3n4f: Difference between revisions

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==CRYSTAL STRUCTURE OF Mandelate racemase/muconate lactonizing protein from Geobacillus sp. Y412MC10==
==CRYSTAL STRUCTURE OF Mandelate racemase/muconate lactonizing protein from Geobacillus sp. Y412MC10==
<StructureSection load='3n4f' size='340' side='right' caption='[[3n4f]], [[Resolution|resolution]] 1.88&Aring;' scene=''>
<StructureSection load='3n4f' size='340' side='right'caption='[[3n4f]], [[Resolution|resolution]] 1.88&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3n4f]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Geos4 Geos4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N4F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3N4F FirstGlance]. <br>
<table><tr><td colspan='2'>[[3n4f]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Paenibacillus_sp._Y412MC10 Paenibacillus sp. Y412MC10]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N4F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3N4F FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.88&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">192811615, GYMC10_3367 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=481743 GEOS4])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3n4f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n4f OCA], [https://pdbe.org/3n4f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3n4f RCSB], [https://www.ebi.ac.uk/pdbsum/3n4f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3n4f ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3n4f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n4f OCA], [http://pdbe.org/3n4f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3n4f RCSB], [http://www.ebi.ac.uk/pdbsum/3n4f PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3n4f ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/D3EID5_GEOS4 D3EID5_GEOS4]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n4/3n4f_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n4/3n4f_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3n4f ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3n4f ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
==See Also==
*[[Mandelate racemase|Mandelate racemase]]
*[[Mandelate racemase/muconate lactonizing enzyme 3D structures|Mandelate racemase/muconate lactonizing enzyme 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Geos4]]
[[Category: Large Structures]]
[[Category: Almo, S C]]
[[Category: Paenibacillus sp. Y412MC10]]
[[Category: Burley, S K]]
[[Category: Almo SC]]
[[Category: Malashkevich, V N]]
[[Category: Burley SK]]
[[Category: Structural genomic]]
[[Category: Malashkevich VN]]
[[Category: Sauder, J M]]
[[Category: Sauder JM]]
[[Category: Toro, R]]
[[Category: Toro R]]
[[Category: Enolase]]
[[Category: Isomerase]]
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
[[Category: PSI, Protein structure initiative]]

Latest revision as of 13:12, 6 November 2024

CRYSTAL STRUCTURE OF Mandelate racemase/muconate lactonizing protein from Geobacillus sp. Y412MC10CRYSTAL STRUCTURE OF Mandelate racemase/muconate lactonizing protein from Geobacillus sp. Y412MC10

Structural highlights

3n4f is a 4 chain structure with sequence from Paenibacillus sp. Y412MC10. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.88Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

D3EID5_GEOS4

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

3n4f, resolution 1.88Å

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OCA