Ribosome 3D structures: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older editNewer edit →
Michal Harel (talk | contribs)
31,761 edits
No edit summary
Michal Harel (talk | contribs)
31,761 edits
No edit summary
Line 31: Line 31:
**[[1ibk]] - Tt30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA<br />
**[[1ibk]] - Tt30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA<br />
**[[2om7]] – TtRPS2+TtRPS12+TtRPL1+ P-site tRNA+16S RRNA fragment+23S RRNA fragment<br />
**[[2om7]] – TtRPS2+TtRPS12+TtRPL1+ P-site tRNA+16S RRNA fragment+23S RRNA fragment<br />
**[[5u4j]] – EcRPS3+EcRPS4+EcRPS5 + EcRPS12 + P-site tRNA+16S RRNA +23S RRNA + mRNA + RF-2 – Cryo EM<br />
**[[5u4j]] – EcRPS3+EcRPS4+EcRPS5 + EcRPS12 + P-site tRNA+16S RRNA +23S RRNA + mRNA + RF-2 – Escherichia coli – Cryo EM<br />


*30S subunit+A-site tRNA+P-site tRNA
*30S subunit+A-site tRNA+P-site tRNA
Line 71: Line 71:
*40S ribosomal subunit  
*40S ribosomal subunit  


**[[4v5o]] - Tet40S ribosomal subunit+RACK1 – ''Tetrahymena thermophila''<br />
**[[6g4w]] - h40S ribosomal subunit + PNO1 + bystin + TSR1 + tRNA methyltransferase – Cryo-EM<br />
**[[4kzx]] - r40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM<br />
**[[4kzx]] - r40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM<br />
**[[4kzy]] - r40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM<br />
**[[4kzy]] - r40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM<br />
**[[4kzz]] - r40S ribosomal subunit+ RACK1 + EIF1A + initiator tRNA – Cryo-EM<br />  
**[[4kzz]] - r40S ribosomal subunit+ RACK1 + EIF1A + initiator tRNA – Cryo-EM<br />  
**[[4bts]] - r40S ribosomal subunit+ 18SRRNA + EIF1 + EIF1A <br />
**[[4bts]] - r40S ribosomal subunit+ 18SRRNA + EIF1 + EIF1A <br />
**[[6g4w]] - h40S ribosomal subunit + PNO1 + bystin + TSR1 + tRNA methyltransferase – Cryo-EM<br />
**[[6nd4]] - y40S ribosomal subunit – yeast - Cryo-EM<br />
**[[6fai]] - y40S ribosomal subunit + PNO1 + 20S RRNA + TSR1 + LTV1 + RIO2 – Cryo-EM<br />
**[[6fai]] - y40S ribosomal subunit + PNO1 + 20S RRNA + TSR1 + LTV1 + RIO2 – Cryo-EM<br />
**[[6eml]] - y40S ribosomal subunit + PNO1 + 20S RRNA + TSR1 + LTV1 + RIO2 + essential nuclear protein 1 – Cryo-EM<br />
**[[6eml]] - y40S ribosomal subunit + PNO1 + 20S RRNA + TSR1 + LTV1 + RIO2 + essential nuclear protein 1 – Cryo-EM<br />
**[[6rbd]] - y40S ribosomal subunit + PNO1 + 20S RRNA + TSR1 + dimethyladenosine transferase + RIO2 + essential nuclear protein 1 – Cryo-EM<br />
**[[4v5o]] - Tet40S ribosomal subunit+RACK1 – ''Tetrahymena thermophila''<br />


*50S subunit+RNA
*50S subunit+RNA


**[[2ftc]] – 50S subunit+5S RRNA+23S RRNA – bovine - Cryo_EM<br />
**[[4v7l]], [[4v7m]], [[4v8j]], [[4v8n]], [[4v9i]] - Tt50S subunit+5S RRNA+23S RRNA <br />
**[[4v7l]], [[4v7m]], [[4v8j]], [[4v8n]], [[4v9i]] - Tt50S subunit+5S RRNA+23S RRNA <br />
**[[4v6c]] - Ec50S subunit+5S RRNA+23S RRNA <br />  
**[[4v6c]] - Ec50S subunit+5S RRNA+23S RRNA <br />  
Line 95: Line 98:
**[[1vqo]] – Hm50S subunit+5S RRNA+23S RRNA+ CCPMN<br />
**[[1vqo]] – Hm50S subunit+5S RRNA+23S RRNA+ CCPMN<br />
**[[3iy9]] – 50S subunit – ''Leishmania taretolae''<br />
**[[3iy9]] – 50S subunit – ''Leishmania taretolae''<br />
**[[2ftc]] – 50S subunit+5S RRNA+23S RRNA – bovine - Cryo_EM<br />
**[[3j3v]], [[3j3w]] - Bs50S subunit+5S RRNA+23S RRNA – ''Bacillus subtilis''<br />
**[[3j3v]], [[3j3w]] - 50S subunit+5S RRNA+23S RRNA – ''Bacillus subtilis''<br />


*50S subunit + antibiotics
*50S subunit + antibiotics
Line 113: Line 115:
**[[2j28]] - Ec50S subunit+5S RRNA+23S RRNA+signal recognition particle – Cryo-EM<br />
**[[2j28]] - Ec50S subunit+5S RRNA+23S RRNA+signal recognition particle – Cryo-EM<br />
**[[1w2b]] - Hm50S subunit+5S RRNA+23S RRNA+trigger factor N-terminal<br />
**[[1w2b]] - Hm50S subunit+5S RRNA+23S RRNA+trigger factor N-terminal<br />
**[[6ppk]] - Bs50S subunit+5S RRNA+23S RRNA + ribosome biogenesis GTPase A – Cryo EM<br />


*60S subunit + various proteins
*60S subunit + various proteins


**[[4v8p]] - Tet60S subunit+ 26S RRNA+ translation initiation factor 6 <br />
**[[4v6x]] – h60S subunit + P0 + P1 + P2 – human - Cryo EM<br />
**[[2lbf]] – hP1 dimerization domain + P2 dimerization domain - NMR<br />
**[[2w1o]] – hP2 dimerization domain - NMR<br />
**[[4beh]] – hP1 + P2 - NMR<br />
**[[4v6i]] – y60S subunit + P0 + P1 + P2 – yeast - Cryo EM<br />
**[[4v6i]] – y60S subunit + P0 + P1 + P2 – yeast - Cryo EM<br />
**[[4v8t]] – y60S subunit + P0 + P1 + P2 + ARX1 - Cryo EM<br />
**[[4v8t]] – y60S subunit + P0 + P1 + P2 + ARX1 - Cryo EM<br />
Line 123: Line 129:
**[[4v7r]] – y60S subunit + 5S RRNA + 5.8S RRNA + 25S RRNA + P0<br />
**[[4v7r]] – y60S subunit + 5S RRNA + 5.8S RRNA + 25S RRNA + P0<br />
**[[5tzs]], [[5no4]] – y60S subunit processome – Cryo EM<br />
**[[5tzs]], [[5no4]] – y60S subunit processome – Cryo EM<br />
**[[5anc]], [[5anb]], [[5an9]] – 60S subunit + P0 + SbdS + EF-Tu – slime mold - Cryo EM<br />
**[[5anc]], [[5anb]], [[5an9]] – sm60S subunit + P0 + SbdS + EF-Tu – slime mold - Cryo EM<br />
**[[6qkl]] – sm60S subunit + P0 + SbdS + EIF-6 - Cryo EM<br />
**[[4v6w]] – Dm60S subunit + P0 – Drosophila melanogaster - Cryo EM<br />
**[[4v6w]] – Dm60S subunit + P0 – Drosophila melanogaster - Cryo EM<br />
**[[4v6x]] – h60S subunit + P0 + P1 + P2 – human - Cryo EM<br />
**[[4v8p]] - Tet60S subunit+ 26S RRNA+ translation initiation factor 6 <br />
**[[2lbf]] – hP1 dimerization domain + P2 dimerization domain - NMR<br />
**[[2w1o]] – hP2 dimerization domain - NMR<br />
**[[4beh]] – hP1 + P2 - NMR<br />


*70S ribosome
*70S ribosome


**[[4v4q]], [[4v9d]] - EcRibosome <br />
**[[4v61]], [[5x8r]], [[5mlc]] – sRibosome – spinach - Cryo-EM<br />
**[[4v4i]], [[4v83]], [[4v84]], [[4v4s]], [[4v4x]], [[4v4z]], [[4v90]], [[4v42]] – TtRibosome <br />
**[[4v4i]], [[4v83]], [[4v84]], [[4v4s]], [[4v4x]], [[4v4z]], [[4v90]], [[4v42]] – TtRibosome <br />
**[[4v8j]], [[4v97]] – TtRibosome ram mutation<br />
**[[4v8j]], [[4v97]] – TtRibosome ram mutation<br />
**[[4v8n]] – TtRibosome agmatidine mutation<br />
**[[4v8n]] – TtRibosome agmatidine mutation<br />
**[[4v4y]], [[4v4j]] – TtRibosome Shine-Dalgarno duplex<br />
**[[4v5m]] – TtRibosome pre-translocational – Cryo-EM<br />
**[[4v5n]] – TtRibosome post-translocational – Cryo-EM<br />
**[[4v4q]], [[4v9d]] - EcRibosome <br />
**[[4v6c]], [[4v6d]], [[4v6e]] – EcRibosome ratcheting<br />
**[[4v6c]], [[4v6d]], [[4v6e]] – EcRibosome ratcheting<br />
**[[4v69]], [[4v48]], [[4v4a]] – EcRibosome – Cryo-EM<br />
**[[4v69]], [[4v48]], [[4v4a]] – EcRibosome – Cryo-EM<br />
**[[4v6u]] – Ribosome – Pyrococcus furiosus - Cryo-EM<br />
**[[4v4y]], [[4v4j]] – TtRibosome Shine-Dalgarno duplex<br />
**[[4v4v]] – EcRibosome pre-translocational – Cryo-EM<br />
**[[4v4v]] – EcRibosome pre-translocational – Cryo-EM<br />
**[[4v5m]] – TtRibosome pre-translocational – Cryo-EM<br />
**[[4v5n]] – TtRibosome post-translocational – Cryo-EM<br />
**[[4v4w]] – EcRibosome SecM-stalled – Cryo-EM<br />
**[[4v4w]] – EcRibosome SecM-stalled – Cryo-EM<br />
**[[4v65]] – EcRibosome pre-accomodation – Cryo-EM<br />
**[[4v65]] – EcRibosome pre-accomodation – Cryo-EM<br />
**[[4v66]] – EcRibosome post-accomodation – Cryo-EM<br />
**[[4v66]] – EcRibosome post-accomodation – Cryo-EM<br />
**[[4v61]], [[5x8r]], [[5mlc]] – sRibosome – spinach - Cryo-EM<br />
**[[4v8m]] - TbRibosome – ''Trypanosoma brucei'' – Cryo-EM<br />
**[[4v8m]] - TbRibosome – Trypanosoma brucei – Cryo-EM<br />
**[[4v6u]] – Ribosome – ''Pyrococcus furiosus'' - Cryo-EM<br />


*70S ribosome complex with mRNA
*70S ribosome complex with mRNA
Line 172: Line 176:
**[[4v5e]], [[4v4r]], [[4v67]], [[4v9n]] – TtRibosome + RF-2<br />
**[[4v5e]], [[4v4r]], [[4v67]], [[4v9n]] – TtRibosome + RF-2<br />
**[[4v5j]] – TtRibosome + RF-2 + substrate analog<br />
**[[4v5j]] – TtRibosome + RF-2 + substrate analog<br />
**[[4v8o]] – TtRibosome + RF-3<br />
**[[1ml5]] – EcRibosome + RF-2 – Cryo-EM<br />
**[[1ml5]] – EcRibosome + RF-2 – Cryo-EM<br />
**[[4v89]] – EcRibosome + RF-3<br />
**[[4v89]] – EcRibosome + RF-3<br />
**[[4v85]] – EcRibosome + RF-3 + mRNA + antibiotic<br />
**[[4v85]] – EcRibosome + RF-3 + mRNA + antibiotic<br />
**[[4v8o]] – TtRibosome + RF-3<br />


*70S ribosome complex with various proteins
*70S ribosome complex with various proteins
Line 181: Line 185:
**[[4v5b]] – EcRibosome + PDF-binding helix<br />
**[[4v5b]] – EcRibosome + PDF-binding helix<br />
**[[4v5h]] – EcRibosome + Tnac leader peptide<br />
**[[4v5h]] – EcRibosome + Tnac leader peptide<br />
**[[4v5k]] – TtRibosome + colicin E3<br />
**[[4v6v]] - EcRibosome+ tetracycline resistance protein + mRNA + P-tRNA – Cryo-EM<br />
**[[4v6v]] - EcRibosome+ tetracycline resistance protein + mRNA + P-tRNA – Cryo-EM<br />
**[[4v7j]], [[4v7k]] – TtRibosome + toxin RelE<br />
**[[4v6m]] – EcRibosome + SecYE – Cryo-EM<br />
**[[4v6m]] – EcRibosome + SecYE – Cryo-EM<br />
**[[4v4g]] – EcRibosome + protein Y – Cryo-EM<br />
**[[4v4g]] – EcRibosome + protein Y – Cryo-EM<br />
Line 191: Line 193:
**[[4v8i]] - TtRibosome + ribosome-associated inhibitor<br />
**[[4v8i]] - TtRibosome + ribosome-associated inhibitor<br />
**[[4v95]] – TtRibosome + YAEJ<br />
**[[4v95]] – TtRibosome + YAEJ<br />
**[[4v5k]] – TtRibosome + colicin E3<br />
**[[4v7j]], [[4v7k]] – TtRibosome + toxin RelE<br />


*70S ribosome complex with elongation factor
*70S ribosome complex with elongation factor


**[[4v5f]], [[4v8u]], [[4v9h]] – TtRibosome + elongation factor G<br />
**[[4v9o]] – EcRibosome + elongation factor G<br />
**[[4v9o]] – EcRibosome + elongation factor G<br />
**[[4v9p]] – EcRibosome + antibiotic + elongation factor G<br />
**[[4v9p]] – EcRibosome + antibiotic + elongation factor G<br />
**[[4v47]] – EcRibosome + elongation factor G – Cryo-EM<br />
**[[4v47]] – EcRibosome + elongation factor G – Cryo-EM<br />
**[[4v6t]] – EcRibosome + elongation factor G + tRNA-SmpB – Cryo-EM<br />
**[[4v6t]] – EcRibosome + elongation factor G + tRNA-SmpB – Cryo-EM<br />
**[[4v6a]] – TtRibosome + elongation factor P<br />
**[[4v6k]], [[4v6l]] – EcRibosome + elongation factor Tu <br />
**[[4v6k]], [[4v6l]] – EcRibosome + elongation factor Tu <br />
**[[4v5l]] – EcRibosome + elongation factor Tu + tRNA<br />
**[[4v5l]] – EcRibosome + elongation factor Tu + tRNA<br />
**[[4v5f]], [[4v8u]], [[4v9h]] – TtRibosome + elongation factor G<br />
**[[4v6a]] – TtRibosome + elongation factor P<br />
**[[4v5g]] – TtRibosome + elongation factor Tu<br />
**[[4v5g]] – TtRibosome + elongation factor Tu<br />
**[[4v8q]] – TtRibosome + antibiotic + elongation factor Tu<br />
**[[4v8q]] – TtRibosome + antibiotic + elongation factor Tu<br />
Line 211: Line 215:
*80S ribosome  
*80S ribosome  


**[[4v6x]] – hRibosome - Cryo-EM<br />
**[[4v5z]] -  dRibosome – Cryo-EM <br />
**[[3j0l]], [[3j0o]], [[3j0p]], [[3j0q]] - rRibosome+ mRNA – Cryo-EM <br />
**[[4v6w]] - DmRibosome + elongation factor 2 + guanine nucleotide-binding protein – Cryo-EM<br />
**[[4v6w]] - DmRibosome + elongation factor 2 + guanine nucleotide-binding protein – Cryo-EM<br />
**[[4v7e]] – Ribosome – wheat - Cryo-EM<br />
**[[4v7r]], [[4v88]] – yRibosome  <br />
**[[4v7r]], [[4v88]] – yRibosome  <br />
**[[4v6i]] – yRibosome - Cryo-EM<br />
**[[4v6i]] – yRibosome - Cryo-EM<br />
**[[4v4b]] – yRibosome + elongation factor 2 + antifungal - Cryo-EM<br />
**[[4v4b]] – yRibosome + elongation factor 2 + antifungal - Cryo-EM<br />
**[[4v7e]] – Ribosome – wheat - Cryo-EM<br />
**[[4v6x]] – hRibosome - Cryo-EM<br />
**[[4v5z]] -  dRibosome – Cryo-EM <br />
**[[3j0l]], [[3j0o]], [[3j0p]], [[3j0q]] - rRibosome+ mRNA – Cryo-EM <br />
**[[4v7h]] - TlRibosome+P-site tRNA – ''Thermomyces lanuginosus''<br />
**[[4v7h]] - TlRibosome+P-site tRNA – ''Thermomyces lanuginosus''<br />


Revision as of 11:44, 19 December 2019

Updated on 19-December-2019 For a general description of the protein see Ribosome

  • 30S subunit +tRNA+mRNA
    • 3t1h, 3t1y - Tt30S ribosomal subunit+16S RRNA+tRNA Lys +mRNA
    • 4v8j - Tt30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA
    • 1xnq, 1xnr - Tt30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA
    • 4gkj, 4gkk - Tt30S ribosomal subunit +16S RRNA +THX + mRNA + tRNA Met
    • 4jv5, 4jya, 4k0k - Tt30S ribosomal subunit +16S RRNA +THX + mRNA + ASL-tRNA
  • 30S subunit +A-site tRNA
    • 2uxd, 2uxc - Tt30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA
    • 1n32, 1n33 - Tt30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA
    • 1n34 - Tt30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA
    • 1xmo, 1xmq]] - Tt30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA
    • 2uxb - Tt30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA
  • 30S subunit+P-site tRNA
    • 1ibk - Tt30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA
    • 2om7 – TtRPS2+TtRPS12+TtRPL1+ P-site tRNA+16S RRNA fragment+23S RRNA fragment
    • 5u4j – EcRPS3+EcRPS4+EcRPS5 + EcRPS12 + P-site tRNA+16S RRNA +23S RRNA + mRNA + RF-2 – Escherichia coli – Cryo EM
  • 30S subunit+A-site tRNA+P-site tRNA
    • 1ibl, 1ibm - Tt30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA
  • 30S subunit+A-site tRNA+P-site tRNA+E-site tRNA
    • 1jgo, 1jgp, 1jgq - Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA
  • 30S subunit + antibiotics
  • 30S subunit + ribosome recycling factor
    • 4v9d - Ec30S ribosomal subunit+16S RRNA+ribosome recycling factor + mRNA + tRNA - Escherichia coli
  • 30S subunit + elongation factor
    • 4v90 - Tt30S ribosomal subunit+THX+RNA +16S RRNA+elongation factor G
  • 30S subunit + translation initiation factor
    • 1hr0 - Tt30S ribosomal subunit+THX+IF+16S RRNA
    • 1i96 - Tt30S ribosomal subunit+THX+IF3+16S RRNA
  • 30S subunit + various proteins
    • 1x18 – TtRPS2+TtRPS7+TtRPS11+TtRPS18+GTP-binding protein ERA+RNA fragments
    • 2ykr - EcRPS2 + 16S RRNA + GMPPNP + GTPase RSGA
    • 4a2i - EcRPS2 + 16S RRNA + GTPase RSGA – Cryo EM
    • 4adv - EcRPS2 + 16S RRNA + methyltransferase – Cryo EM
    • 5uz4, 5no3, 5no2 - Ec30S ribosomal subunit+ BS6 + US7 + GTPase RsgA +16S RRNA – Cryo EM
    • 6dzk - 30S ribosomal subunit + HPF +16S RRNA – Mycobacterium smegmatis - Cryo EM
  • 40S ribosomal subunit
    • 6g4w - h40S ribosomal subunit + PNO1 + bystin + TSR1 + tRNA methyltransferase – Cryo-EM
    • 4kzx - r40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM
    • 4kzy - r40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM
    • 4kzz - r40S ribosomal subunit+ RACK1 + EIF1A + initiator tRNA – Cryo-EM
    • 4bts - r40S ribosomal subunit+ 18SRRNA + EIF1 + EIF1A
    • 6nd4 - y40S ribosomal subunit – yeast - Cryo-EM
    • 6fai - y40S ribosomal subunit + PNO1 + 20S RRNA + TSR1 + LTV1 + RIO2 – Cryo-EM
    • 6eml - y40S ribosomal subunit + PNO1 + 20S RRNA + TSR1 + LTV1 + RIO2 + essential nuclear protein 1 – Cryo-EM
    • 6rbd - y40S ribosomal subunit + PNO1 + 20S RRNA + TSR1 + dimethyladenosine transferase + RIO2 + essential nuclear protein 1 – Cryo-EM
    • 4v5o - Tet40S ribosomal subunit+RACK1 – Tetrahymena thermophila
  • 50S subunit+RNA
    • 2ftc – 50S subunit+5S RRNA+23S RRNA – bovine - Cryo_EM
    • 4v7l, 4v7m, 4v8j, 4v8n, 4v9i - Tt50S subunit+5S RRNA+23S RRNA
    • 4v6c - Ec50S subunit+5S RRNA+23S RRNA
    • 2zjq, 2zjr, 1nkw - Dr50S subunit+5S RRNA+23S RRNA – Deinococcus radiodurans
    • 2qa4, 3cc2, 1s72, 4v9f, 1kqs, 1qvg, 1jj2, 1ffk - Hm50S subunit+5S RRNA+23S RRNA – Haloarcula marismortui
    • 3cc7, 3cce, 3ccj, 3ccl, 3ccm, 3ccq, 3ccr, 3ccs, 3ccu, 3ccv - Hm50S subunit+5S RRNA+23S RRNA (mutant)
    • 1yj9 - Hm50S subunit (mutant)+5S RRNA+23S RRNA
    • 1qvf- Hm50S subunit+5S RRNA+23S RRNA + deacylated tRNA minihelix
    • 1q86 - Hm50S subunit+5S RRNA+23S RRNA+CCA-Phe-caproic acid-biotin
    • 3cma, 3cme, 1vq8, 1vq9, 1m90 - Hm50S subunit+5S RRNA+23S RRNA+CCA+CCA-Phe-CAP-BIO
    • 1vq4, 1vq5, 1vq7, 1vql, 1vqm, 1vqp – Hm50S subunit+5S RRNA+23S RRNA+transition state analog
    • 1vq6, 1vqk, 1vqn – Hm50S subunit+5S RRNA+23S RRNA+ c-hpmn+CCA-Phe-caproic acid-biotin
    • 1vqo – Hm50S subunit+5S RRNA+23S RRNA+ CCPMN
    • 3iy9 – 50S subunit – Leishmania taretolae
    • 3j3v, 3j3w - Bs50S subunit+5S RRNA+23S RRNA – Bacillus subtilis
  • 50S subunit + antibiotics
  • 50S subunit + ribosome releasing factor (RRF)
    • 2rdo - Ec50S subunit+5S RRNA+23S RRNA+EF-G+RRF – Cryo-EM
    • 3j0d - Tt50S subunit+5S RRNA+23S RRNA+RRF – Cryo-EM
  • 50S subunit + various proteins
    • 2j28 - Ec50S subunit+5S RRNA+23S RRNA+signal recognition particle – Cryo-EM
    • 1w2b - Hm50S subunit+5S RRNA+23S RRNA+trigger factor N-terminal
    • 6ppk - Bs50S subunit+5S RRNA+23S RRNA + ribosome biogenesis GTPase A – Cryo EM
  • 60S subunit + various proteins
    • 4v6x – h60S subunit + P0 + P1 + P2 – human - Cryo EM
    • 2lbf – hP1 dimerization domain + P2 dimerization domain - NMR
    • 2w1o – hP2 dimerization domain - NMR
    • 4beh – hP1 + P2 - NMR
    • 4v6i – y60S subunit + P0 + P1 + P2 – yeast - Cryo EM
    • 4v8t – y60S subunit + P0 + P1 + P2 + ARX1 - Cryo EM
    • 6em5, 6em4, 6em3 – y60S ribosomal subunit + BRX1 + 5.8S RRNA + 25S RNA + CIC1 + ERB1 + HAS1 + MRT4 + NIP7 + ribosome biogenesis proteins + EIF-6 + nucleolar proteins – Cryo-EM
    • 6cb1, 6c0f, 5z3g – y60S ribosomal subunit + 5.8S RRNA + 25S RNA + CIC1 + HAS1 + MRT4 + NIP7 + ribosome biogenesis proteins + RNA-processing protein + nucleolar proteins + pescadillo homolog – Cryo-EM
    • 4v7r – y60S subunit + 5S RRNA + 5.8S RRNA + 25S RRNA + P0
    • 5tzs, 5no4 – y60S subunit processome – Cryo EM
    • 5anc, 5anb, 5an9 – sm60S subunit + P0 + SbdS + EF-Tu – slime mold - Cryo EM
    • 6qkl – sm60S subunit + P0 + SbdS + EIF-6 - Cryo EM
    • 4v6w – Dm60S subunit + P0 – Drosophila melanogaster - Cryo EM
    • 4v8p - Tet60S subunit+ 26S RRNA+ translation initiation factor 6
  • 70S ribosome
    • 4v61, 5x8r, 5mlc – sRibosome – spinach - Cryo-EM
    • 4v4i, 4v83, 4v84, 4v4s, 4v4x, 4v4z, 4v90, 4v42 – TtRibosome
    • 4v8j, 4v97 – TtRibosome ram mutation
    • 4v8n – TtRibosome agmatidine mutation
    • 4v4y, 4v4j – TtRibosome Shine-Dalgarno duplex
    • 4v5m – TtRibosome pre-translocational – Cryo-EM
    • 4v5n – TtRibosome post-translocational – Cryo-EM
    • 4v4q, 4v9d - EcRibosome
    • 4v6c, 4v6d, 4v6e – EcRibosome ratcheting
    • 4v69, 4v48, 4v4a – EcRibosome – Cryo-EM
    • 4v4v – EcRibosome pre-translocational – Cryo-EM
    • 4v4w – EcRibosome SecM-stalled – Cryo-EM
    • 4v65 – EcRibosome pre-accomodation – Cryo-EM
    • 4v66 – EcRibosome post-accomodation – Cryo-EM
    • 4v8m - TbRibosome – Trypanosoma brucei – Cryo-EM
    • 4v6u – Ribosome – Pyrococcus furiosus - Cryo-EM
  • 70S ribosome complex with mRNA
  • 70S ribosome complex with antibiotic
  • 70S ribosome complex with release factor
    • 4v5a – TtRibosome + RRF
    • 4v63, 4v7p – TtRibosome + RF-1
    • 4v5e, 4v4r, 4v67, 4v9n – TtRibosome + RF-2
    • 4v5j – TtRibosome + RF-2 + substrate analog
    • 4v8o – TtRibosome + RF-3
    • 1ml5 – EcRibosome + RF-2 – Cryo-EM
    • 4v89 – EcRibosome + RF-3
    • 4v85 – EcRibosome + RF-3 + mRNA + antibiotic
  • 70S ribosome complex with various proteins
    • 4v5b – EcRibosome + PDF-binding helix
    • 4v5h – EcRibosome + Tnac leader peptide
    • 4v6v - EcRibosome+ tetracycline resistance protein + mRNA + P-tRNA – Cryo-EM
    • 4v6m – EcRibosome + SecYE – Cryo-EM
    • 4v4g – EcRibosome + protein Y – Cryo-EM
    • 4v7i – EcRibosome +preprotein translocase – Cryo-EM
    • 4v49 - EcRibosome +general stress protein Ctc – Cryo-EM
    • 4v8g, 4v8h – TtRibosome + modulation factor
    • 4v8i - TtRibosome + ribosome-associated inhibitor
    • 4v95 – TtRibosome + YAEJ
    • 4v5k – TtRibosome + colicin E3
    • 4v7j, 4v7k – TtRibosome + toxin RelE
  • 70S ribosome complex with elongation factor
    • 4v9o – EcRibosome + elongation factor G
    • 4v9p – EcRibosome + antibiotic + elongation factor G
    • 4v47 – EcRibosome + elongation factor G – Cryo-EM
    • 4v6t – EcRibosome + elongation factor G + tRNA-SmpB – Cryo-EM
    • 4v6k, 4v6l – EcRibosome + elongation factor Tu
    • 4v5l – EcRibosome + elongation factor Tu + tRNA
    • 4v5f, 4v8u, 4v9h – TtRibosome + elongation factor G
    • 4v6a – TtRibosome + elongation factor P
    • 4v5g – TtRibosome + elongation factor Tu
    • 4v8q – TtRibosome + antibiotic + elongation factor Tu
    • 4v68 – TtRibosome + antibiotic + elongation factor Tu – Cryo-EM
    • 4v5p, 4v5q, 4v5r, 4v5s – TtRibosome + elongation factor Tu + tRNA-Trp
    • 4v9j, 4v9k, 4v9l, 4v9m – TtRibosome + elongation factor G + tRNA
    • 4v9l – TtRibosome + elongation factor G + antibiotic + tRNA
  • 80S ribosome
    • 4v6x – hRibosome - Cryo-EM
    • 4v5z - dRibosome – Cryo-EM
    • 3j0l, 3j0o, 3j0p, 3j0q - rRibosome+ mRNA – Cryo-EM
    • 4v6w - DmRibosome + elongation factor 2 + guanine nucleotide-binding protein – Cryo-EM
    • 4v7e – Ribosome – wheat - Cryo-EM
    • 4v7r, 4v88 – yRibosome
    • 4v6i – yRibosome - Cryo-EM
    • 4v4b – yRibosome + elongation factor 2 + antifungal - Cryo-EM
    • 4v7h - TlRibosome+P-site tRNA – Thermomyces lanuginosus
  • Mitochondrial ribosome (mitoribosome)
    • 5aj4 - p28S small and 39S large subunit of the mammalian mitoribosome in a 55S complex - pig
    • 4v19, 4v1a- p39S large subunit of the mammalian mitoribosome
    • 5aj3 - p28S small subunit of the mammalian mitoribosome
    • 4ce4 - p39S large subunit of the mammalian mitoribosome
    • 3j6b - y54S large subunit of the mitoribosome
    • 3jd5 - 28S small subunit of the mammalian mitoribosome - bovine
  • 90S pre-ribosome
    • 5jpq – pre-Ribosome – Chaetomium thermophilum - Cryo-EM

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Jaime Prilusky, Alexander Berchansky, Wayne Decatur, Michal Harel, Joel L. Sussman
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=Ribosome_3D_structures&oldid=3131154"