5ie3: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older editNewer edit →
No edit summary
No edit summary
Line 1: Line 1:


==Crystal structure of a plant enzyme==
==Crystal structure of a plant enzyme==
<StructureSection load='5ie3' size='340' side='right' caption='[[5ie3]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
<StructureSection load='5ie3' size='340' side='right'caption='[[5ie3]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5ie3]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IE3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5IE3 FirstGlance]. <br>
<table><tr><td colspan='2'>[[5ie3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IE3 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5IE3 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=OXD:OXALIC+ACID'>OXD</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=OXD:OXALIC+ACID'>OXD</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5ie2|5ie2]], [[5ie0|5ie0]]</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5ie2|5ie2]], [[5ie0|5ie0]]</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AAE3, 4CLL10, AMPBP3, At3g48990, T2J13.170 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Oxalate--CoA_ligase Oxalate--CoA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.2.1.8 6.2.1.8] </span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Oxalate--CoA_ligase Oxalate--CoA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.2.1.8 6.2.1.8] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ie3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ie3 OCA], [http://pdbe.org/5ie3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ie3 RCSB], [http://www.ebi.ac.uk/pdbsum/5ie3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ie3 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5ie3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ie3 OCA], [http://pdbe.org/5ie3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ie3 RCSB], [http://www.ebi.ac.uk/pdbsum/5ie3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ie3 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
Line 15: Line 16:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Arath]]
[[Category: Large Structures]]
[[Category: Oxalate--CoA ligase]]
[[Category: Oxalate--CoA ligase]]
[[Category: Chang, W R]]
[[Category: Chang, W R]]

Revision as of 10:14, 3 June 2020

Crystal structure of a plant enzymeCrystal structure of a plant enzyme

Structural highlights

5ie3 is a 2 chain structure with sequence from Arath. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:,
Gene:AAE3, 4CLL10, AMPBP3, At3g48990, T2J13.170 (ARATH)
Activity:Oxalate--CoA ligase, with EC number 6.2.1.8
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[4CLLA_ARATH] Oxalyl-CoA synthetase acting exclusively against oxalate. No activity with malonate, succinate, malate, acetate, formate, lactate, glycolate, glyoxylate or glutarate. Required for oxalate degradation, normal seed development and defense against oxalate-producing fungal pathogens.[1]

References

  1. ↑ Foster J, Kim HU, Nakata PA, Browse J. A previously unknown oxalyl-CoA synthetase is important for oxalate catabolism in Arabidopsis. Plant Cell. 2012 Mar;24(3):1217-29. doi: 10.1105/tpc.112.096032. Epub 2012 Mar, 23. PMID:22447686 doi:http://dx.doi.org/10.1105/tpc.112.096032

5ie3, resolution 1.90Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=5ie3&oldid=3219235"