Transcription initiation factor: Difference between revisions

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<StructureSection load='1vol' size='400' side='right' caption='Structure of human TFIIB (grey) complex with TATA-binding protein (green) and DNA (PDB entry [[1vol]])' scene=''>
<StructureSection load='1vol' size='400' side='right' caption='Structure of human TFIIB (grey) complex with TATA-binding protein (green) and DNA (PDB entry [[1vol]])' scene=''>


'''Transcription initiation factors''' (TFII) are proteins which enable RNA polymerase II to bind to the DNA template in order to start the transcription process. '''TFIID''' recognizes the promoter sequence on the DNA while TFIIB bridges between TFIID and RNA polymerase II. '''TFIIA''' is one of several TFs which are required for transcription.  '''TFIIA''' aids in binding the TATA-binding protein (TBP) to the TATA box containing sequence of the DNA. '''TFIIF''' binds RNA polymerase III prohibiting it to bind to DNA outside the promoter.
'''Transcription initiation factors''' (TFII) are proteins which enable RNA polymerase II to bind to the DNA template in order to start the transcription process.<br />
* '''TFIIA''' is one of several TFs which are required for transcription.  TFIIA aids in binding the TATA-binding protein (TBP) to the TATA box containing sequence of the DNA.<br />
*  '''TFIIB''' bridges between TFIID and RNA polymerase II.<br />
*  '''TFIID''' recognizes the promoter sequence on the DNA.<br />
'''TFIIF''' binds RNA polymerase III prohibiting it to bind to DNA outside the promoter.


==3D structures of transcription initiation factors==
==3D structures of transcription initiation factors==

Revision as of 09:47, 21 August 2014


Transcription initiation factors (TFII) are proteins which enable RNA polymerase II to bind to the DNA template in order to start the transcription process.

  • TFIIA is one of several TFs which are required for transcription. TFIIA aids in binding the TATA-binding protein (TBP) to the TATA box containing sequence of the DNA.
  • TFIIB bridges between TFIID and RNA polymerase II.
  • TFIID recognizes the promoter sequence on the DNA.
  • TFIIF binds RNA polymerase III prohibiting it to bind to DNA outside the promoter.

3D structures of transcription initiation factors

Updated on 05-May-2025

TFIIA

1ytf, 1nh2, 1rm1 – yTFIIA + TBP + DNA – yeast

1nvp – hTFIIA + TATA-binding protein + DNA – human

TFIIB

1pft – TFIIB N terminal – Pyrococcus furiosus – NMR

1tfb – hTFIIB - NMR
1dl6 - hTFIIB N terminal – NMR
1rly - hTFIIB Zn ribbon domain + Zn – NMR
1ro4 - hTFIIB Zn ribbon domain – NMR
1vol, 1c9b – hTFIIB + TBP + DNA
3k1f, 3k7a, 4bbr, 4bbs – yTFIIB + RNA polymerase II
1ais, 1d3u - TFIIB C terminal + TBP + DNA – Pyrococcus woesei

TFIID

1bh8 – hTFIID

1eqf – hTFIID subunit 1
3uv5, 3uv4 – hTFIID subunit 1 bromodomain
3aad – hTFIID subunit 1 bromodomain + histone chaperone ASF1A
1tba – TFIID – Drosophila melanogaster - NMR
1bh9 – hTFIID + PCMBS
1qn3, 1qn4, 1qn5, 1qn6, 1qn7, 1qn8, 1qn9, 1qna, 1qnb, 1qnc, 1qne – TFIID + DNA – Arabidopsis thaliana

TFIIE

1vd4 - hTFIIB Zn finger domain – NMR

2rnq – hTFIIE C terminal - NMR
2rnr – hTFIIE C terminal + TFIIH PH domain- NMR

TFIIF

1f3u – hTFIIF

1nha – hTFIIF C terminal - NMR
1i27 – hTFIIF C terminal (mutant)
1j2x – hTFIIF C terminal + RNA polymerase CTD phosphatase peptide
1onv – hTFIIF C terminal + serine phosphatase peptide - NMR
2k7l – hTFIIF C terminal + FCP1 peptide - NMR








Structure of human TFIIB (grey) complex with TATA-binding protein (green) and DNA (PDB entry 1vol)

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Joel L. Sussman