1mj7: Difference between revisions

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<StructureSection load='1mj7' size='340' side='right'caption='[[1mj7]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
<StructureSection load='1mj7' size='340' side='right'caption='[[1mj7]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1mj7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MJ7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MJ7 FirstGlance]. <br>
<table><tr><td colspan='2'>[[1mj7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MJ7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MJ7 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HAL:N-{[2-({[1-(4-CARBOXYBUTANOYL)AMINO]-2-PHENYLETHYL}-HYDROXYPHOSPHINYL)OXY]ACETYL}-2-PHENYLETHYLAMINE'>HAL</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1mie|1mie]], [[1mh5|1mh5]], [[1mj8|1mj8]], [[1mjj|1mjj]], [[1mju|1mju]]</div></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HAL:N-{[2-({[1-(4-CARBOXYBUTANOYL)AMINO]-2-PHENYLETHYL}-HYDROXYPHOSPHINYL)OXY]ACETYL}-2-PHENYLETHYLAMINE'>HAL</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mj7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mj7 OCA], [https://pdbe.org/1mj7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mj7 RCSB], [https://www.ebi.ac.uk/pdbsum/1mj7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mj7 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mj7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mj7 OCA], [https://pdbe.org/1mj7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mj7 RCSB], [https://www.ebi.ac.uk/pdbsum/1mj7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mj7 ProSAT]</span></td></tr>
</table>
</table>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mj7 ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mj7 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The crystal structures of four related Fab fragments of a family of catalytic antibodies displaying differential levels of esterase activity have been solved in the presence and in the absence of the transition-state analogue (TSA) that was used to elicit the immune response. The electron density maps show that the TSA conformation is essentially identical, with limited changes on hapten binding. Interactions with the TSA explain the specificity for the D rather than the L-isomer of the substrate. Differences in the residues in the hapten-binding pocket, which increase hydrophobicity, appear to correlate with an increase in the affinity of the antibodies for their substrate. Analysis of the structures at the active site reveals a network of conserved hydrogen bond contacts between the TSA and the antibodies, and points to a critical role of two conserved residues, HisL91 and LysH95, in catalysis. However, these two key residues are set into very different contexts in their respective structures, with an apparent direct correlation between the catalytic power of the antibodies and the complexity of their interactions with the rest of the protein. This suggests that the catalytic efficiency may be controlled by contacts arising from a second sphere of residues at the periphery of the active site.
High-resolution crystal structure of the Fab-fragments of a family of mouse catalytic antibodies with esterase activity.,Ruzheinikov SN, Muranova TA, Sedelnikova SE, Partridge LJ, Blackburn GM, Murray IA, Kakinuma H, Takahashi-Ando N, Shimazaki K, Sun J, Nishi Y, Rice DW J Mol Biol. 2003 Sep 12;332(2):423-35. PMID:12948492<ref>PMID:12948492</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 1mj7" style="background-color:#fffaf0;"></div>


==See Also==
==See Also==
*[[Adaptin 3D structures|Adaptin 3D structures]]
*[[Adaptin 3D structures|Adaptin 3D structures]]
*[[Monoclonal Antibodies 3D structures|Monoclonal Antibodies 3D structures]]
*[[Monoclonal Antibodies 3D structures|Monoclonal Antibodies 3D structures]]
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Lk3 transgenic mice]]
[[Category: Mus musculus]]
[[Category: Blackburn, G M]]
[[Category: Blackburn GM]]
[[Category: Kakinuma, H]]
[[Category: Kakinuma H]]
[[Category: Muranova, T A]]
[[Category: Muranova TA]]
[[Category: Murray, I A]]
[[Category: Murray IA]]
[[Category: Nishi, Y]]
[[Category: Nishi Y]]
[[Category: Partridge, L J]]
[[Category: Partridge LJ]]
[[Category: Rice, D W]]
[[Category: Rice DW]]
[[Category: Ruzheinikov, S N]]
[[Category: Ruzheinikov SN]]
[[Category: Sedelnikova, S E]]
[[Category: Sedelnikova SE]]
[[Category: Shimazaki, K]]
[[Category: Shimazaki K]]
[[Category: Sun, J]]
[[Category: Sun J]]
[[Category: Takashi, N]]
[[Category: Takashi N]]
[[Category: Catalytic antibody]]
[[Category: Ester hydrolysis]]
[[Category: Esterolytic]]
[[Category: Fab]]
[[Category: Immune system]]
[[Category: Immunoglobulin]]
[[Category: Tsa]]

Revision as of 11:37, 10 April 2024

Crystal Structure Of The Complex Of The Fab fragment of Esterolytic Antibody MS5-393 and A Transition-State AnalogCrystal Structure Of The Complex Of The Fab fragment of Esterolytic Antibody MS5-393 and A Transition-State Analog

Structural highlights

1mj7 is a 2 chain structure with sequence from Mus musculus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.25Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1mj7, resolution 2.25Å

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