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[[ | ==F1-ATPase in which all three catalytic sites contain bound nucleotide, with magnesium ion released in the Empty site== | ||
<StructureSection load='4asu' size='340' side='right' caption='[[4asu]], [[Resolution|resolution]] 2.60Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[4asu]] is a 9 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ASU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ASU FirstGlance]. <br> | |||
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br> | |||
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1bmf|1bmf]], [[1cow|1cow]], [[1e1q|1e1q]], [[1e1r|1e1r]], [[1e79|1e79]], [[1efr|1efr]], [[1h8e|1h8e]], [[1h8h|1h8h]], [[1nbm|1nbm]], [[1ohh|1ohh]], [[1qo1|1qo1]], [[1w0j|1w0j]], [[1w0k|1w0k]], [[2ck3|2ck3]], [[2jdi|2jdi]], [[2jiz|2jiz]], [[2jj1|2jj1]], [[2jj2|2jj2]], [[2v7q|2v7q]], [[2w6e|2w6e]], [[2w6f|2w6f]], [[2w6g|2w6g]], [[2w6h|2w6h]], [[2w6i|2w6i]], [[2w6j|2w6j]], [[2wss|2wss]], [[2xnd|2xnd]]</td></tr> | |||
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr> | |||
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4asu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4asu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4asu RCSB], [http://www.ebi.ac.uk/pdbsum/4asu PDBsum]</span></td></tr> | |||
<table> | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
The molecular description of the mechanism of F(1)-ATPase is based mainly on high-resolution structures of the enzyme from mitochondria, coupled with direct observations of rotation in bacterial enzymes. During hydrolysis of ATP, the rotor turns counterclockwise (as viewed from the membrane domain of the intact enzyme) in 120 degrees steps. Because the rotor is asymmetric, at any moment the three catalytic sites are at different points in the catalytic cycle. In a "ground-state" structure of the bovine enzyme, one site (beta(E)) is devoid of nucleotide and represents a state that has released the products of ATP hydrolysis. A second site (beta(TP)) has bound the substrate, magnesium. ATP, in a precatalytic state, and in the third site (beta(DP)), the substrate is about to undergo hydrolysis. Three successive 120 degrees turns of the rotor interconvert the sites through these three states, hydrolyzing three ATP molecules, releasing the products and leaving the enzyme with two bound nucleotides. A transition-state analog structure, F(1)-TS, displays intermediate states between those observed in the ground state. For example, in the beta(DP)-site of F(1)-TS, the terminal phosphate of an ATP molecule is undergoing in-line nucleophilic attack by a water molecule. As described here, we have captured another intermediate in the catalytic cycle, which helps to define the order of substrate release. In this structure, the beta(E)-site is occupied by the product ADP, but without a magnesium ion or phosphate, providing evidence that the nucleotide is the last of the products of ATP hydrolysis to be released. | |||
Structural evidence of a new catalytic intermediate in the pathway of ATP hydrolysis by F1-ATPase from bovine heart mitochondria.,Rees DM, Montgomery MG, Leslie AG, Walker JE Proc Natl Acad Sci U S A. 2012 Jun 25. PMID:22733764<ref>PMID:22733764</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
</div> | |||
==See Also== | |||
*[[ATP synthase|ATP synthase]] | |||
== | *[[ATPase|ATPase]] | ||
[[ | == References == | ||
<references/> | |||
== | __TOC__ | ||
< | </StructureSection> | ||
[[Category: Bos taurus]] | [[Category: Bos taurus]] | ||
[[Category: Leslie, A G.W.]] | [[Category: Leslie, A G.W.]] | ||
Revision as of 10:49, 5 June 2014
F1-ATPase in which all three catalytic sites contain bound nucleotide, with magnesium ion released in the Empty siteF1-ATPase in which all three catalytic sites contain bound nucleotide, with magnesium ion released in the Empty site
Structural highlights
Publication Abstract from PubMedThe molecular description of the mechanism of F(1)-ATPase is based mainly on high-resolution structures of the enzyme from mitochondria, coupled with direct observations of rotation in bacterial enzymes. During hydrolysis of ATP, the rotor turns counterclockwise (as viewed from the membrane domain of the intact enzyme) in 120 degrees steps. Because the rotor is asymmetric, at any moment the three catalytic sites are at different points in the catalytic cycle. In a "ground-state" structure of the bovine enzyme, one site (beta(E)) is devoid of nucleotide and represents a state that has released the products of ATP hydrolysis. A second site (beta(TP)) has bound the substrate, magnesium. ATP, in a precatalytic state, and in the third site (beta(DP)), the substrate is about to undergo hydrolysis. Three successive 120 degrees turns of the rotor interconvert the sites through these three states, hydrolyzing three ATP molecules, releasing the products and leaving the enzyme with two bound nucleotides. A transition-state analog structure, F(1)-TS, displays intermediate states between those observed in the ground state. For example, in the beta(DP)-site of F(1)-TS, the terminal phosphate of an ATP molecule is undergoing in-line nucleophilic attack by a water molecule. As described here, we have captured another intermediate in the catalytic cycle, which helps to define the order of substrate release. In this structure, the beta(E)-site is occupied by the product ADP, but without a magnesium ion or phosphate, providing evidence that the nucleotide is the last of the products of ATP hydrolysis to be released. Structural evidence of a new catalytic intermediate in the pathway of ATP hydrolysis by F1-ATPase from bovine heart mitochondria.,Rees DM, Montgomery MG, Leslie AG, Walker JE Proc Natl Acad Sci U S A. 2012 Jun 25. PMID:22733764[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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