj3]], [[1dpw|1dpw]], [[8lyz|8lyz]], [[2iff|2iff]], [[2lyo|2lyo]], [[1bwi|1bwi]], [[1g7h|1g7h]], [[1jj0|1jj0]], [[1lks|1lks]], [[1rfp|1rfp]], [[5lyt|5lyt]], [[1jiy|1jiy]], [[1sfb|1sfb]], [[1ir7|1ir7]], [[1iee|1iee]], [[1xei|1xei]], [[1hel|1hel]], [[1xek|1xek]], [[1at6|1at6]], [[1ljf|1ljf]], [[2ydg|2ydg]], [[1mlc|1mlc]], [[2b5z|2b5z]], [[1f10|1f10]], [[1lsz|1lsz]], [[193l|193l]], [[2ybm|2ybm]], [[1ljk|1ljk]], [[6lyt|6lyt]], [[1sq2|1sq2]], [[1zmy|1zmy]], [[2ybh|2ybh]], [[1vdq|1vdq]], [[2d91|2d91]], [[2xth|2xth]], [[1lje|1lje]], [[1b2k|1b2k]], [[1lze|1lze]], [[9lyz|9lyz]], [[2ybj|2ybj]], [[1aki|1aki]], [[1hen|1hen]], [[1uia|1uia]], [[1yik|1yik]], [[1xfp|1xfp]], [[2d6b|2d6b]], [[1lpi|1lpi]], [[1ndg|1ndg]], [[1lsd|1lsd]], [[1flw|1flw]], [[2blx|2blx]], [[6lyz|6lyz]], [[1lsg|1lsg]], [[1nbz|1nbz]], [[4lyt|4lyt]], [[3hfm|3hfm]], [[1ved|1ved]], [[1jit|1jit]], [[1lzn|1lzn]], [[1uuz|1uuz]], [[1lyz|1lyz]], [[1ja2|1ja2]], [[1wtn|1wtn]], [[2d4i|2d4i]], [[2xbs|2xbs]], [[2fbb|2fbb]], [[1fdl|1fdl]], [[2lym|2lym]], [[1lz9|1lz9]], [[1lse|1lse]], [[1lzh|1lzh]], [[1gxx|1gxx]], [[1lsm|1lsm]], [[3lym|3lym]], [[7lyz|7lyz]], [[1jj3|1jj3]], [[1yky|1yky]], [[1t3p|1t3p]], [[1heq|1heq]], [[1kiq|1kiq]], [[1kxy|1kxy]], [[2lzh|2lzh]], [[1uih|1uih]], [[2w1l|2w1l]], [[2bly|2bly]], [[1b0d|1b0d]], [[1g7j|1g7j]], [[1her|1her]], [[1bhz|1bhz]], [[1wtm|1wtm]], [[1hep|1hep]], [[1ioq|1ioq]], [[1nby|1nby]], [[1jtt|1jtt]], [[1qio|1qio]], [[1lza|1lza]], [[1xgp|1xgp]], [[1ps5|1ps5]], [[1gwd|1gwd]], [[3zvq|3zvq]], [[1v7t|1v7t]], [[1jpo|1jpo]], [[1h6m|1h6m]], [[1dqj|1dqj]], [[2a7d|2a7d]], [[1j1p|1j1p]], [[1ljj|1ljj]], [[1z55|1z55]], [[2c8p|2c8p]], [[1lsb|1lsb]], [[1f0w|1f0w]], [[2w1x|2w1x]], [[1lzg|1lzg]], [[1flq|1flq]], [[1lzc|1lzc]], [[1jj1|1jj1]], [[1rcm|1rcm]], [[2ybl|2ybl]], [[1uid|1uid]], [[1yqv|1yqv]], [[1hsx|1hsx]], [[1bgi|1bgi]], [[1lcn|1lcn]], [[1lzd|1lzd]], [[1hew|1hew]], [[2cds|2cds]], [[2vb1|2vb1]], [[2aub|2aub]], [[1hf4|1hf4]], [[1uib|1uib]], [[1ir9|1ir9]], [[2cgi|2cgi]], [[1ios|1ios]], [[1j1x|1j1x]], [[1rjc|1rjc]], [[1uc0|1uc0]], [[1azf|1azf]], [[1ic4|1ic4]], [[1ljh|1ljh]], [[4lyz|4lyz]], [[1gpq|1gpq]], [[2a6u|2a6u]], [[2d4k|2d4k]], [[1xej|1xej]], [[1ja7|1ja7]], [[1mel|1mel]], [[1ri8|1ri8]], [[1uig|1uig]], [[1bvx|1bvx]], [[1qtk|1qtk]], [[1c10|1c10]], [[1lkr|1lkr]], [[1lyo|1lyo]], [[2xjw|2xjw]], [[1hsw|1hsw]], [[1n4f|1n4f]], [[2w1y|2w1y]], [[1jto|1jto]], [[1g7m|1g7m]], [[1sf7|1sf7]], [[1lsf|1lsf]], [[1fn5|1fn5]], [[2d4j|2d4j]], [[5lyz|5lyz]], [[1c08|1c08]], [[3lzt|3lzt]], [[1ndm|1ndm]], [[1sf6|1sf6]], [[3lyz|3lyz]], [[1bvk|1bvk]], [[1uif|1uif]], [[1vau|1vau]], [[2lyz|2lyz]], [[1fly|1fly]], [[1lma|1lma]], [[1hc0|1hc0]], [[1j1o|1j1o]], [[1yl0|1yl0]], [[2lzt|2lzt]], [[1a2y|1a2y]], [[4lzt|4lzt]], [[1uco|1uco]], [[1lsy|1lsy]], [[1lsa|1lsa]], [[5lym|5lym]], [[1gxv|1gxv]], [[1p2c|1p2c]], [[1ic5|1ic5]], [[1ua6|1ua6]], [[1at5|1at5]], [[1vfb|1vfb]], [[1f3j|1f3j]], [[1vat|1vat]], [[1hem|1hem]], [[1lj4|1lj4]], [[1ja4|1ja4]], [[2a7f|2a7f]], [[4lym|4lym]], [[1flu|1flu]], [[194l|194l]], [[1lz8|1lz8]], [[1ykx|1ykx]], [[1bwh|1bwh]], [[1vdt|1vdt]], [[2hfm|2hfm]], [[1io5|1io5]], [[1lsn|1lsn]], [[1g7i|1g7i]], [[2bpu|2bpu]], [[1lzb|1lzb]], [[1lsc|1lsc]], [[1vdp|1vdp]], [[4a7e|4a7e]]</td></tr> | ||
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr> | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr> | ||
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4a7d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4a7d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4a7d RCSB], [http://www.ebi.ac.uk/pdbsum/4a7d PDBsum]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4a7d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4a7d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4a7d RCSB], [http://www.ebi.ac.uk/pdbsum/4a7d PDBsum]</span></td></tr> | ||
<table> | </table> | ||
== Function == | |||
[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref> | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
Line 25: | Line 27: | ||
[[Category: Gallus gallus]] | [[Category: Gallus gallus]] | ||
[[Category: Lysozyme]] | [[Category: Lysozyme]] | ||
[[Category: Burkhardt, A | [[Category: Burkhardt, A]] | ||
[[Category: Hohenberg, H | [[Category: Hohenberg, H]] | ||
[[Category: Meents, A | [[Category: Meents, A]] | ||
[[Category: Panneerselvam, S | [[Category: Panneerselvam, S]] | ||
[[Category: Reimer, R | [[Category: Reimer, R]] | ||
[[Category: Wagner, A | [[Category: Wagner, A]] | ||
[[Category: Warmer, M | [[Category: Warmer, M]] | ||
[[Category: High-pressure cooling]] | [[Category: High-pressure cooling]] | ||
[[Category: High-pressure protein crystallography]] | [[Category: High-pressure protein crystallography]] | ||
[[Category: Hydrolase]] | [[Category: Hydrolase]] |
Revision as of 10:00, 25 December 2014
X-ray crystal structure of HEWL flash-cooled at high pressureX-ray crystal structure of HEWL flash-cooled at high pressure
Structural highlightsFunction[LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.[1] Publication Abstract from PubMedHigh-pressure freezing (HPF) is a method which allows sample vitrification without cryoprotectants. In the present work, protein crystals were cooled to cryogenic temperatures at a pressure of 210 MPa. In contrast to other HPF methods published to date in the field of cryocrystallography, this protocol involves rapid sample cooling using a standard HPF device. The fast cooling rates allow HPF of protein crystals directly in their mother liquor without the need for cryoprotectants or external reagents. HPF was first attempted with hen egg-white lysozyme and cubic insulin crystals, yielding good to excellent diffraction quality. Non-cryoprotected crystals of the membrane protein photosystem II have been successfully cryocooled for the first time. This indicates that the presented HPF method is well suited to the vitrification of challenging systems with large unit cells and weak crystal contacts. Fast high-pressure freezing of protein crystals in their mother liquor.,Burkhardt A, Warmer M, Panneerselvam S, Wagner A, Zouni A, Glockner C, Reimer R, Hohenberg H, Meents A Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Apr 1;68(Pt 4):495-500., Epub 2012 Mar 31. PMID:22505429[2] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
|
|