Crystal Structure of the Human Cytomegalovirus DNA Polymerase Subunit, UL44Crystal Structure of the Human Cytomegalovirus DNA Polymerase Subunit, UL44

Structural highlights

1t6l is a 1 chain structure with sequence from Hcmv. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Gene:UL44 (HCMV)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[VPAP_HCMVA] Accessory subunit of the DNA polymerase that acts to increase the processivity of polymerization.[1]

Evolutionary Conservation

 

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

The human cytomegalovirus DNA polymerase consists of a catalytic subunit, UL54, and a presumed processivity factor, UL44. We have solved the crystal structure of residues 1-290 of UL44 to 1.85 A resolution by multiwavelength anomalous dispersion. The structure reveals a dimer of UL44 in the shape of a C clamp. Each monomer of UL44 shares its overall fold with other processivity factors, including herpes simplex virus UL42, which is a monomer that binds DNA directly, and the sliding clamp, PCNA, which is a trimer that surrounds DNA, although these proteins share no obvious sequence homology. Analytical ultracentrifugation and gel filtration measurements demonstrated that UL44 also forms a dimer in solution, and substitution of large hydrophobic residues along the homodimer interface with alanine disrupted dimerization and decreased DNA binding. UL44 represents a hybrid processivity factor as it binds DNA directly like UL42, but forms a C clamp that may surround DNA like PCNA.

The cytomegalovirus DNA polymerase subunit UL44 forms a C clamp-shaped dimer.,Appleton BA, Loregian A, Filman DJ, Coen DM, Hogle JM Mol Cell. 2004 Jul 23;15(2):233-44. PMID:15260974[2]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Kim YE, Ahn JH. Role of the specific interaction of UL112-113 p84 with UL44 DNA polymerase processivity factor in promoting DNA replication of human cytomegalovirus. J Virol. 2010 Sep;84(17):8409-21. doi: 10.1128/JVI.00189-10. Epub 2010 Jun 10. PMID:20538862 doi:http://dx.doi.org/10.1128/JVI.00189-10
  2. Appleton BA, Loregian A, Filman DJ, Coen DM, Hogle JM. The cytomegalovirus DNA polymerase subunit UL44 forms a C clamp-shaped dimer. Mol Cell. 2004 Jul 23;15(2):233-44. PMID:15260974 doi:10.1016/j.molcel.2004.06.018

1t6l, resolution 1.85Å

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