Kinesin 3D Structures: Difference between revisions
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Michal Harel (talk | contribs) No edit summary |
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*KIF1A, KIF1B, KIF1C or kinesin-3 | *KIF1A, KIF1B, KIF1C or kinesin-3 | ||
**[[1bg2]] – hKIF MD - human<br /> | |||
**[[1bg2]] – hKIF MD | |||
**[[4hna]], [[4lnu]] – hKIF1 + Tubulin + designed ankyrin repeat protein + Mg-ADP + GDP + GTP + AlF4<br /> | **[[4hna]], [[4lnu]] – hKIF1 + Tubulin + designed ankyrin repeat protein + Mg-ADP + GDP + GTP + AlF4<br /> | ||
**[[4uxy]] – hKIF1 MD + Tubulin + GDP + GTP – Cryo EM<br /> | **[[4uxy]] – hKIF1 MD + Tubulin + GDP + GTP – Cryo EM<br /> | ||
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**[[2wbe]] – bKIF MD+FNL+Tubulin +AMPPNP – bovine <br /> | **[[2wbe]] – bKIF MD+FNL+Tubulin +AMPPNP – bovine <br /> | ||
**[[3edl]] – bKIF MD+ Tubulin – EM<br /> | **[[3edl]] – bKIF MD+ Tubulin – EM<br /> | ||
**[[4atx]] - rKIF MD+ Tubulin – rat - Cryo EM<br /> | **[[4atx]] - rKIF MD+ Tubulin – rat - Cryo EM<br /> | ||
* | *KIF-like 1A, KIF-like 1B, KIF-like 1C | ||
**[[ | **[[4ejq]], [[4egx]] – hKIFL 1A CC1-FHA domain 430-607<br /> | ||
**[[2gry]] – | **[[5lt0]], [[5lt1]], [[5lt2]], [[5lt3]], [[5lt4]] – hKIFL 1 MD (mutant) <br /> | ||
**[[6bbn]] – | **[[2g1l]] – hKIFL 1C FHA domain<br /> | ||
**[[5mio]] – | **[[5wdh]] – hKIFL 1C MD<br /> | ||
**[[1v8j]], [[5xja]], [[5xjb]] – | **[[2rep]] – hKIFL 1C MD<br /> | ||
**[[1i5s]] | **[[2eh0]] – hKIFL 1B FHA domain – NMR<br /> | ||
**[[1i6i]] | **[[2hxh]] – pKIFL 1A head+ADP - pig<br /> | ||
**[[1v8k]] | **[[2hxf]] – pKIFL 1A head+AMPPNP<br /> | ||
**[[1ia0]] – pKIFL 1A MD+Tubulin +ATP <br /> | |||
**[[2zfi]], [[2zfj]], [[2zfk]], [[2zfl]], [[2zfm]] – mKIFL 1A – mouse<br /> | |||
**[[1vfv]], [[1vfw]] – mKIFL 1A MD+Mg-AMPPNP<br /> | |||
**[[1vfx]] – mKIFL 1A MD+ADP-Mg-AlFx<br /> | |||
**[[7eo9]], [[7eob]] – mKIFL 1A MD (mutant) +ADP-Mg-AlFx<br /> | |||
**[[1vfz]] – mKIFL 1A MD+ADP-Mg-VO4<br /> | |||
**[[2owm]] – NcKIFL 1C MD – ''Neurospora crassa''<br /> | |||
*KIF-like 2A, KIF-like 2C or kinesin-13 | |||
**[[2heh]], [[4ubf]] – hKIFL 2C<br /> | |||
**[[2gry]] – hKIFL 2+ADP<br /> | |||
**[[6bbn]] – hKIFL 2A MD + Tubulin + Darpin<br /> | |||
**[[5mio]] – hKIFL 2C MD + Tubulin <br /> | |||
**[[1v8j]], [[5xja]], [[5xjb]] – mKIFL 2C MD+Mg-ADP<br /> | |||
**[[1i5s]] – mKIFL 2C MD (mutant)+Mg-ADP<br /> | |||
**[[1i6i]] – mKIFL 2C MD (mutant)+Mg-AMPPCP<br /> | |||
**[[1v8k]] – mKIFL 2C MD+Mg-AMPPNP<br /> | |||
**[[2vvg]] – KIF2 MD – ''Giardia intestinalis''<br /> | **[[2vvg]] – KIF2 MD – ''Giardia intestinalis''<br /> | ||
* | *KIF-like 3B, KIF-like 3C or kinesin-2 | ||
**[[3b6u]], [[3b6v]] – | **[[3b6u]], [[3b6v]] – hKIFL 3B MD<br /> | ||
**[[5wde]] – | **[[2h58]], [[5wde]] – hKIFL 3C+ADP<br /> | ||
*KIF4A, KIF4B or kinesin-4 | *KIF4A, KIF4B or kinesin-4 | ||
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**[[3j6h]] – mKIF5C MD+Mg-GTP + G2P + tubulin <br /> | **[[3j6h]] – mKIF5C MD+Mg-GTP + G2P + tubulin <br /> | ||
**[[3j8x]], [[3j8y]] – mKIF5C MD+ GTP + GDP + tubulin<br /> | **[[3j8x]], [[3j8y]] – mKIF5C MD+ GTP + GDP + tubulin<br /> | ||
**[[2y5w]], [[2y65]] - DmKIF MD – Drosophila melanogasgter<br /> | |||
**[[4pxt]], [[4pxu]] – DmKIF MD (mutant)<br /> | |||
**[[1n6m]] – DmKIF MD+FNL<br /> | |||
**[[3l1c]] – DmNCD (mutant)<br /> | |||
*KIF-like 7 or kinesin-4 | |||
**[[4a14]] – hKIFL 7 MD <br /> | |||
**[[2xt3]] – hKIFL 7 MD (mutant)<br /> | |||
**[[6mlr]] – hKIFL 7 MD + Tubulin + GTP + GDP + ANP – Cryo EM<br /> | |||
**[[6mlq]] – hKIFL 7 MD + Tubulin + GTP + GDP + ADP – Cryo EM<br /> | |||
**[[7rx0]] – hKIFL 7 MD + GLI2 ANTubulin + GTP + GDP + G2P – Cryo EM<br /> | |||
* | *KIF-like 9 or kinesin-9 | ||
**[[ | **[[3nwn]] – hKIFL 9+ADP<br /> | ||
* | *KIF-like 10A or kinesin-6 | ||
**[[ | **[[3j2u]] – hKIFL 10A head domain – Cryo EM<br /> | ||
**[[6b0c]], [[6b0l]] – DmKIFL 10A + tubulin + GTP + GDP + ANP + Mg – Cryo EM<br /> | |||
**[[6vpp]] – DmKIFL 61F + tubulin + GTP + GDP + Mg – Cryo EM<br /> | |||
**[[6vpo]] – DmKIFL 61F + tubulin + GTP + GDP + ANP + Mg – Cryo EM<br /> | |||
**[[6b0i]] – DmKIFL 10A + tubulin + GTP + GDP + Mg – Cryo EM<br /> | |||
* | *KIF-like 11 or kinesin-5 or Eg5 | ||
**[[ | **[[4b7b]] – hKIFL 11 (mutant) + ADP + Co + Cd <br /> | ||
**[[ | **[[3ken]], [[2wog]], [[2x2r]], [[2xae]], [[4bbg]] – hKIFL 11 +S-trityl-L-cysteine derivative + ADP + Mg<br /> | ||
**[[ | **[[3wpn]] – hKIFL 11 +inhibitor <br /> | ||
**[[ | **[[2uyi]], [[2uym]], [[2gm1]], [[2pg2]], [[2fme]], [[2x7d]], [[2x7c]], [[2ieh]], [[3cjo]], [[2g1q]], [[2fl2]], [[2fl6]], [[1yrs]], [[2q2y]], [[2fky]], [[2q2z]], [[3k3b]], [[2x7e]], [[4a50]], [[4a51]], [[3zcw]], [[6g6y]], **[[6g6z]], [[6hkx]], [[6hky]] - hKIF11+inhibitor +ADP + Mg<br /> | ||
**[[ | **[[4bxn]], [[4as7]] – hKIFL 11+inhibitor +ADP + Cd<br /> | ||
**[[3l9h]] – hKIFL 11+inhibitor +ADP <br /> | |||
**[[4zhi]] – hKIFL 11 MD +ADP<br /> | |||
**[[1x88]], [[1q0b]] – hKIFL 11 +Mg + ADP+monastrol <br /> | |||
**[[4ap0]], [[4a5y]] – hKIFL 11 +MgADP + ispinesib + Mg<br /> | |||
**[[3hqd]] – hKIFL 11 +AMPPNP+Mg<br /> | |||
**[[1ii6]], [[4a1z]], [[4a28]] – hKIFL11 +ADP+Mg<br /> | |||
**[[4zca]], [[6tle]], [[6trl]], [[6y1i]] – hKIFL 11 (mutant) +ADP+Mg<br /> | |||
**[[3k5e]] – hKIFL 11 +ADP+enastrol + Mg<br /> | |||
**[[4aqv]], [[4aqw]] – hKIFL 11 (mutant) + tubulin + GDP + GTP + Mg – Cryo EM<br /> | |||
**[[4ck5]], [[4ck6]], [[4ck7]] – hKIFL 11 (mutant) + tubulin + ADP + GDP + GTP + Mg – Cryo EM<br /> | |||
**[[6ta3]], [[6tiw]] – hKIFL 11 MD (mutant) + tubulin + G2P + quinolin derivative + Mg – Cryo EM<br /> | |||
**[[6ta4]] – hKIFL 11 MD + tubulin + G2P + ANP + Mg – Cryo EM<br /> | |||
**[[5m5i]], [[5m5l]], [[5m5m]], [[5m5n]], [[5m5o]] – fyKIFL Cut7 MD + tubulin + GDP + GTP + ANP + taxol – fission yeast – Cryo EM<br /> | |||
**[[6s8m]] – fyKIFL Cut7 MD + tubulin + GDP + GTP + ANP – Cryo EM<br /> | |||
*KIF11 | *KIF11 | ||
**[[5mm4]], [[5mm7]] – UmKIF + tubulin + GDP + GTP + ANP + taxol – Ustilago maydis – Cryo EM<br /> | |||
**[[5mm4]], [[5mm7]] – UmKIF + tubulin + GDP + GTP + ANP + taxol – | |||
**[[7nb8]] – PfKIF MD + tubulin + GTP + G2P – ''Plasmodium falciparum'' – Cryo EM<br /> | **[[7nb8]] – PfKIF MD + tubulin + GTP + G2P – ''Plasmodium falciparum'' – Cryo EM<br /> | ||
**[[7nba]] – PfKIF MD + tubulin + GTP + G2P + ANP – Cryo EM<br /> | **[[7nba]] – PfKIF MD + tubulin + GTP + G2P + ANP – Cryo EM<br /> | ||
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*KIF13A, KIF13B or kinesin-3 | *KIF13A, KIF13B or kinesin-3 | ||
**[[3gbj]] – hKIF13B MD+ADP <br /> | **[[3gbj]] – hKIF13B MD+ADP <br /> | ||
**[[5b64]] – mKIF13B MBS domain + MAGUK<br /> | |||
**[[5b64]] – mKIF13B + MAGUK<br /> | |||
**[[3kin]], [[2kin]] – rKIF MD <br /> | **[[3kin]], [[2kin]] – rKIF MD <br /> | ||
**[[6a1z]] – rKIF13B<br /> | **[[6a1z]] – rKIF13B<br /> | ||
**[[5zbs]], [[6a20]], [[7d8v]] – rKIF13B (mutant)<br /> | **[[5zbs]], [[6a20]], [[7d8v]] – rKIF13B (mutant)<br /> | ||
**[[7d8v]] – rKIF13B (mutant) + ADP<br /> | **[[7d8v]] – rKIF13B (mutant) + ADP<br /> | ||
**[[5zbr]] – rKIF13B + AMPPNP<br /> | **[[5zbr]] – rKIF13B MD + AMPPNP<br /> | ||
* KIF-like 13B | |||
**[[2cow]] – hKIFL 13B CAP-gly domain – NMR<br /> | |||
**[[3fm8]] – hKIFL 13B FHA domain + centaurin-alpha-1<br /> | |||
**[[5djo]] – mKIFL 13A CC1-FHA domain <br /> | |||
**[[5djn]] – mKIFL 13A coiled-coil domain (mutant)<br /> | |||
*KIF-like 14 or kinesin-3 | |||
**[[6wwe]], [[6wwi]], [[6wwt]] – hKIF14L MD + Tubulin + GTP + GDP – Cryo EM<br /> | |||
**[[6wwf]], [[6wwh]], [[6wwg]], [[6wwj]], [[6wwk]], [[6wwl]], [[6wwm]], [[6wwn]], [[6wwo]], [[6wwp]], [[6wwq]], [[6wwr]], [[6wws]], [[6wwu]], [[6wwv]], [[7lvq]], [[7lvr]] – mKIF14L MD + Tubulin + nucleotides – Cryo EM<br /> | |||
* | *KIF-like Kar3 | ||
**[[1f9t]], [[1f9u]], [[1f9v]], [[1f9w]], [[3kar]] – yKIFL Kar3 MD (mutant) – yeast<br /> | |||
**[[4etp]] – yKIFL Kar3 MD (mutant) + VIK1<br /> | |||
**[[1f9t]], [[1f9u]], [[1f9v]], [[1f9w]], [[3kar]] | |||
**[[4etp]] | |||
* | *KIF-like 15 or kinesin-12 | ||
**[[4bn2]] – | **[[4bn2]] – hKIFL 15 MD<br /> | ||
**[[7ryp]] – | **[[7ryp]] – hKIFL 15 MD + KIF-binding protein – Cryo EM<br /> | ||
**[[6zpi]] – hKIFL 15 MD + tubulin + GDP + GTP + Mg – Cryo EM<br /> | |||
* | *KIF-like 16B or kinesin-3 | ||
**[[2v14]] | **[[2v14]], [[6ee0]] – hKIFL 16B PX homology domain 1179-1312<br /> | ||
* | *KIF-like 18A or kinesin-8 | ||
**[[3lre]] | **[[3lre]] – hKIFL 18A MD <br /> | ||
**[[5oam]] | **[[5oam]] – hKIFL 18A MD + tubulin + GTP<br /> | ||
**[[5ocu]] | **[[5ocu]] – hKIFL 18A MD + tubulin + GTP + GDP + ANP<br /> | ||
**[[5ogc]] | **[[5ogc]] – hKIFL 18A MD + tubulin + GTP + GDP + taxol<br /> | ||
**[[7rsi]] – | **[[7rsi]] – hKIFL 18A MD + KIF-binding protein + ADP – Cryo EM<br /> | ||
* | *KIF-like 19A or kinesin-8 | ||
**[[5gsy]] – | **[[5gsy]] – mKIFL 19A MD + GDP<br /> | ||
**[[5gsz]] – | **[[5gsz]] – mKIFL 19A MD + ADP<br /> | ||
* | *KIF-like 20A or kinesin-6 | ||
**[[6yip]] – | **[[6yip]] – hKIFL 20A coiled coil domain 596-668 <br /> | ||
**[[5nd3]] – | **[[5nd3]] – mKIFL 20A MD + tubulin <br /> | ||
**[[5nd2]], [[5nd4]] – | **[[5nd2]], [[5nd4]] – mKIFL 20A MD + tubulin + ADP <br /> | ||
**[[5nd7]] – | **[[5nd7]] – mKIFL 20A MD + tubulin + AMPPNP <br /> | ||
**[[5lef]] – | **[[5lef]] – mKIFL 20A residues 603-665 + RAB-6 <br /> | ||
**[[5x3e]] - | **[[5x3e]] - KIFL MD - Caenorhabditis elegans<br /> | ||
* | *KIF-like 21A or kinesin-4 | ||
**[[5d3a]] – | **[[5d3a]] – hKIFL 21A coiled coil domain 938-1017 <br /> | ||
**[[7klj]] – | **[[7klj]] – hKIFL 21A WD-repeat domain 1324-1640 <br /> | ||
* | *KIF-like 22 or kinesin-10 | ||
**[[2edu]] – | **[[2edu]] – hKIFL 22 C-terminal – NMR<br /> | ||
**[[6nje]] – | **[[3bfn]] – hKIFL 22 MD<br /> | ||
**[[6nje]] – hKIFL 22 MD +ADP<br /> | |||
*KIF23 or kinesin-6 | *KIF23 or kinesin-6 | ||
**[[3vhx]] – | **[[3vhx]] – hKIFL 23 794-911 + ADP-ribosylation factor 6 <br /> | ||
**[[2ncd]], [[1cz7]] – DmKIF MD non-claret disjuctional (NCD) dimer | **[[2ncd]], [[1cz7]] – DmKIF MD non-claret disjuctional (NCD) dimer <br /> | ||
**[[3l1c]] – DmNCD (mutant)<br /> | **[[3l1c]] – DmNCD (mutant)<br /> | ||
**[[1ry6]] – PfKIF MD <br /> | **[[1ry6]] – PfKIF MD <br /> | ||
**[[7nba]] – PfKlF + tubulin + GTP + G2P + ANP + Mg – Cryo EM<br /> | **[[7nba]] – PfKlF + tubulin + GTP + G2P + ANP + Mg – Cryo EM<br /> | ||
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**[[6fv0]] – mKLC1 TPR domain + nanobody<br /> | **[[6fv0]] – mKLC1 TPR domain + nanobody<br /> | ||
**[[5ojf]] – mKLC2 TPR domain <br /> | **[[5ojf]] – mKLC2 TPR domain <br /> | ||
**[[3zfw]], [[5fjy]], [[6ejn]], [[6swu]] - mKLC2 TPR domain + peptide<br /> | **[[3zfw]], [[5fjy]], [[6ejn]], [[6swu]] - mKLC2 TPR domain + peptide<br /> | ||
*NOD | *NOD | ||
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**[[3dcb]] - DmNOD catalytic core domain+AMPPNP + Mg<br /> | **[[3dcb]] - DmNOD catalytic core domain+AMPPNP + Mg<br /> | ||
**[[3dco]] - DmNOD catalytic core domain+ cTubulin + ADP + GDP + GTP + Mg<br /> | **[[3dco]] - DmNOD catalytic core domain+ cTubulin + ADP + GDP + GTP + Mg<br /> | ||
**[[3pxn]] - DmNOD catalytic core domain+ADP + Mn<br /> | |||
}} | }} | ||
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