Chemotaxis protein: Difference between revisions

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Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
{{#tree:id=OrganizedByTopic|openlevels=0|


===CheY===
*CheY
[[1ab6]], [[1d4z]], [[1e6m]], [[1e6k]], [[1e6l]], [[1jbe]], [[1mih]], [[3oo0]], [[3oo1]] – EcCheY (mutant) – ''Escherichia coli''<BR />
[[1tmy]], [[2tmy]], [[3tmy]], [[4tmy]] - TmCheY – ''Thermotoga maritima''<br />
[[4h60]], [[4hnr]] – VcCheY – ''Vibrio cholerae''<br />
[[4hnq]] - VcCheY (mutant) <br />
[[3gwg]] – HpCheY -  ''Helicobacter pylori''<BR />
[[3h1f]], [[3h1g]] - HpCheY (mutant) <BR />
[[2id7]], [[2id9]], [[2idm]] – EcCheY-phosphono (mutant) <BR />
[[1djm]] – EcCheY – NMR<BR />
[[2chy]] – StCheY - ''Salmonella typhimurium'' <br />


''CheY complexes''
**[[1ab6]], [[1d4z]], [[1e6m]], [[1e6k]], [[1e6l]], [[1jbe]], [[1mih]], [[3oo0]], [[3oo1]] – EcCheY (mutant) – ''Escherichia coli''<BR />
**[[1tmy]], [[2tmy]], [[3tmy]], [[4tmy]] - TmCheY – ''Thermotoga maritima''<br />
**[[4h60]], [[4hnr]] – VcCheY – ''Vibrio cholerae''<br />
**[[4hnq]] - VcCheY (mutant) <br />
**[[3gwg]] – HpCheY -  ''Helicobacter pylori''<BR />
**[[3h1f]], [[3h1g]] - HpCheY (mutant) <BR />
**[[2id7]], [[2id9]], [[2idm]] – EcCheY-phosphono (mutant) <BR />
**[[1djm]] – EcCheY – NMR<BR />
**[[2chy]] – StCheY - ''Salmonella typhimurium'' <br />


[[1zdm]] – EcCheY + Xe<BR />
*''CheY complexes''
[[3h1e]] - HpCheY  + BeF3 + Mn<BR />
[[3f7n]], [[3fft]], [[3ffw]], [[3ffx]], [[3fgz]], [[3myy]], [[3olv]], [[3olw]], [[3olx]], [[3oly]] - EcCheY (mutant) + BeF3 + Mn<BR />
[[4hns]] - VcCheY + BeF3 + Mg<br />
[[4lx8]] - VcCheY + Mg<br />
[[1fqw]] - EcCheY  + BeF3 + Mn<br />
[[3rvj]], [[3rvk]], [[3rvl]], [[3rvm]], [[3rvn]], [[3rvo]], [[3rvp]], [[3rvq]], [[3rvr]], [[3rvs]] - EcCheY (mutant) + BeF3 + Mn<br />
[[1bdj]] – EcCheY + aerobic respiration control protein HPT domain<BR />
[[1u8t]] – EcCheY + flagellar motor switch protein FLIM<BR />
[[2b1j]], [[1f4v]] - EcCheY + flagellar motor switch protein FLIM N terminal<br />
[[1ffg]], [[1ffs]] – EcCheY + CheA CheY-binding domain<BR />
[[1u0s]] - TmCheY response regulating domain + CheA P2 domain <BR />
[[1ffw]] – EcCheY + CheA CheY-binding domain + imido phosphate<BR />
[[1kmi]] - EcCheY + CheZ<BR />
[[2lp4]] - EcCheY + CheA<br />
[[2fka]], [[2flk]], [[2flw]], [[2fmf]], [[2fmh]], [[2fmi]], [[2fmk]], [[2pl9]], [[2pmc]] – StCheY + CheZ  peptide <BR />
[[2che]], [[2chf]] – StCheY + Mg<br />
[[4iga]] - TmCheY + flagellar motor switch protein FLIM peptide<br />


===CheX===
**[[1zdm]] – EcCheY + Xe<BR />
**[[3h1e]] - HpCheY  + BeF3 + Mn<BR />
**[[3f7n]], [[3fft]], [[3ffw]], [[3ffx]], [[3fgz]], [[3myy]], [[3olv]], [[3olw]], [[3olx]], [[3oly]] - EcCheY (mutant) + BeF3 + Mn<BR />
**[[4hns]] - VcCheY + BeF3 + Mg<br />
**[[4lx8]] - VcCheY + Mg<br />
**[[1fqw]] - EcCheY  + BeF3 + Mn<br />
**[[3rvj]], [[3rvk]], [[3rvl]], [[3rvm]], [[3rvn]], [[3rvo]], [[3rvp]], [[3rvq]], [[3rvr]], [[3rvs]] - EcCheY (mutant) + BeF3 + Mn<br />
**[[1bdj]] – EcCheY + aerobic respiration control protein HPT domain<BR />
**[[1u8t]] – EcCheY + flagellar motor switch protein FLIM<BR />
**[[2b1j]], [[1f4v]] - EcCheY + flagellar motor switch protein FLIM N terminal<br />
**[[1ffg]], [[1ffs]] – EcCheY + CheA CheY-binding domain<BR />
**[[1u0s]] - TmCheY response regulating domain + CheA P2 domain <BR />
**[[1ffw]] – EcCheY + CheA CheY-binding domain + imido phosphate<BR />
**[[1kmi]] - EcCheY + CheZ<BR />
**[[2lp4]] - EcCheY + CheA<br />
**[[2fka]], [[2flk]], [[2flw]], [[2fmf]], [[2fmh]], [[2fmi]], [[2fmk]], [[2pl9]], [[2pmc]] – StCheY + CheZ  peptide <BR />
**[[2che]], [[2chf]] – StCheY + Mg<br />
**[[4iga]] - TmCheY + flagellar motor switch protein FLIM peptide<br />


[[1xko]]– TmCheX<BR />
*CheX
[[3hm4]] – CheX – ''Desulfovibrio desulfuricans''<BR />
[[3hzh]] – CheX + Che-3 – ''Borrelia burgdorferi''<br />


===CheC===
**[[1xko]]– TmCheX<BR />
**[[3hm4]] – CheX – ''Desulfovibrio desulfuricans''<BR />
**[[3hzh]] – CheX + Che-3 – ''Borrelia burgdorferi''<br />


[[1xkr]] – TmCheC<BR />
*CheC
[[2f9z]] – TmCheC + CheD<BR />
[[3qta]] – CheC – ''Haloarcula marismortui''<BR />


===CheR===
**[[1xkr]] – TmCheC<BR />
**[[2f9z]] – TmCheC + CheD<BR />
**[[3qta]] – CheC – ''Haloarcula marismortui''<BR />


[[1bc5]] – StCheR + chemotaxis receptor peptide <BR />
*CheR
[[1af7]] – StCheR<br />


===CheA===
**[[1bc5]] – StCheR + chemotaxis receptor peptide <BR />
**[[1af7]] – StCheR<br />


[[1fwp]] – EcCheA – NMR<br />
*CheA
[[1b3q]] – TmCheA dimerization, kinase and regulatory domains <BR />
[[1i5n]] – StCheA P1 domain<br />
[[1i58]], [[1i59]], [[1i5a]], [[1i5b]], [[1i5d]] - TmCheA P4 domain + ATP analog<br />
[[1i5c]] - TmCheA P4 domain (mutant) + ADP<br />
[[1tqg]] – TmCheA phosphotransferase domain<br />
[[2ld6]] – TmCheA HPT domain - NMR<BR />
[[2ch4]] - TmCheA kinase and regulatory domains + CheW<br />
[[3ur1]], [[4jpb]] – TmCheA + CheW + methyl-accepting Che<br />


===CheB===
**[[1fwp]] – EcCheA – NMR<br />
**[[1b3q]] – TmCheA dimerization, kinase and regulatory domains <BR />
**[[1i5n]] – StCheA P1 domain<br />
**[[1i58]], [[1i59]], [[1i5a]], [[1i5b]], [[1i5d]] - TmCheA P4 domain + ATP analog<br />
**[[1i5c]] - TmCheA P4 domain (mutant) + ADP<br />
**[[1tqg]] – TmCheA phosphotransferase domain<br />
**[[2ld6]] – TmCheA HPT domain - NMR<BR />
**[[2ch4]] - TmCheA kinase and regulatory domains + CheW<br />
**[[3ur1]], [[4jpb]] – TmCheA + CheW + methyl-accepting Che<br />


[[1a2o]], [[1chd]]– StCheB<br />
*CheB


===CheW===
**[[1a2o]], [[1chd]]– StCheB<br />


[[1k0s]] – TmCheW<br />
*CheW
[[2ho9]] – EcCheW - NMR<BR />


===Aspartate chemotaxis receptor===
**[[1k0s]] – TmCheW<br />
**[[2ho9]] – EcCheW - NMR<BR />


[[1jmw]], [[1vls]] – StChe LBD<br />
*Aspartate chemotaxis receptor
[[1lih]] – StChe LBD (mutant)<br />
[[1was]] – StChe LBD<br />
[[1wat]], [[1vlt]], [[2lig]] – StChe LBD + aspartate<br />
[[2asr]] – EcChe <br />


===Methyl-accepting chemotaxis protein===
**[[1jmw]], [[1vls]] – StChe LBD<br />
**[[1lih]] – StChe LBD (mutant)<br />
**[[1was]] – StChe LBD<br />
**[[1wat]], [[1vlt]], [[2lig]] – StChe LBD + aspartate<br />
**[[2asr]] – EcChe <br />


[[2m7u]], [[2m7v]] – TeMche – ''Thermosynechococcus elongatus''<br />
*Methyl-accepting chemotaxis protein
[[3vv4]] – TeMche GAF domain<br />
[[4fof]], [[4glq]] – TeMche GAF domain (mutant)<br />
[[3w2z]] – Mche residues 221-397 – Nostoc<br />
[[3g67]] – TmMche<BR />
[[3g6b]] – TmMche (mutant) <BR />
[[2ch7]] – TmMche cytoplasmic domain<BR />
[[1qu7]] – EcMcheI cytoplasmic domain<BR />
[[2ld6]] – EcMche peptide - NMR<BR />
[[3atp]] -  EcMcheI LBD + serine<BR />
[[2d4u]] – EcMcheI LBD (mutant)<br />
[[3zx6]] – EcMcheI/HAMP<br />
[[1jmw]] - StMche LBD (mutant) <BR />
[[2qhk]], [[4exo]] – Mche N-terminal – ''Vibrio parahaemolyticus''<BR />
[[3c8c]] – Mche N-terminal <BR />
[[3b47]] – Mche periplasmic domain – ''Geobacter sulfurreducens''<BR />
[[4it2]] - Mche H-Nox domain Mn-porphyrin – ''Caldanaerobacter subterraneus''<br />


''Heme-containing methyl-accepting chemotaxis protein''
**[[2m7u]], [[2m7v]] – TeMche – ''Thermosynechococcus elongatus''<br />
**[[3vv4]] – TeMche GAF domain<br />
**[[4fof]], [[4glq]] – TeMche GAF domain (mutant)<br />
**[[3w2z]] – Mche residues 221-397 – Nostoc<br />
**[[3g67]] – TmMche<BR />
**[[3g6b]] – TmMche (mutant) <BR />
**[[2ch7]] – TmMche cytoplasmic domain<BR />
**[[1qu7]] – EcMcheI cytoplasmic domain<BR />
**[[2ld6]] – EcMche peptide - NMR<BR />
**[[3atp]] -  EcMcheI LBD + serine<BR />
**[[2d4u]] – EcMcheI LBD (mutant)<br />
**[[3zx6]] – EcMcheI/HAMP<br />
**[[1jmw]] - StMche LBD (mutant) <BR />
**[[2qhk]], [[4exo]] – Mche N-terminal – ''Vibrio parahaemolyticus''<BR />
**[[3c8c]] – Mche N-terminal <BR />
**[[3b47]] – Mche periplasmic domain – ''Geobacter sulfurreducens''<BR />
**[[4it2]] - Mche H-Nox domain Mn-porphyrin – ''Caldanaerobacter subterraneus''<br />


[[3eee]], [[3iqb]], [[3lah]], [[3lai]], [[3sj5]], [[4fdk]] – TtMche H-Nox domain (mutant)<br />
*''Heme-containing methyl-accepting chemotaxis protein''
[[1xbn]] – TtMche – Thermoanaerobacter tengcongensis<br />
[[1u4h]], [[1u55]], [[1u56]], [[3tf0]], [[3tf1]] - TtMche H-Nox domain<br />
[[3m0b]] - TtMche H-Nox domain Ru-porphyrin<br />
[[3nvr]], [[3nvu]] – TtMche N terminal (mutant)<br />


===Flagellar motor protein FLIN===
**[[3eee]], [[3iqb]], [[3lah]], [[3lai]], [[3sj5]], [[4fdk]] – TtMche H-Nox domain (mutant)<br />
**[[1xbn]] – TtMche – Thermoanaerobacter tengcongensis<br />
**[[1u4h]], [[1u55]], [[1u56]], [[3tf0]], [[3tf1]] - TtMche H-Nox domain<br />
**[[3m0b]] - TtMche H-Nox domain Ru-porphyrin<br />
**[[3nvr]], [[3nvu]] – TtMche N terminal (mutant)<br />


[[1yab]] – TmFLIN<BR />
*Flagellar motor protein FLIN


===Chemotaxis protein MotB===
**[[1yab]] – TmFLIN<BR />


[[3cyp]], [[3imp]], [[3s02]], [[3s03]], [[3s06]], [[3s0h]], [[3s0w]], [[3s0y]] – HpMotB C terminal<br />  
*Chemotaxis protein MotB
[[3cyq]] – HpMotB C terminal + N-acetylmuramic acid<BR />
 
[[2zov]], [[2zvy]], [[2zvz]] - StMotB C terminal<br />
**[[3cyp]], [[3imp]], [[3s02]], [[3s03]], [[3s06]], [[3s0h]], [[3s0w]], [[3s0y]] – HpMotB C terminal<br />  
**[[3cyq]] – HpMotB C terminal + N-acetylmuramic acid<BR />
**[[2zov]], [[2zvy]], [[2zvz]] - StMotB C terminal<br />
}}
[[Category:Topic Page]]
[[Category:Topic Page]]

Revision as of 12:41, 20 November 2014

Template:STRUCTURE 1e6m

Chemotaxis proteins direct cell movement according to certain chemicals in their environment. For details on chemotaxis protein see

3D structures of chemotaxis protein3D structures of chemotaxis protein

Updated on 20-November-2014

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Lynmarie K Thompson, Joel L. Sussman
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