8tkb: Difference between revisions

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'''Unreleased structure'''


The entry 8tkb is ON HOLD  until Paper Publication
==tRNA 2-phosphotransferase (Tpt1) from Pyrococcus horikoshii in complex with 5'-AMP==
 
<StructureSection load='8tkb' size='340' side='right'caption='[[8tkb]], [[Resolution|resolution]] 1.71&Aring;' scene=''>
Authors: Jacewicz, A., Dantuluri, S., Shuman, S.
== Structural highlights ==
 
<table><tr><td colspan='2'>[[8tkb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8TKB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8TKB FirstGlance]. <br>
Description: tRNA 2-phosphotransferase (Tpt1) from Pyrococcus horikoshii in complex with 5''-AMP
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.71&#8491;</td></tr>
[[Category: Unreleased Structures]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
[[Category: Jacewicz, A]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8tkb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8tkb OCA], [https://pdbe.org/8tkb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8tkb RCSB], [https://www.ebi.ac.uk/pdbsum/8tkb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8tkb ProSAT]</span></td></tr>
[[Category: Dantuluri, S]]
</table>
[[Category: Shuman, S]]
== Function ==
[https://www.uniprot.org/uniprot/KPTA_PYRHO KPTA_PYRHO] Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate (APPR>P). May function as an ADP-ribosylase (By similarity).
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Pyrococcus horikoshii OT3]]
[[Category: Dantuluri S]]
[[Category: Jacewicz A]]
[[Category: Shuman S]]

Latest revision as of 08:53, 19 June 2024

tRNA 2-phosphotransferase (Tpt1) from Pyrococcus horikoshii in complex with 5'-AMPtRNA 2-phosphotransferase (Tpt1) from Pyrococcus horikoshii in complex with 5'-AMP

Structural highlights

8tkb is a 1 chain structure with sequence from Pyrococcus horikoshii OT3. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.71Å
Ligands:, , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

KPTA_PYRHO Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1-2-cyclic phosphate (APPR>P). May function as an ADP-ribosylase (By similarity).

8tkb, resolution 1.71Å

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OCA