Believe It or Not!: Difference between revisions

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'''The most common ...'''
'''The most common ...'''
* The most common Sources are [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9606 Homo sapiens], present in 43,358 PDB structures and [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=562 Escherichia coli], present in 10,847 PDB structures.
* The most common Sources are [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9606 Homo sapiens], present in 43,342 PDB structures and [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=562 Escherichia coli], present in 10,793 PDB structures.
* The most common Ligand is '''GOL''', present in 23,014 PDB structures (excluding SO4)
* The most common Ligand is '''GOL''', present in 23,029 PDB structures (excluding SO4)
* The most common Space group is '''P 21 21''', present in 32,728 PDB structures.
* The most common Space group is '''P 21 21''', present in 32,728 PDB structures.


'''The most conspicuous ...'''
'''The most conspicuous ...'''
* The least popular experiment type is Solution Scattering used on 3 structures ([[1ntj]], [[1ntl]], [[1r70]]) over 225,683 ( 0.00%)
* The least popular experiment type is Solution Scattering used on 3 structures ([[1ntj]], [[1ntl]], [[1r70]]) over 225,948 ( 0.00%)
* The most popular experiment type is X-ray Diffraction used on 188,112 structures over 225,683 (83.35%)
* The most popular experiment type is X-ray Diffraction used on 188,272 structures over 225,948 (83.33%)
* The structures with the most biomolecules are [[2zzs]], [[4dx9]] with 32 each and [[5lhy]] with 30.
* The structures with the most biomolecules are [[2zzs]], [[4dx9]] with 32 each and [[5lhy]] with 30.
* The PDB structure with the most models is [[2hyn]], with 184 models.
* The PDB structure with the most models is [[2hyn]], with 184 models.
* The PDB structures with the most related structures are [[4b1t]], [[4b2c]], [[4b2b]]  with 287 related structures each.
* The PDB structures with the most related structures are [[4b2c]], [[4b2b]], [[4b1t]]  with 287 related structures each.
* The PDB structure with the most chains is [[4v99]]  with 480 chains.
* The PDB structure with the most chains is [[4v99]]  with 480 chains.
* The PDB structures with the longest chain are [[4v5x]], [[4v5x]]  with 7,249 amino acids (alpha carbons only) each.
* The PDB structures with the longest chain are [[4v5x]], [[4v5x]]  with 7,249 amino acids (alpha carbons only) each.
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* The PDB structures with the most ligands are [[3wu2]], [[5b5e]], [[5b66]], [[5h2f]], [[5ws6]]  with 21 ligands each.
* The PDB structures with the most ligands are [[3wu2]], [[5b5e]], [[5b66]], [[5h2f]], [[5ws6]]  with 21 ligands each.
* The PDB structures with the largest number of distinct chemical elements are [[3cpw]], [[3l4p]], [[3ow2]], [[5t5i]], [[5t61]] with 12 elements each.
* The PDB structures with the largest number of distinct chemical elements are [[3cpw]], [[3l4p]], [[3ow2]], [[5t5i]], [[5t61]] with 12 elements each.
* The 10 most popular Chemical Elements, excluding C,O,S,P,H,Na,Cl,K are Zinc (Zn) on 12,587 PDB, Magnesium (Mg) on 12,132 PDB, Calcium (Ca) on 9,322 PDB, Selenium (Se) on 8,428 PDB, Iron (Fe) on 7,551 PDB, Fluorine (F) on 4,355 PDB, Manganese (Mn) on 2,868 PDB, Bromine (Br) on 1,462 PDB, Nickel (Ni) on 1,411 PDB and Copper (Cu) on 1,359 PDB.
* The 10 most popular Chemical Elements, excluding C,O,S,P,H,Na,Cl,K are Zinc (Zn) on 12,581 PDB, Magnesium (Mg) on 12,125 PDB, Calcium (Ca) on 9,317 PDB, Selenium (Se) on 8,416 PDB, Iron (Fe) on 7,544 PDB, Fluorine (F) on 4,354 PDB, Manganese (Mn) on 2,866 PDB, Bromine (Br) on 1,462 PDB, Nickel (Ni) on 1,411 PDB and Copper (Cu) on 1,359 PDB.
* The most exotic Chemical Elements are Americium (Am [[4zhg]]), Bismuth (Bi [[4h0w]]), Californium (Cf [[5kic]]), Curium (Cm [[4zhf]]), Dysprosium (Dy [[4ll7]]), Neon (Ne [[2axt]]), Plutonium (Pu [[4zhd]]), Scandium (Sc [[3zi4]]), Titanium (Ti [[5dyh]]) found in one PDB structure each.
* The most exotic Chemical Elements are Americium (Am [[4zhg]]), Bismuth (Bi [[4h0w]]), Californium (Cf [[5kic]]), Curium (Cm [[4zhf]]), Dysprosium (Dy [[4ll7]]), Neon (Ne [[2axt]]), Plutonium (Pu [[4zhd]]), Scandium (Sc [[3zi4]]), Titanium (Ti [[5dyh]]) found in one PDB structure each.
* The PDB structure with the largest file is [[4pth]]  with 25,711,441 bytes (compressed).
* The PDB structure with the largest file is [[4pth]]  with 25,711,441 bytes (compressed).
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* The PDB structures solved with '''X-ray Diffraction''' with the '''best resolution''' are [[3nir]], [[5d8v]] with 0.48 Å each.
* The PDB structures solved with '''X-ray Diffraction''' with the '''best resolution''' are [[3nir]], [[5d8v]] with 0.48 Å each.
* The '''mean resolution''' for PDB structures solved with '''Electron Crystallography''' is 2.72 ± 2.92 based on 238 structures
* The '''mean resolution''' for PDB structures solved with '''Electron Crystallography''' is 2.72 ± 2.92 based on 238 structures
* The '''mean resolution''' for PDB structures solved with '''Electron Microscopy''' is 4.06 ± 3.22 based on 22,496 structures
* The '''mean resolution''' for PDB structures solved with '''Electron Microscopy''' is 4.06 ± 3.21 based on 22,597 structures
* The '''mean resolution''' for PDB structures solved with '''Fiber Diffraction''' is 3.37 ± 0.7 based on 37 structures
* The '''mean resolution''' for PDB structures solved with '''Fiber Diffraction''' is 3.37 ± 0.7 based on 37 structures
* The '''mean resolution''' for PDB structures solved with '''Neutron Diffraction''' is 1.93 ± 0.35 based on 82 structures
* The '''mean resolution''' for PDB structures solved with '''Neutron Diffraction''' is 1.93 ± 0.35 based on 82 structures
* The '''mean resolution''' for PDB structures solved with '''Powder Diffraction''' is 2.96 ± 0.35 based on 7 structures
* The '''mean resolution''' for PDB structures solved with '''Powder Diffraction''' is 2.96 ± 0.35 based on 7 structures
* The '''mean resolution''' for PDB structures solved with '''Solution Scattering''' is 30 ± 0 based on 3 structures
* The '''mean resolution''' for PDB structures solved with '''Solution Scattering''' is 30 ± 0 based on 3 structures
* The '''mean resolution''' for PDB structures solved with '''X-ray Diffraction''' is 2.12 ± 0.59 based on 188,112 structures
* The '''mean resolution''' for PDB structures solved with '''X-ray Diffraction''' is 2.12 ± 0.59 based on 188,272 structures
* The PDB structure solved with '''Electron Crystallography''' with the '''worst resolution''' is [[2dfs]] with 24.0 Å.
* The PDB structure solved with '''Electron Crystallography''' with the '''worst resolution''' is [[2dfs]] with 24.0 Å.
* The PDB structures solved with '''Electron Microscopy''' with the '''worst resolution''' are [[1m8q]], [[1mvw]], [[1o18]], [[1o19]], [[1o1a]], [[1o1b]], [[1o1c]], [[1o1d]], [[1o1e]], [[1o1f]], [[1o1g]] with 70.0 Å each.
* The PDB structures solved with '''Electron Microscopy''' with the '''worst resolution''' are [[1m8q]], [[1mvw]], [[1o18]], [[1o19]], [[1o1a]], [[1o1b]], [[1o1c]], [[1o1d]], [[1o1e]], [[1o1f]], [[1o1g]] with 70.0 Å each.
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'''Overall Statistics ...'''
'''Overall Statistics ...'''
* The mean PDB file is 189.05K ± 328.56K based on 129,452 files.
* The mean PDB file is 189.02K ± 328.52K based on 129,452 files.
* There are 4 structure files with 12 citations ([[1dtq]],[[1dtt]],[[1het]],[[3u87]]) and 5 structure files with 10 citations ([[1cc4]],[[1cc6]],[[1cj2]],[[1cj3]],[[1cj4]]).
* There are 4 structure files with 12 citations ([[1dtq]],[[1dtt]],[[1het]],[[3u87]]) and 5 structure files with 10 citations ([[1cc4]],[[1cc6]],[[1cj2]],[[1cj3]],[[1cj4]]).
''Updated by [http://oca.weizmann.ac.il/oca OCA ] on Sat Oct  5 07:29:19 2024''
''Updated by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct  9 13:33:47 2024''
==Notes==
==Notes==
*[[4tst]] is a useful PDB id for a non-existing structure *Search for this page with the word '''BelieveItOrNot''' -- all the words in the real title "Believe It Or Not!" are so common that they are ignored by the search index mechanism (see [[Help:Stop Words]]), so you will not succeed searching for the real title. This page is also linked to the [[Main Page]].
*[[4tst]] is a useful PDB id for a non-existing structure *Search for this page with the word '''BelieveItOrNot''' -- all the words in the real title "Believe It Or Not!" are so common that they are ignored by the search index mechanism (see [[Help:Stop Words]]), so you will not succeed searching for the real title. This page is also linked to the [[Main Page]].

Revision as of 13:49, 17 October 2024

A list of Useful, Useless or simply Interesting facts on Proteins, Structures and what's around them, automatically updated by OCA, the browser and database for structure and function.

The most common ...

  • The most common Sources are Homo sapiens, present in 43,342 PDB structures and Escherichia coli, present in 10,793 PDB structures.
  • The most common Ligand is GOL, present in 23,029 PDB structures (excluding SO4)
  • The most common Space group is P 21 21, present in 32,728 PDB structures.

The most conspicuous ...

Determination methods ...

  • The PDB structure solved with Electron Crystallography with the best resolution is 6kj3 with 0.6 Å.
  • The PDB structure solved with Electron Microscopy with the best resolution is 8rqb with 1.09 Å.
  • The PDB structures solved with Fiber Diffraction with the best resolution are 1hgv, 1hgz, 1hh0 with 2.4 Å each.
  • The PDB structure solved with Neutron Diffraction with the best resolution is 4ar3 with 1.05 Å.
  • The PDB structure solved with Powder Diffraction with the best resolution is 7qac with 2.29 Å.
  • The PDB structures solved with Solution Scattering with the best resolution are 1ntj, 1ntl, 1r70 with 30 Å each.
  • The PDB structures solved with X-ray Diffraction with the best resolution are 3nir, 5d8v with 0.48 Å each.
  • The mean resolution for PDB structures solved with Electron Crystallography is 2.72 ± 2.92 based on 238 structures
  • The mean resolution for PDB structures solved with Electron Microscopy is 4.06 ± 3.21 based on 22,597 structures
  • The mean resolution for PDB structures solved with Fiber Diffraction is 3.37 ± 0.7 based on 37 structures
  • The mean resolution for PDB structures solved with Neutron Diffraction is 1.93 ± 0.35 based on 82 structures
  • The mean resolution for PDB structures solved with Powder Diffraction is 2.96 ± 0.35 based on 7 structures
  • The mean resolution for PDB structures solved with Solution Scattering is 30 ± 0 based on 3 structures
  • The mean resolution for PDB structures solved with X-ray Diffraction is 2.12 ± 0.59 based on 188,272 structures
  • The PDB structure solved with Electron Crystallography with the worst resolution is 2dfs with 24.0 Å.
  • The PDB structures solved with Electron Microscopy with the worst resolution are 1m8q, 1mvw, 1o18, 1o19, 1o1a, 1o1b, 1o1c, 1o1d, 1o1e, 1o1f, 1o1g with 70.0 Å each.
  • The PDB structures solved with Fiber Diffraction with the worst resolution are 3hqv, 3hr2 with 5.16 Å each.
  • The PDB structure solved with Neutron Diffraction with the worst resolution is 1wqz with 3 Å.
  • The PDB structure solved with Powder Diffraction with the worst resolution is 1xft with 3.35 Å.
  • The PDB structures solved with Solution Scattering with the worst resolution are 1ntj, 1ntl, 1r70 with 30 Å each.
  • The PDB structure solved with X-ray Diffraction with the worst resolution is 2tma with 15 Å.

Overall Statistics ...

  • The mean PDB file is 189.02K ± 328.52K based on 129,452 files.
  • There are 4 structure files with 12 citations (1dtq,1dtt,1het,3u87) and 5 structure files with 10 citations (1cc4,1cc6,1cj2,1cj3,1cj4).

Updated by OCA on Wed Oct 9 13:33:47 2024

NotesNotes

  • 4tst is a useful PDB id for a non-existing structure *Search for this page with the word BelieveItOrNot -- all the words in the real title "Believe It Or Not!" are so common that they are ignored by the search index mechanism (see Help:Stop Words), so you will not succeed searching for the real title. This page is also linked to the Main Page.

See AlsoSee Also

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA, Jaime Prilusky, Eric Martz, Joel L. Sussman