Mannosidase 3D structures: Difference between revisions

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New page: ==3D structures of mannosidase== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *α-MAN **1o7d - αMAN – bov...
 
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**[[1o7d]] - αMAN – bovine<br />
**[[1o7d]] - αMAN – bovine<br />
**[[6b9o]] - jbMAN – jack bean<br />
**[[6b9o]] - jbαMAN – jack bean<br />
**[[2wvy]], [[2ww2]], [[4acy]], [[4acz]], [[4ad0]], [[4c1s]] - αMAN - ''Bacterioides thetaiotaomicron''<br />
**[[6lz1]] - αMAN – fission yeast – Cryo EM<br />
**[[2wvx]], [[2wvy]], [[2ww2]], [[4acy]], [[4acz]], [[4ad0]], [[4c1s]] - αMAN - ''Bacterioides thetaiotaomicron''<br />
**[[1hcu]] - TrαMAN – ''Trichoderma reesei''<br />
**[[1hcu]] - TrαMAN – ''Trichoderma reesei''<br />
**[[7ufr]], [[7uft]] - BlaMAN – ''Bifidobacterium longum'' – Cryo EM<br />
   
   
*α-MAN class I
*α-MAN class I
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**[[2ri9]] - PcαMAN I + substrate analog<br />
**[[2ri9]] - PcαMAN I + substrate analog<br />
**[[1krf]] - PcαMAN I + kifunensine + mannose<br />
**[[1krf]] - PcαMAN I + kifunensine + mannose<br />


*α-MAN class II
*α-MAN class II


**[[2wyh]] - SpαMAN II – ''Streptococcus pyrogenes''<br />
**[[3bub]], [[1hty]], [[6rpc]] - DmαMAN II catalytic domain – ''Drosophila melanogaster''<br />
**[[3bub]], [[1hty]] - DmαMAN II catalytic domain – ''Drosophila melanogaster''<br />
**[[3bud]] - DmαMAN II catalytic domain (mutant) <br />
**[[3bud]] - DmαMAN II catalytic domain (mutant) <br />
**[[3bui]] - DmαMAN II catalytic domain (mutant) + Tris<br />
**[[3bui]] - DmαMAN II catalytic domain (mutant) + Tris<br />
**[[3bup]], [[3buq]], [[3czs]] - DmαMAN II catalytic domain (mutant) + mannose<br />
**[[3bup]], [[3buq]], [[3czs]] - DmαMAN II catalytic domain (mutant) + mannose<br />
**[[6rqz]], [[6rrh]] – DmαMAN II + mannose derivative<br />
**[[6rrj]], [[6rrn]], [[6rru]], [[6rrw]], [[6rrx]], [[6rry]], [[6rs0]]  – DmαMAN II + aziridine derivative<br />
**[[3bvt]], [[3bvu]], [[3bvv]], [[3bvw]], [[3bvx]] - DmαMAN II catalytic domain (mutant) + mannopyranoside<br />
**[[3bvt]], [[3bvu]], [[3bvv]], [[3bvw]], [[3bvx]] - DmαMAN II catalytic domain (mutant) + mannopyranoside<br />
**[[1r33]], [[1r34]] - DmαMAN II catalytic domain + mannopyranoside<br />
**[[1r33]], [[1r34]] - DmαMAN II catalytic domain + mannopyranoside<br />
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**[[1hxk]] - DmαMAN II catalytic domain + deoxymannojirimycin<br />
**[[1hxk]] - DmαMAN II catalytic domain + deoxymannojirimycin<br />
**[[1qwu]] - DmαMAN II catalytic domain (mutant) + guloside<br />
**[[1qwu]] - DmαMAN II catalytic domain (mutant) + guloside<br />
**[[1qx1]] - DmαMAN II catalytic domain (mutant) + mannosyl
**[[1qx1]] - DmαMAN II catalytic domain (mutant) + mannosyl<br />
**[[2wyh]] - SpαMAN II – ''Streptococcus pyrogenes''<br />


*α-1,2-MAN
*α-1,2-MAN
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**[[5kij]] – hαMAN + mannose derivative<br />
**[[5kij]] – hαMAN + mannose derivative<br />
**[[5kk7]] – hαMAN (mutant) + disaccharide derivative<br />
**[[5kk7]] – hαMAN (mutant) + disaccharide derivative<br />
**[[6dwo]] – EfαMAN – ''Enterococcus faecalis''<br />
**[[7fe2]] – EfαMAN (mutant) + mannose derivative<br />
**[[7nsn]] – αMAN + mannose derivative – Neobacillus novalis<br />


*β-MAN
*β-MAN


**[[6dtt]] - mMAN <br />
**[[6ddt]] - mMAN <br />
**[[6ddu]] - mMAN + β-mannose <br />
**[[6ddu]] - mMAN + β-mannose <br />
**[[4jho]] - rβMAN – rice<br />
**[[4jie]] - rβMAN + β-mannose<br />
**[[2je8]] - BtβMAN residues 26-864 <br />
**[[2je8]] - BtβMAN residues 26-864 <br />
**[[2wbk]] - BtβMAN residues 26-864 + mannopyranoside <br />
**[[2wbk]] - BtβMAN residues 26-864 + mannopyranoside <br />
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**[[1uuq]] - CmβMAN<br />
**[[1uuq]] - CmβMAN<br />
**[[2whk]] - βMAN – ''Bacillus subtilis''<br />
**[[2whk]] - βMAN – ''Bacillus subtilis''<br />
**[[4jho]] - rβMAN – rice<br />
**[[4jie]] - rβMAN + β-mannose<br />
**[[4cvu]], [[4uoj]] – βMAN - ''Trichoderma harzianum''<br />
**[[4cvu]], [[4uoj]] – βMAN - ''Trichoderma harzianum''<br />
**[[5n6u]] - βMAN + β-mannose – ''Dictyoglomus thermophilum''<br />
**[[5n6u]] - βMAN + β-mannose – ''Dictyoglomus thermophilum''<br />
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**[[6byg]], [[6byi]] - XaMAN (mutant)<br />
**[[6byg]], [[6byi]] - XaMAN (mutant)<br />
**[[6bye]] - XaMAN + β-mannose<br />
**[[6bye]] - XaMAN + β-mannose<br />
**[[4zxo]] - MAN – ''Bacterioides ovatus''<br />
**[[4zxo]] - BoMAN – ''Bacterioides ovatus''<br />
**[[2whj]] - BaMAN – ''Bacillus agaradhaerens''<br />
**[[2whj]] - BaMAN – ''Bacillus agaradhaerens''<br />
**[[2whl]] - BaMAN + β-mannose <br />
**[[2whl]] - BaMAN + β-mannose <br />
**[[6t5o]] - BsMAN – ''Bacterioides salyersiae''<br />
**[[6t7g]] - BsMAN + mannose derivative <br />
**[[6t6g]] - BsMAN + noeuromycin<br />
**[[6mp2]], [[6mpa]] - BlMAN <br />
**[[6moy]], [[6mp7]], [[6mpc]] - BlMAN (mutant) <br />
**[[7op7]] - BtMAN + aziridine derivative <br />


*Mannan endo-1,4-β-MAN
*Mannan endo-1,4-β-MAN


**[[2c0h]] - βMAN (mutant) – blue mussel<br />
**[[1rh9]] – βMAN – ''Solanum lycopersicum''<br />
**[[1gvy]], [[1odz]], [[1gw1]], [[2whm]] - PcβMAN (mutant) + mannose derivative – ''Pseudomonas cellulosa''<br />
**[[1gvy]], [[1odz]], [[1gw1]], [[2whm]] - PcβMAN (mutant) + mannose derivative – ''Pseudomonas cellulosa''<br />
**[[1j9y]], [[1r7o]] - PcβMAN<br />
**[[1j9y]], [[1r7o]] - PcβMAN<br />
**[[2c0h]] - βMAN (mutant) – blue mussel<br />
**[[2whk]], [[4yn5]], [[3jug]], [[2qha]] - βMAN – ''Bacillus subtilis''<br />
**[[2whk]], [[4yn5]], [[3jug]], [[2qha]] - βMAN – ''Bacillus subtilis''<br />
**[[1rh9]] – βMAN – ''Solanum lycopersicum''<br />
**[[3pz9]], [[3pzg]] – TpβMAN – ''Thermotoga petrophila''<br />
**[[3pz9]], [[3pzg]] – TpβMAN – ''Thermotoga petrophila''<br />
**[[3pzi]] – TpβMAN + glucose<br />
**[[3pzi]] – TpβMAN + glucose<br />
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**[[4utf]] - BxαMAN – ''Bacterioides xylanisolvens''<br />
**[[4utf]] - BxαMAN – ''Bacterioides xylanisolvens''<br />
**[[4ad5]], [[4ad4]], [[4ad3]], [[4ad2]], [[4ad1]] – BxαMAN + mannose derivative<br />
**[[4ad5]], [[4ad4]], [[4ad3]], [[4ad2]], [[4ad1]] – BxαMAN + mannose derivative<br />
*Endo-α-1,2-MAN
**[[6zdc]], [[6zdf]], [[6zdk]], [[6zfq]] – hαMAN catalytic domain<br />
**[[6zj5]] – hαMAN catalytic domain + glucosamine derivative<br />
**[[6zj1]] – hαMAN catalytic domain (mutant) + glycan fragment<br />
**[[6zfn]] – hαMAN catalytic domain (mutant) + mannobiose<br />
**[[6zfa]] – hαMAN catalytic domain + mannobiose + Glc derivative<br />
**[[6zfl]] – hαMAN catalytic domain + Glc derivative<br />
*Endo-α-1,6-MAN
**[[6ry0]] - CtαMAN – ''Chaetonium thermofilum''<br />
**[[6ry1]] – CtαMAN + mannose<br />
**[[6ry2]], [[6ry5]] – CtαMAN + mannobiose<br />
**[[6ry6]] – CtαMAN + glucosamine<br />
**[[6ry7]] – CtαMAN + laminaribiose<br />


*Exo-β-1,4-MAN
*Exo-β-1,4-MAN
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**[[4nrs]] - RmβMAN (mutant) + mannobiose<br />
**[[4nrs]] - RmβMAN (mutant) + mannobiose<br />
**[[6gvb]] - βMAN – ''Cutibacterium acnes''<br />
**[[6gvb]] - βMAN – ''Cutibacterium acnes''<br />
**[[7bob]] - MAN – ''Opitutaceae bacterium''<br />
**[[7odj]] – CmβMAN + mannose derivative<br />


*Exo-α-1,6-MAN
*Exo-α-1,6-MAN

Latest revision as of 10:51, 27 June 2023

3D structures of mannosidase3D structures of mannosidase

Updated on 27-June-2023

  • α-MAN class I
    • 1fmi - hαMAN I - human
    • 1fo2 - hαMAN I + deoxymannojirimycin
    • 1fo3 - hαMAN I+ kifunensine
    • 1x9d - hαMAN I residues 243-699 + polysaccharide analog
    • 1nxc - mαMAN I + mannose – mouse
    • 6b9p - jbMAN + inhibitor
    • 5jm0 - yαMAN I – yeast
    • 1dl2 - yαMAN I catalytic domain + mannose
    • 1g6i - yαMAN I + deoxymannojirimycin
    • 2ri8 - PcαMAN I + glycerol – Penicillium citrinum
    • 1kre, 1kkt - PcαMAN I + mannose
    • 2ri9 - PcαMAN I + substrate analog
    • 1krf - PcαMAN I + kifunensine + mannose
  • α-MAN class II
    • 3bub, 1hty, 6rpc - DmαMAN II catalytic domain – Drosophila melanogaster
    • 3bud - DmαMAN II catalytic domain (mutant)
    • 3bui - DmαMAN II catalytic domain (mutant) + Tris
    • 3bup, 3buq, 3czs - DmαMAN II catalytic domain (mutant) + mannose
    • 6rqz, 6rrh – DmαMAN II + mannose derivative
    • 6rrj, 6rrn, 6rru, 6rrw, 6rrx, 6rry, 6rs0 – DmαMAN II + aziridine derivative
    • 3bvt, 3bvu, 3bvv, 3bvw, 3bvx - DmαMAN II catalytic domain (mutant) + mannopyranoside
    • 1r33, 1r34 - DmαMAN II catalytic domain + mannopyranoside
    • 3ddf, 3ddg, 2f18, 2f1a, 2f1b - DmαMAN II catalytic domain + pyrrolidin
    • 2alw - DmαMAN II catalytic domain + noeuromycin
    • 3cv5 - DmαMAN II catalytic domain + polysaccharide
    • 3czn - DmαMAN II catalytic domain (mutant) + polysaccharide
    • 2wyi - SpαMAN II + swainsonine
    • 3blb, 1hww - DmαMAN II + swainsonine
    • 3ejp, 3ejq, 3ejr, 3ejs, 3ejt, 3eju, 2ow6, 2ow7 - DmαMAN II catalytic domain + swainsonine analog
    • 3dx0, 3dx2, 2f7o - DmαMAN II catalytic domain + mannostatine
    • 3dx1, 3dx3, 3dx4, 2f7p - DmαMAN II catalytic domain + mannostatine analog
    • 3d4y, 3d4z - DmαMAN II catalytic domain + imidazole derivative
    • 3d50, 3d51, 3d52 - DmαMAN II catalytic domain + inhibitor
    • 2fyv, 2f7q, 2f7r - DmαMAN II catalytic domain + amino-salacinol carboxylate analog
    • 1tqv, 1tqw, 1tqs, 1tqt, 1tqu - DmαMAN II catalytic domain (mutant) + seleno-salacinol
    • 1ps3 - DmαMAN II catalytic domain + kifunensine
    • 1qwn - DmαMAN II catalytic domain + intermediate
    • 1hxk - DmαMAN II catalytic domain + deoxymannojirimycin
    • 1qwu - DmαMAN II catalytic domain (mutant) + guloside
    • 1qx1 - DmαMAN II catalytic domain (mutant) + mannosyl
    • 2wyh - SpαMAN II – Streptococcus pyrogenes
  • α-1,2-MAN
    • 4ayo – CaαMAN - Caulobacter
    • 4ayp, 4ayq, 5meh – CaαMAN + mannose derivative
    • 4ayr – CaαMAN + noeuromycin
    • 5ne5 – CaαMAN + kifunensine
    • 5kkb – mαMAN + mannose derivative
    • 5kij – hαMAN + mannose derivative
    • 5kk7 – hαMAN (mutant) + disaccharide derivative
    • 6dwo – EfαMAN – Enterococcus faecalis
    • 7fe2 – EfαMAN (mutant) + mannose derivative
    • 7nsn – αMAN + mannose derivative – Neobacillus novalis
  • β-MAN
    • 6ddt - mMAN
    • 6ddu - mMAN + β-mannose
    • 4jho - rβMAN – rice
    • 4jie - rβMAN + β-mannose
    • 2je8 - BtβMAN residues 26-864
    • 2wbk - BtβMAN residues 26-864 + mannopyranoside
    • 2vqt, 2vr4, 2vjx, 2vl4, 2vmf, 2vo5, 2vot, 2vqu - BtβMAN residues 26-864 + piperidine derivative
    • 1oh4, 1of4 - TmβMAN catalytic domain + mannose – Thermotoga maritima
    • 1of3 - TmβMAN catalytic domain
    • 1uz4 - CmβMAN + inhibitor – Cellvibrio mixtus
    • 1uuq - CmβMAN
    • 2whk - βMAN – Bacillus subtilis
    • 4cvu, 4uoj – βMAN - Trichoderma harzianum
    • 5n6u - βMAN + β-mannose – Dictyoglomus thermophilum
    • 6byc - XaMAN – Xanthomonas axonopodis
    • 6byg, 6byi - XaMAN (mutant)
    • 6bye - XaMAN + β-mannose
    • 4zxo - BoMAN – Bacterioides ovatus
    • 2whj - BaMAN – Bacillus agaradhaerens
    • 2whl - BaMAN + β-mannose
    • 6t5o - BsMAN – Bacterioides salyersiae
    • 6t7g - BsMAN + mannose derivative
    • 6t6g - BsMAN + noeuromycin
    • 6mp2, 6mpa - BlMAN
    • 6moy, 6mp7, 6mpc - BlMAN (mutant)
    • 7op7 - BtMAN + aziridine derivative
  • Mannan endo-1,4-β-MAN
  • Endo-α-MAN
  • Endo-α-1,2-MAN
    • 6zdc, 6zdf, 6zdk, 6zfq – hαMAN catalytic domain
    • 6zj5 – hαMAN catalytic domain + glucosamine derivative
    • 6zj1 – hαMAN catalytic domain (mutant) + glycan fragment
    • 6zfn – hαMAN catalytic domain (mutant) + mannobiose
    • 6zfa – hαMAN catalytic domain + mannobiose + Glc derivative
    • 6zfl – hαMAN catalytic domain + Glc derivative
  • Endo-α-1,6-MAN
    • 6ry0 - CtαMAN – Chaetonium thermofilum
    • 6ry1 – CtαMAN + mannose
    • 6ry2, 6ry5 – CtαMAN + mannobiose
    • 6ry6 – CtαMAN + glucosamine
    • 6ry7 – CtαMAN + laminaribiose
  • Exo-β-1,4-MAN
    • 4lyp - RmβMAN – Rhizomucor miehei
    • 4lyq, 4lyr - RmβMAN (mutant)
    • 4nrr - RmβMAN (mutant) + mannosyl-fructose
    • 4nrs - RmβMAN (mutant) + mannobiose
    • 6gvb - βMAN – Cutibacterium acnes
    • 7bob - MAN – Opitutaceae bacterium
    • 7odj – CmβMAN + mannose derivative
  • Exo-α-1,6-MAN
    • 5m7i - CpαMAN (mutant) + mannobiose – Clostridium perfringenes
    • 5m7y - CpαMAN (mutant) + mannotriose
    • 6rqk - CpMAN + mannoimidazole
  • β-MAN/β-glucosidase

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Michal Harel
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