Sandbox 5 Eric Martz: Difference between revisions
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This page is reserved for Eric Martz and Eran Hodis, for development of a color key below Jmol. | This page is reserved for Eric Martz and Eran Hodis, for development of a color key below Jmol. | ||
</div> | </div> | ||
{{Structure | |||
|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1h6m]], [[Resolution | resolution]] 1.64Å (<scene name='initialview01'>default scene</scene>)}}} | |||
|SITE= <scene name='pdbsite=AC1:Binding+Site+For+Residue+G2f+A+1131'>AC1</scene>, <scene name='pdbsite=AC2:Binding+Site+For+Residue+Nag+A+1132'>AC2</scene> and <scene name='pdbsite=AC3:Binding+Site+For+Residue+Na+A+1130'>AC3</scene> | |||
|LIGAND= <scene name='pdbligand=NA:SODIUM+ION'>NA</scene> | |||
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span> | |||
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00119 LYZ1]</span> | |||
|RELATEDENTRY=[[132l|132l]], [[193l|193l]], [[194l|194l]], [[1a2y|1a2y]], [[1aki|1aki]], [[1at5|1at5]], [[1at6|1at6]], [[1azf|1azf]], [[1b0d|1b0d]], [[1b2k|1b2k]], [[1bgi|1bgi]], [[1bhz|1bhz]], [[1bvk|1bvk]], [[1bvx|1bvx]], [[1bwh|1bwh]], [[1bwi|1bwi]], [[1bwj|1bwj]], [[1c08|1c08]], [[1c10|1c10]], [[1dpw|1dpw]], [[1dpx|1dpx]], [[1dqj|1dqj]], [[1e8l|1e8l]], [[1f0w|1f0w]], [[1f10|1f10]], [[1f3j|1f3j]], [[1fdl|1fdl]], [[1flq|1flq]], [[1flu|1flu]], [[1flw|1flw]], [[1fly|1fly]], [[1fn5|1fn5]], [[1g7h|1g7h]], [[1g7i|1g7i]], [[1g7j|1g7j]], [[1g7l|1g7l]], [[1g7m|1g7m]], [[1h87|1h87]], [[1hc0|1hc0]], [[1hel|1hel]], [[1hem|1hem]], [[1hen|1hen]], [[1heo|1heo]], [[1hep|1hep]], [[1heq|1heq]], [[1her|1her]], [[1hew|1hew]], [[1hf4|1hf4]], [[1hsw|1hsw]], [[1hsx|1hsx]], [[1io5|1io5]], [[1ioq|1ioq]], [[1ior|1ior]], [[1ios|1ios]], [[1iot|1iot]], [[1jpo|1jpo]], [[1kip|1kip]], [[1kiq|1kiq]], [[1kir|1kir]], [[1kxw|1kxw]], [[1kxx|1kxx]], [[1kxy|1kxy]], [[1lcn|1lcn]], [[1lkr|1lkr]], [[1lks|1lks]], [[1lma|1lma]], [[1lpi|1lpi]], [[1lsa|1lsa]], [[1lsb|1lsb]], [[1lsc|1lsc]], [[1lsd|1lsd]], [[1lse|1lse]], [[1lsf|1lsf]], [[1lsg|1lsg]], [[1lsm|1lsm]], [[1lsn|1lsn]], [[1lsy|1lsy]], [[1lsz|1lsz]], [[1lyo|1lyo]], [[1lys|1lys]], [[1lyz|1lyz]], [[1lz8|1lz8]], [[1lz9|1lz9]], [[1lza|1lza]], [[1lzb|1lzb]], [[1lzc|1lzc]], [[1lzd|1lzd]], [[1lze|1lze]], [[1lzg|1lzg]], [[1lzh|1lzh]], [[1lzn|1lzn]], [[1lzt|1lzt]], [[1mel|1mel]], [[1mlc|1mlc]], [[1qio|1qio]], [[1qtk|1qtk]], [[1rcm|1rcm]], [[1rfp|1rfp]], [[1uco|1uco]], [[1uia|1uia]], [[1uib|1uib]], [[1uic|1uic]], [[1uid|1uid]], [[1uie|1uie]], [[1uif|1uif]], [[1uig|1uig]], [[1uih|1uih]], [[1xei|1xei]], [[1xej|1xej]], [[1xek|1xek]], [[2hfm|2hfm]], [[2iff|2iff]], [[2lym|2lym]], [[2lyo|2lyo]], [[2lyz|2lyz]], [[2lzh|2lzh]], [[2lzt|2lzt]], [[3hfl|3hfl]], [[3hfm|3hfm]], [[3lym|3lym]], [[3lyo|3lyo]], [[3lyt|3lyt]], [[3lyz|3lyz]], [[3lzt|3lzt]], [[4lym|4lym]], [[4lyo|4lyo]], [[4lyt|4lyt]], [[4lyz|4lyz]], [[4lzt|4lzt]], [[5lym|5lym]], [[5lyt|5lyt]], [[5lyz|5lyz]], [[6lyt|6lyt]], [[6lyz|6lyz]], [[7lyz|7lyz]], [[8lyz|8lyz]] | |||
|NONSTDRES=<scene name='pdbligand=G2F:2-DEOXY-2FLUORO-GLUCOSE'>G2F</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene> | |||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1h6m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1h6m OCA], [http://www.ebi.ac.uk/pdbsum/1h6m PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1h6m RCSB]</span> | |||
|FUNCTION={{GO|id=GO:0003796 | text = lysozyme activity}}{{GO|id=GO:0016798 | text = hydrolase activity, acting on glycosyl bonds}}{{GO|id=GO:0003824 | text = catalytic activity}}{{GO|id=GO:0016787 | text = hydrolase activity}} | |||
|PROCESS={{GO|id=GO:0019835 | text = cytolysis}}{{GO|id=GO:0016998 | text = cell wall catabolic process}}{{GO|id=GO:0008152 | text = metabolic process}}{{GO|id=GO:0042742 | text = defense response to bacterium}} | |||
|COMPONENT={{GO|id=GO:0005576 | text = extracellular region}} | |||
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1h6mA00 1H6Ma00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001916 Ipr001916], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000974 Ipr000974]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00062 PF00062]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=60688 d1h6ma_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P00698 P00698]</span> | |||
|uPDB=1H6M|CONSURF={{!}}- | |||
{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]] | |||
{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" | |||
{{!}} '''Toggle Conservation Colors:''' | |||
{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}} | |||
Rows = identical sequences: | |||
<jmol> | |||
<jmolButton> | |||
<script></script> | |||
<text>A [x]</text> | |||
<name>jmb_1h6m_A</name> | |||
<title>toggle chain A</title> | |||
<jsscript>ConsurfChainButton(elementClicked)</jsscript> | |||
<appendtargetsuffixtoid>true</appendtargetsuffixtoid> | |||
</jmolButton> | |||
</jmol> | |||
}} | |||
Revision as of 12:02, 23 February 2010
The page formerly under development here has been moved to Ribosomal_A_Site_Binding_Paromomycin:_A_Morph.
This page is reserved for Eric Martz and Eran Hodis, for development of a color key below Jmol.
