Proteopedia

User:Michael Strong/H1N1/HA: Difference between revisions

← Older edit
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[User:Michael_Strong|home]] <font color="blue">•</font>  [[User:Michael_Strong/H1N1|H1N1]] <font color="blue">•</font>  [[User:Michael_Strong/H1N1/PB2|PB2]]<font color="blue">•</font> [[User:Michael_Strong/H1N1/PB1|PB1]]<font color="blue">•</font>  [[User:Michael_Strong/H1N1/PA|PA]]  <font color="blue">•</font> [[User:Michael_Strong/H1N1/HA|HA]] <font color="blue">•</font>  [[User:Michael_Strong/H1N1/NP|NP]] <font color="blue">•</font>  [[User:Michael_Strong/H1N1/NA|NA]] <font color="blue">•</font>  [[User:Michael_Strong/H1N1/MP|MP]] <font color="blue">•</font>  [[User:Michael_Strong/H1N1/NS|NS]]  
[[User:Michael_Strong|home]] <font color="blue">•</font>  [[User:Michael_Strong/H1N1|H1N1]] <font color="blue">•</font>  [[User:Michael_Strong/H1N1/PB2|PB2]]<font color="blue">•</font> [[User:Michael_Strong/H1N1/PB1|PB1]]<font color="blue">•</font>  [[User:Michael_Strong/H1N1/PA|PA]]  <font color="blue">•</font> [[User:Michael_Strong/H1N1/HA|HA]] <font color="blue">•</font>  [[User:Michael_Strong/H1N1/NP|NP]] <font color="blue">•</font>  [[User:Michael_Strong/H1N1/NA|NA]] <font color="blue">•</font>  [[User:Michael_Strong/H1N1/MP|MP]] <font color="blue">•</font>  [[User:Michael_Strong/H1N1/NS|NS]]  
== Protein Structural Homolgy Model  ==
<applet load='MSHA2.pdb' size='300' frame='true' align='center' caption='HA Homology Model, Mexico Strain, [http://www.ncbi.nlm.nih.gov/nuccore/FJ998208 A/Mexico/InDRE4487/2009 HA], residues 16-341, 83% sequence identity to pdp template [http://proteopedia.org/wiki/index.php/3gbn 3gbn]' scene ='User:Michael_Strong/H1N1/HA/MSA/1/1'/>
== Sequence Polymorphisms ==


{| class="wikitable"
{| class="wikitable"
Line 26: Line 32:
|gi|229536049_A/Arizona/02/2009
|gi|229536049_A/Arizona/02/2009
|1
|1
|<scene name='User:Michael_Strong/H1N1/HA/MSA/48/1'>48</scene>
|----
|----
|HA
|HA
Line 31: Line 38:
|gi|229535997_A/South_Carolina/
|gi|229535997_A/South_Carolina/
|2
|2
|<scene name='User:Michael_Strong/H1N1/HA/MSA/49/1'>49</scene>
|----
|----
|HA
|HA
Line 36: Line 44:
|gi|229598877_A/Ohio/07/2009
|gi|229598877_A/Ohio/07/2009
|1
|1
|<scene name='User:Michael_Strong/H1N1/HA/MSA/96/1'>96</scene>
|----
|----
|HA
|HA
Line 41: Line 50:
|gi|229535949_A/California/04/2
|gi|229535949_A/California/04/2
|5
|5
|<scene name='User:Michael_Strong/H1N1/HA/MSA/100/1'>100</scene>
|----
|----
|HA
|HA
Line 46: Line 56:
|gi|229892708_A/Canada-AB/RV153
|gi|229892708_A/Canada-AB/RV153
|1
|1
|<scene name='User:Michael_Strong/H1N1/HA/MSA/104/1'>104</scene>
|----
|----
|HA
|HA
Line 51: Line 62:
|gi|229598896_A/Texas/15/2009
|gi|229598896_A/Texas/15/2009
|2
|2
|<scene name='User:Michael_Strong/H1N1/HA/MSA/125/1'>125</scene>
|----
|----
|HA
|HA
Line 56: Line 68:
|gi|229536088_A/Indiana/09/2009
|gi|229536088_A/Indiana/09/2009
|1
|1
|<scene name='User:Michael_Strong/H1N1/HA/MSA/149/1'>149</scene>
|----
|----
|HA
|HA
Line 61: Line 74:
|gi|229535949_A/California/04/2
|gi|229535949_A/California/04/2
|2
|2
|<scene name='User:Michael_Strong/H1N1/HA/MSA/214/1'>214</scene>
|----
|----
|HA
|HA
Line 66: Line 80:
|gi|237624327_A/swine/Alberta/O
|gi|237624327_A/swine/Alberta/O
|1
|1
|<scene name='User:Michael_Strong/H1N1/HA/MSA/215/1'>215</scene>
|----
|----
|HA
|HA
Line 71: Line 86:
|gi|229396494_A/Ohio/07/2009
|gi|229396494_A/Ohio/07/2009
|21
|21
|<scene name='User:Michael_Strong/H1N1/HA/MSA/220/1'>220</scene>
|----
|----
|HA
|HA
Line 76: Line 92:
|gi|229598896_A/Texas/15/2009
|gi|229598896_A/Texas/15/2009
|1
|1
|<scene name='User:Michael_Strong/H1N1/HA/MSA/227/1'>227</scene>
|----
|----
|HA
|HA
Line 81: Line 98:
|gi|229892706A/Mexico/InDRE4114
|gi|229892706A/Mexico/InDRE4114
|1
|1
|<scene name='User:Michael_Strong/H1N1/HA/MSA/239/2'>239</scene>
|----
|----
|HA
|HA
Line 86: Line 104:
|gi|229535997_A/South_Carolina/
|gi|229535997_A/South_Carolina/
|2
|2
|<scene name='User:Michael_Strong/H1N1/HA/MSA/291/1'>291</scene>
|----
|----
|HA
|HA
Line 91: Line 110:
|gi|229783398_A/New_York/1682/2
|gi|229783398_A/New_York/1682/2
|1
|1
|<scene name='User:Michael_Strong/H1N1/HA/MSA/293/2'>293</scene>
|----
|----
|HA
|HA
Line 96: Line 116:
|gi|229535949_A/California/04/2
|gi|229535949_A/California/04/2
|5
|5
|<scene name='User:Michael_Strong/H1N1/HA/MSA/338/1'>338</scene>
|----
|----
|HA
|HA
Line 124: Line 145:
|}
|}


<scene name='User:Michael_Strong/H1N1/HA/MSA/All/1'>All Polymorphisms</scene>
== Multiple Sequence Alignment ==


H1N1 Swine Flu Multiple Sequence Alignment of HA Protein, 68 sequences


<pre>
<pre>
>gb|ABQ42446.1| hemagglutinin [Influenza A virus (A/swine/Guangxi/17/2005(H1N2))]
gi|229396357_A/New_York/12/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Length=566
gi|229892708_A/Canada-AB/RV153      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
 
gi|229396399_A/New_York/18/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Score = 1145 bits (2962),  Expect = 0.0, Method: Compositional matrix adjust.
gi|229536064_A/New_York/20/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Identities = 543/566 (95%), Positives = 558/566 (98%), Gaps = 0/566 (0%)
gi|229536055_A/New_York/20/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
 
gi|229396487_A/New_York/19/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
gi|227977099_A/New_York/19/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
            MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
gi|229396410_A/New_York/31/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK  60
gi|229396419_A/New_York/23/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
 
gi|229396381_A/New_York/11/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
gi|229396443_A/New_York/10/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
            LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFIDYEELRE
gi|229484031_A/Canada-ON/RV152      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETSNSDNGTCYPGDFIDYEELRE  120
gi|229535797_A/New_York/22/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
 
gi|229536129_A/New_York/13/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
gi|229536100_A/Massachusetts/0     MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
            QLSSVSSFERFEIFPKTSSWPNHDSN+GVTAACPHAGA SFY+NLIWLVKKGNSYPKLSK
gi|229535909_A/Massachusetts/0     MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDSNRGVTAACPHAGANSFYRNLIWLVKKGNSYPKLSK  180
gi|229535834_A/California/14/2      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
 
gi|229892704_A/Canada-ON/RV152      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
gi|229598877_A/Ohio/07/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
            SYIN+KGKEVLVLW IHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIA RPKVRDQ
gi|229396504_A/Ohio/07/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Sbjct  181  SYINNKGKEVLVLWSIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIATRPKVRDQ  240
gi|229396494_A/Ohio/07/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
 
gi|229892702_A/Canada-ON/RV152      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
gi|229783398_A/New_York/1682/2      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
            GRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDTPVHDCNTTCQTPK
gi|237511819_A/Mexico/4108/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Sbjct  241  AGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAIKRNSGSGIIISDTPVHDCNTTCQTPK  300
gi|229536049_A/Arizona/02/2009      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVDLL 50
 
gi|229536088_A/Indiana/09/2009      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
gi|229484027_A/Canada-NS/RV153      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
            GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRNVPSIQSRGLFGAIAGFIEGGWTG
gi|229892700_A/Canada-NS/RV153      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
gi|229892710_A/Canada-NS/RV153      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
 
gi|237511821_A/Mexico/4115/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
gi|237511811_A/Mexico/4482/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
            M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQFTAVGKEFN LEKR
gi|237511799_A/Mexico/4486/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNQLEKR  420
gi|237511817_A/Mexico/4603/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
 
gi|237511795_A/Mexico/4604/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
gi|229783367_A/Korea/01/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
            IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
gi|229783377_A/New_York/1669/2      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
gi|229536022_A/Arizona/01/2009      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
 
gi|229536003_A/Kansas/02/2009      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
gi|229536121_A/Michigan/02/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
            CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
gi|229598896_A/Texas/15/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
gi|229609563_A/Catalonia/P154/      -------------------------ANNSTDTVDTVLEKNVTVTHSVNLL 25
 
gi|229299521_A/Texas/04/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
gi|228860929_A/Netherlands/602      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
            LVLVVSLGA+SFWMCSNGSLQCRICI
gi|229484029_A/Mexico/InDRE448      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Sbjct  541  LVLVVSLGAVSFWMCSNGSLQCRICI  566
gi|229535997_A/South_Carolina/      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNIL 50
gi|229609557_A/Catalonia/P148/      ------------------------HANNSTDTVDTVLEKNVTVTHSVNIL 26
gi|229299515_A/Texas/04/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229396467_A/Texas/06/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229535816_A/Texas/09/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229535985_A/Texas/08/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229536075_A/Texas/07/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229368677_A/Denmark/513/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|227831826_A/Texas/04/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|227831774_A/Texas/05/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|227831776_A/California/06/2      MKAILVVMLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|227831759_A/California/05/2      MKAILVVMLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|227977104_A/California/10/2      MKAILVVMLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229536135_A/Colorado/03/200      MKAILVVMLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|228481046_A/Auckland/1/2009      ------------------------------------------VTHSVNLL 8
gi|237624327_A/swine/Alberta/O      MKAILVIMLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229536010_A/Kansas/03/2009      MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|228495370_A/Regensburg/Germ      ----------------------------------------VTVTHSVNLL 10
gi|229892706A/Mexico/InDRE4114      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229535949_A/California/04/2      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|227809830_A/California/04/2      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229299517_A/California/07/2      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|228017758_A/California/08/2      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|227977172_A/California/07/2      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
                                                                              *****::*


gi|229396357_A/New_York/12/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229892708_A/Canada-AB/RV153      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229396399_A/New_York/18/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229536064_A/New_York/20/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229536055_A/New_York/20/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229396487_A/New_York/19/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|227977099_A/New_York/19/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229396410_A/New_York/31/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229396419_A/New_York/23/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229396381_A/New_York/11/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229396443_A/New_York/10/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229484031_A/Canada-ON/RV152      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229535797_A/New_York/22/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229536129_A/New_York/13/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229536100_A/Massachusetts/0      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229535909_A/Massachusetts/0      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229535834_A/California/14/2      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229892704_A/Canada-ON/RV152      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229598877_A/Ohio/07/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYVVETS 100
gi|229396504_A/Ohio/07/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229396494_A/Ohio/07/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229892702_A/Canada-ON/RV152      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229783398_A/New_York/1682/2      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|237511819_A/Mexico/4108/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229536049_A/Arizona/02/2009      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229536088_A/Indiana/09/2009      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229484027_A/Canada-NS/RV153      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229892700_A/Canada-NS/RV153      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229892710_A/Canada-NS/RV153      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|237511821_A/Mexico/4115/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|237511811_A/Mexico/4482/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|237511799_A/Mexico/4486/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|237511817_A/Mexico/4603/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|237511795_A/Mexico/4604/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229783367_A/Korea/01/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229783377_A/New_York/1669/2      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229536022_A/Arizona/01/2009      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229536003_A/Kansas/02/2009      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229536121_A/Michigan/02/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229598896_A/Texas/15/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229609563_A/Catalonia/P154/      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 75
gi|229299521_A/Texas/04/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|228860929_A/Netherlands/602      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229484029_A/Mexico/InDRE448      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229535997_A/South_Carolina/      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229609557_A/Catalonia/P148/      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 76
gi|229299515_A/Texas/04/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229396467_A/Texas/06/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229535816_A/Texas/09/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229535985_A/Texas/08/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229536075_A/Texas/07/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229368677_A/Denmark/513/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|227831826_A/Texas/04/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|227831774_A/Texas/05/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|227831776_A/California/06/2      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|227831759_A/California/05/2      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|227977104_A/California/10/2      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229536135_A/Colorado/03/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|228481046_A/Auckland/1/2009      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 58
gi|237624327_A/swine/Alberta/O      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229536010_A/Kansas/03/2009      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|228495370_A/Regensburg/Germ      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 60
gi|229892706A/Mexico/InDRE4114      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229535949_A/California/04/2      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETP 100
gi|227809830_A/California/04/2      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETP 100
gi|229299517_A/California/07/2      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETP 100
gi|228017758_A/California/08/2      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETP 100
gi|227977172_A/California/07/2      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETP 100
                                    *********************************************:***.


>gb|AAL87865.1|AF455675_1  hemagglutinin [Influenza A virus (A/Swine/Ohio/891/01(H1N2))]
gi|229396357_A/New_York/12/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Length=566
gi|229892708_A/Canada-AB/RV153      SSDKGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
 
gi|229396399_A/New_York/18/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Score = 1140 bits (2950),  Expect = 0.0, Method: Compositional matrix adjust.
gi|229536064_A/New_York/20/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Identities = 540/566 (95%), Positives = 559/566 (98%), Gaps = 0/566 (0%)
gi|229536055_A/New_York/20/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
 
gi|229396487_A/New_York/19/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
gi|227977099_A/New_York/19/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
            MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
gi|229396410_A/New_York/31/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK  60
gi|229396419_A/New_York/23/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
 
gi|229396381_A/New_York/11/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
gi|229396443_A/New_York/10/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
            LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
gi|229484031_A/Canada-ON/RV152      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE  120
gi|229535797_A/New_York/22/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
 
gi|229536129_A/New_York/13/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
gi|229536100_A/Massachusetts/0      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
            QLSSVSSFERFEIFPKTSSWPNHD+N+GVTAACPHAGAKSFY+NLIWLVKKGNSYPK+SK
gi|229535909_A/Massachusetts/0      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTAACPHAGAKSFYRNLIWLVKKGNSYPKISK  180
gi|229535834_A/California/14/2      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
 
gi|229892704_A/Canada-ON/RV152      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
gi|229598877_A/Ohio/07/2009        SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHXSNKGVT 150
            SYIN+K KEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIA RPKVRDQ
gi|229396504_A/Ohio/07/2009        SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Sbjct  181  SYINNKEKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIATRPKVRDQ  240
gi|229396494_A/Ohio/07/2009        SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
 
gi|229892702_A/Canada-ON/RV152      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
gi|229783398_A/New_York/1682/2      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
            GRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDCNTTCQTPK
gi|237511819_A/Mexico/4108/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Sbjct  241  AGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCNTTCQTPK  300
gi|229536049_A/Arizona/02/2009      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
 
gi|229536088_A/Indiana/09/2009      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGIT 150
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
gi|229484027_A/Canada-NS/RV153      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
            GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
gi|229892700_A/Canada-NS/RV153      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG  360
gi|229892710_A/Canada-NS/RV153      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
 
gi|237511821_A/Mexico/4115/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
gi|237511811_A/Mexico/4482/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
            M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQFTAVGKEF+HLEKR
gi|237511799_A/Mexico/4486/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFSHLEKR  420
gi|237511817_A/Mexico/4603/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
 
gi|237511795_A/Mexico/4604/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
gi|229783367_A/Korea/01/2009        SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
            IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
gi|229783377_A/New_York/1669/2      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
gi|229536022_A/Arizona/01/2009      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
 
gi|229536003_A/Kansas/02/2009      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
gi|229536121_A/Michigan/02/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
            CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
gi|229598896_A/Texas/15/2009        SSDNGTCYPGDFIDYEELREQLSSMSSFERFEIFPKTSSWPNHDSNKGVT 150
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
gi|229609563_A/Catalonia/P154/      SSDNGTCYPGDFIDYEELREQLSSMSSFERFEIFPKTSSWPNHDSNKGVT 125
 
gi|229299521_A/Texas/04/2009        SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
gi|228860929_A/Netherlands/602      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
            LVLVVSLGAISFWMCSNGSLQCRICI
gi|229484029_A/Mexico/InDRE448      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
gi|229535997_A/South_Carolina/      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
 
gi|229609557_A/Catalonia/P148/      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 126
 
gi|229299515_A/Texas/04/2009        SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
>gb|AAF75994.1|AF250124_1  hemagglutinin [influenza A virus (A/Swine/Indiana/9K035/99 (H1N2))]
gi|229396467_A/Texas/06/2009        SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Length=566
gi|229535816_A/Texas/09/2009        SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
 
gi|229535985_A/Texas/08/2009        SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Score = 1140 bits (2950),  Expect = 0.0, Method: Compositional matrix adjust.
gi|229536075_A/Texas/07/2009        SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Identities = 541/566 (95%), Positives = 558/566 (98%), Gaps = 0/566 (0%)
gi|229368677_A/Denmark/513/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
 
gi|227831826_A/Texas/04/2009        SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Query  1   MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
gi|227831774_A/Texas/05/2009        SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
            MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
gi|227831776_A/California/06/2      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK  60
gi|227831759_A/California/05/2      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
 
gi|227977104_A/California/10/2      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
gi|229536135_A/Colorado/03/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
            LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
gi|228481046_A/Auckland/1/2009      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 108
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE  120
gi|237624327_A/swine/Alberta/O      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
 
gi|229536010_A/Kansas/03/2009      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
gi|228495370_A/Regensburg/Germ      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 110
            QLSSVSSFERFEIFPKTSSWPNHD+N+GVTAACPHAGA SFY+NLIWLVKKGNSYPK+SK
gi|229892706A/Mexico/InDRE4114      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTAACPHAGANSFYRNLIWLVKKGNSYPKISK  180
gi|229535949_A/California/04/2      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|227809830_A/California/04/2      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229299517_A/California/07/2      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|228017758_A/California/08/2      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|227977172_A/California/07/2      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
                                    ***:********************:****************** ****:*


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
gi|229396357_A/New_York/12/200      XACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
            SYIN+K KEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIA RPKVRDQ
gi|229892708_A/Canada-AB/RV153      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Sbjct  181  SYINNKEKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIATRPKVRDQ  240
gi|229396399_A/New_York/18/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
 
gi|229536064_A/New_York/20/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
gi|229536055_A/New_York/20/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
            GRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDCNTTCQTPK
gi|229396487_A/New_York/19/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Sbjct  241  AGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCNTTCQTPK  300
gi|227977099_A/New_York/19/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
 
gi|229396410_A/New_York/31/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
gi|229396419_A/New_York/23/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
            GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRNVPSIQSRGLFGAIAGFIEGGWTG
gi|229396381_A/New_York/11/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
gi|229396443_A/New_York/10/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
 
gi|229484031_A/Canada-ON/RV152      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
gi|229535797_A/New_York/22/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
            M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
gi|229536129_A/New_York/13/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
gi|229536100_A/Massachusetts/0      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
 
gi|229535909_A/Massachusetts/0      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
gi|229535834_A/California/14/2      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
            IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
gi|229892704_A/Canada-ON/RV152      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
gi|229598877_A/Ohio/07/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
 
gi|229396504_A/Ohio/07/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
gi|229396494_A/Ohio/07/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
            CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
gi|229892702_A/Canada-ON/RV152      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
gi|229783398_A/New_York/1682/2      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
 
gi|237511819_A/Mexico/4108/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
gi|229536049_A/Arizona/02/2009      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
            LVLVVSLGAISFWMCSNGSLQCRICI
gi|229536088_A/Indiana/09/2009      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
gi|229484027_A/Canada-NS/RV153      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229892700_A/Canada-NS/RV153      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229892710_A/Canada-NS/RV153      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|237511821_A/Mexico/4115/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|237511811_A/Mexico/4482/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|237511799_A/Mexico/4486/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|237511817_A/Mexico/4603/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|237511795_A/Mexico/4604/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229783367_A/Korea/01/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229783377_A/New_York/1669/2      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229536022_A/Arizona/01/2009      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229536003_A/Kansas/02/2009      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229536121_A/Michigan/02/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229598896_A/Texas/15/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229609563_A/Catalonia/P154/      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 175
gi|229299521_A/Texas/04/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|228860929_A/Netherlands/602      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229484029_A/Mexico/InDRE448      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229535997_A/South_Carolina/      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229609557_A/Catalonia/P148/      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 176
gi|229299515_A/Texas/04/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229396467_A/Texas/06/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229535816_A/Texas/09/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229535985_A/Texas/08/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229536075_A/Texas/07/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229368677_A/Denmark/513/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|227831826_A/Texas/04/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|227831774_A/Texas/05/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|227831776_A/California/06/2      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|227831759_A/California/05/2      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|227977104_A/California/10/2      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229536135_A/Colorado/03/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|228481046_A/Auckland/1/2009      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 158
gi|237624327_A/swine/Alberta/O      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229536010_A/Kansas/03/2009      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|228495370_A/Regensburg/Germ      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 160
gi|229892706A/Mexico/InDRE4114      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229535949_A/California/04/2      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|227809830_A/California/04/2      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229299517_A/California/07/2      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|228017758_A/California/08/2      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|227977172_A/California/07/2      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
                                    *************************************************


gi|229396357_A/New_York/12/200      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229892708_A/Canada-AB/RV153      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229396399_A/New_York/18/200      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229536064_A/New_York/20/200      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229536055_A/New_York/20/200      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229396487_A/New_York/19/200      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|227977099_A/New_York/19/200      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229396410_A/New_York/31/200      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229396419_A/New_York/23/200      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229396381_A/New_York/11/200      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229396443_A/New_York/10/200      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229484031_A/Canada-ON/RV152      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229535797_A/New_York/22/200      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229536129_A/New_York/13/200      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229536100_A/Massachusetts/0      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229535909_A/Massachusetts/0      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229535834_A/California/14/2      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229892704_A/Canada-ON/RV152      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229598877_A/Ohio/07/2009        TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229396504_A/Ohio/07/2009        TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229396494_A/Ohio/07/2009        TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229892702_A/Canada-ON/RV152      TSADQQSLYQNADAYVFVGXSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229783398_A/New_York/1682/2      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|237511819_A/Mexico/4108/200      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229536049_A/Arizona/02/2009      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229536088_A/Indiana/09/2009      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229484027_A/Canada-NS/RV153      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229892700_A/Canada-NS/RV153      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229892710_A/Canada-NS/RV153      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|237511821_A/Mexico/4115/200      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|237511811_A/Mexico/4482/200      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|237511799_A/Mexico/4486/200      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|237511817_A/Mexico/4603/200      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|237511795_A/Mexico/4604/200      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229783367_A/Korea/01/2009        TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229783377_A/New_York/1669/2      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229536022_A/Arizona/01/2009      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229536003_A/Kansas/02/2009      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229536121_A/Michigan/02/200      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229598896_A/Texas/15/2009        TSADQQSLYQNADAYVFVGSSRYSKKLKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229609563_A/Catalonia/P154/      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 225
gi|229299521_A/Texas/04/2009        TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|228860929_A/Netherlands/602      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229484029_A/Mexico/InDRE448      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229535997_A/South_Carolina/      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229609557_A/Catalonia/P148/      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 226
gi|229299515_A/Texas/04/2009        TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229396467_A/Texas/06/2009        TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229535816_A/Texas/09/2009        TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229535985_A/Texas/08/2009        TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229536075_A/Texas/07/2009        TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229368677_A/Denmark/513/200      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|227831826_A/Texas/04/2009        TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|227831774_A/Texas/05/2009        TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|227831776_A/California/06/2      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|227831759_A/California/05/2      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|227977104_A/California/10/2      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229536135_A/Colorado/03/200      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|228481046_A/Auckland/1/2009      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 208
gi|237624327_A/swine/Alberta/O      TSADQQSLYQNADANVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229536010_A/Kansas/03/2009      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|228495370_A/Regensburg/Germ      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 210
gi|229892706A/Mexico/InDRE4114      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRGQEGRMNYYWTL 250
gi|229535949_A/California/04/2      TSADQQSLYQNADTYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|227809830_A/California/04/2      TSADQQSLYQNADTYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229299517_A/California/07/2      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|228017758_A/California/08/2      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|227977172_A/California/07/2      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRXXEGRMNYYWTL 250
                                    *************: **** ******:***********  **********


>gb|AAL87870.1|AF455680_1  hemagglutinin [Influenza A virus (A/Swine/Indiana/P12439/00 (H1N2))]
gi|229396357_A/New_York/12/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Length=566
gi|229892708_A/Canada-AB/RV153      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|229396399_A/New_York/18/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Score = 1138 bits (2943),  Expect = 0.0, Method: Compositional matrix adjust.
gi|229536064_A/New_York/20/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Identities = 540/566 (95%), Positives = 557/566 (98%), Gaps = 0/566 (0%)
gi|229536055_A/New_York/20/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|229396487_A/New_York/19/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
gi|227977099_A/New_York/19/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
            MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
gi|229396410_A/New_York/31/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK  60
gi|229396419_A/New_York/23/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|229396381_A/New_York/11/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
gi|229396443_A/New_York/10/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
            LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETSSSDNGTCYPGDFI+YEELRE
gi|229484031_A/Canada-ON/RV152      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETSSSDNGTCYPGDFINYEELRE  120
gi|229535797_A/New_York/22/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|229536129_A/New_York/13/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
gi|229536100_A/Massachusetts/0     VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
            QLSSVSSFERFEIFPKTSSWPNHD+N+GVTAACP+AGAKSFY+NLIWLVKK NSYPKLSK
gi|229535909_A/Massachusetts/0     VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTAACPYAGAKSFYRNLIWLVKKENSYPKLSK  180
gi|229535834_A/California/14/2      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|229892704_A/Canada-ON/RV152      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
gi|229598877_A/Ohio/07/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
            SYIN+KGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIA RPKVRDQ
gi|229396504_A/Ohio/07/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  181  SYINNKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAARPKVRDQ  240
gi|229396494_A/Ohio/07/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|229892702_A/Canada-ON/RV152      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
gi|229783398_A/New_York/1682/2      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCDTTCQTPK 300
            GR+NYYWTLVEPGDKITFEATGNLVVPRYAFAMERN+GSGIIISDT VHDCNTTCQTPK
gi|237511819_A/Mexico/4108/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  AGRINYYWTLVEPGDKITFEATGNLVVPRYAFAMERNSGSGIIISDTSVHDCNTTCQTPK  300
gi|229536049_A/Arizona/02/2009      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|229536088_A/Indiana/09/2009      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
gi|229484027_A/Canada-NS/RV153      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
            GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRNVPSIQSRGLFGAIAGFIEGGWTG
gi|229892700_A/Canada-NS/RV153      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
gi|229892710_A/Canada-NS/RV153      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|237511821_A/Mexico/4115/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
gi|237511811_A/Mexico/4482/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
            M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQF AVGKEFNHLEKR
gi|237511799_A/Mexico/4486/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFIAVGKEFNHLEKR  420
gi|237511817_A/Mexico/4603/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|237511795_A/Mexico/4604/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
gi|229783367_A/Korea/01/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
            IENLNKKVDDGFLDIWTYNAELL+LLENERTLDYHDSNVKNLYEKVRSQLKNNA+EIGNG
gi|229783377_A/New_York/1669/2      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLILLENERTLDYHDSNVKNLYEKVRSQLKNNAREIGNG  480
gi|229536022_A/Arizona/01/2009      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|229536003_A/Kansas/02/2009      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
gi|229536121_A/Michigan/02/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
            CFEFYHKCD+ CMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
gi|229598896_A/Texas/15/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  481  CFEFYHKCDDKCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
gi|229609563_A/Catalonia/P154/      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 275
 
gi|229299521_A/Texas/04/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
gi|228860929_A/Netherlands/602      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
            LVLVVSLGAISFWMCSNGSLQCRICI
gi|229484029_A/Mexico/InDRE448      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
gi|229535997_A/South_Carolina/      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHECNTTCQTPK 300
 
gi|229609557_A/Catalonia/P148/      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHECNTTCQTPK 276
 
gi|229299515_A/Texas/04/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
>gb|ABV25639.1| hemagglutinin [Influenza A virus (A/swine/Minnesota/1192/2001(H1N2))]
gi|229396467_A/Texas/06/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Length=566
gi|229535816_A/Texas/09/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|229535985_A/Texas/08/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Score = 1137 bits (2941),  Expect = 0.0, Method: Compositional matrix adjust.
gi|229536075_A/Texas/07/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Identities = 540/566 (95%), Positives = 556/566 (98%), Gaps = 0/566 (0%)
gi|229368677_A/Denmark/513/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
gi|227831826_A/Texas/04/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
gi|227831774_A/Texas/05/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
gi|227831776_A/California/06/2      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
gi|227831759_A/California/05/2      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
gi|227977104_A/California/10/2      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
gi|229536135_A/Colorado/03/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
gi|228481046_A/Auckland/1/2009      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 258
gi|237624327_A/swine/Alberta/O      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
gi|229536010_A/Kansas/03/2009      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
gi|228495370_A/Regensburg/Germ      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 260
gi|229892706A/Mexico/InDRE4114      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
gi|229535949_A/California/04/2      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
gi|227809830_A/California/04/2      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
gi|229299517_A/California/07/2      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
gi|228017758_A/California/08/2      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
gi|227977172_A/California/07/2      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
                                    ****************************************:*:*******


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
gi|229396357_A/New_York/12/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
            MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
gi|229892708_A/Canada-AB/RV153      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK  60
gi|229396399_A/New_York/18/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
 
gi|229536064_A/New_York/20/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
gi|229536055_A/New_York/20/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
            LRGVAPLHLGKCNIAGW+LGNPECESL T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
gi|229396487_A/New_York/19/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTTSSWSYIVETSNSDNGTCYPGDFINYEELRE  120
gi|227977099_A/New_York/19/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
 
gi|229396410_A/New_York/31/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
gi|229396419_A/New_York/23/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
            QLSSVSSFERFEIFPKTSSWPNHD+++GVTAACPHAGA SFY+NLIWLVKKGNSYPKLSK
gi|229396381_A/New_York/11/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDADRGVTAACPHAGASSFYRNLIWLVKKGNSYPKLSK  180
gi|229396443_A/New_York/10/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
 
gi|229484031_A/Canada-ON/RV152      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
gi|229535797_A/New_York/22/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
            SYIN+K KEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIA RPKVRDQ
gi|229536129_A/New_York/13/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Sbjct  181  SYINNKEKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIATRPKVRDQ  240
gi|229536100_A/Massachusetts/0      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
 
gi|229535909_A/Massachusetts/0      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
gi|229535834_A/California/14/2      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
            GRMNYYWT+VEPGDKITFEATGNLVVPRYAFAM+RN+GSGIIISDT VHDCNTTCQTPK
gi|229892704_A/Canada-ON/RV152      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Sbjct  241  AGRMNYYWTIVEPGDKITFEATGNLVVPRYAFAMKRNSGSGIIISDTSVHDCNTTCQTPK  300
gi|229598877_A/Ohio/07/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
 
gi|229396504_A/Ohio/07/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
gi|229396494_A/Ohio/07/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
            GAINTSLPFQNIHPITIG+CPKYVKSTKLR+ATGLRNVPSIQSRGLFGAIAGFIEGGWTG
gi|229892702_A/Canada-ON/RV152      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Sbjct  301  GAINTSLPFQNIHPITIGECPKYVKSTKLRMATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
gi|229783398_A/New_York/1682/2      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
 
gi|237511819_A/Mexico/4108/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
gi|229536049_A/Arizona/02/2009      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
            M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
gi|229536088_A/Indiana/09/2009      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
gi|229484027_A/Canada-NS/RV153      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229892700_A/Canada-NS/RV153      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229892710_A/Canada-NS/RV153      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|237511821_A/Mexico/4115/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|237511811_A/Mexico/4482/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|237511799_A/Mexico/4486/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|237511817_A/Mexico/4603/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|237511795_A/Mexico/4604/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229783367_A/Korea/01/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229783377_A/New_York/1669/2      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229536022_A/Arizona/01/2009      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229536003_A/Kansas/02/2009      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229536121_A/Michigan/02/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229598896_A/Texas/15/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229609563_A/Catalonia/P154/      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 325
gi|229299521_A/Texas/04/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|228860929_A/Netherlands/602      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229484029_A/Mexico/InDRE448      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229535997_A/South_Carolina/      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229609557_A/Catalonia/P148/      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 326
gi|229299515_A/Texas/04/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229396467_A/Texas/06/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229535816_A/Texas/09/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229535985_A/Texas/08/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229536075_A/Texas/07/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229368677_A/Denmark/513/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|227831826_A/Texas/04/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|227831774_A/Texas/05/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|227831776_A/California/06/2      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|227831759_A/California/05/2      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|227977104_A/California/10/2      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229536135_A/Colorado/03/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|228481046_A/Auckland/1/2009      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 308
gi|237624327_A/swine/Alberta/O      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229536010_A/Kansas/03/2009      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|228495370_A/Regensburg/Germ      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 310
gi|229892706A/Mexico/InDRE4114      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229535949_A/California/04/2      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNIPSIQSRGLFGAI 350
gi|227809830_A/California/04/2      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNIPSIQSRGLFGAI 350
gi|229299517_A/California/07/2      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNIPSIQSRGLFGAI 350
gi|228017758_A/California/08/2      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNIPSIQSRGLFGAI 350
gi|227977172_A/California/07/2      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNIPSIQSRGLFGAI 350
                                    *************************************:************


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
gi|229396357_A/New_York/12/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
            IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
gi|229892708_A/Canada-AB/RV153      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
gi|229396399_A/New_York/18/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
 
gi|229536064_A/New_York/20/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
gi|229536055_A/New_York/20/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
            CFEFYHKCD+TCMESVKNGTYDY KYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
gi|229396487_A/New_York/19/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYSKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
gi|227977099_A/New_York/19/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
 
gi|229396410_A/New_York/31/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
gi|229396419_A/New_York/23/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
            LVLVVSLGAISFWMCSNGSLQCRICI
gi|229396381_A/New_York/11/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
gi|229396443_A/New_York/10/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
 
gi|229484031_A/Canada-ON/RV152      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
 
gi|229535797_A/New_York/22/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
>gb|AAL29710.1| hemagglutinin [Influenza A virus (A/SW/MN/23124-T/01(H1N2))]
gi|229536129_A/New_York/13/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gb|AAL29711.1| hemagglutinin [Influenza A virus (A/SW/MN/23124-S/01(H1N2))]
gi|229536100_A/Massachusetts/0      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Length=566
gi|229535909_A/Massachusetts/0      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
 
gi|229535834_A/California/14/2      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Score = 1136 bits (2939),  Expect = 0.0, Method: Compositional matrix adjust.
gi|229892704_A/Canada-ON/RV152      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Identities = 538/566 (95%), Positives = 557/566 (98%), Gaps = 0/566 (0%)
gi|229598877_A/Ohio/07/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
 
gi|229396504_A/Ohio/07/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Query  1   MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
gi|229396494_A/Ohio/07/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
            MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
gi|229892702_A/Canada-ON/RV152      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK  60
gi|229783398_A/New_York/1682/2      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
 
gi|237511819_A/Mexico/4108/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
gi|229536049_A/Arizona/02/2009      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
            LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
gi|229536088_A/Indiana/09/2009      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE  120
gi|229484027_A/Canada-NS/RV153      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVV 400
gi|229892700_A/Canada-NS/RV153      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVV 400
gi|229892710_A/Canada-NS/RV153      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVV 400
gi|237511821_A/Mexico/4115/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|237511811_A/Mexico/4482/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|237511799_A/Mexico/4486/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|237511817_A/Mexico/4603/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|237511795_A/Mexico/4604/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229783367_A/Korea/01/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229783377_A/New_York/1669/2      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229536022_A/Arizona/01/2009      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229536003_A/Kansas/02/2009      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229536121_A/Michigan/02/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229598896_A/Texas/15/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229609563_A/Catalonia/P154/      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 375
gi|229299521_A/Texas/04/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|228860929_A/Netherlands/602      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229484029_A/Mexico/InDRE448      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229535997_A/South_Carolina/      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229609557_A/Catalonia/P148/      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 376
gi|229299515_A/Texas/04/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229396467_A/Texas/06/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229535816_A/Texas/09/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229535985_A/Texas/08/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229536075_A/Texas/07/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229368677_A/Denmark/513/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|227831826_A/Texas/04/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|227831774_A/Texas/05/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|227831776_A/California/06/2      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|227831759_A/California/05/2      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|227977104_A/California/10/2      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229536135_A/Colorado/03/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|228481046_A/Auckland/1/2009      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 358
gi|237624327_A/swine/Alberta/O      VGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229536010_A/Kansas/03/2009      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|228495370_A/Regensburg/Germ      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 360
gi|229892706A/Mexico/InDRE4114      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229535949_A/California/04/2      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|227809830_A/California/04/2      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229299517_A/California/07/2      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|228017758_A/California/08/2      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|227977172_A/California/07/2      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
                                    .************************************************:


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
gi|229396357_A/New_York/12/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
            QLSSVSSFERFEIFPKTSSWPNHD+N+GVTAACPHAGA SFY+NLIWLVKKGNSYPK+SK
gi|229892708_A/Canada-AB/RV153      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTAACPHAGANSFYRNLIWLVKKGNSYPKISK  180
gi|229396399_A/New_York/18/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
 
gi|229536064_A/New_York/20/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
gi|229536055_A/New_York/20/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
            SYIN+K KEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIA RPKVRDQ
gi|229396487_A/New_York/19/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
Sbjct  181  SYINNKEKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIATRPKVRDQ  240
gi|227977099_A/New_York/19/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
 
gi|229396410_A/New_York/31/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
gi|229396419_A/New_York/23/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
            GRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDCNTTCQTPK
gi|229396381_A/New_York/11/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
Sbjct  241  AGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCNTTCQTPK  300
gi|229396443_A/New_York/10/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
 
gi|229484031_A/Canada-ON/RV152      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
gi|229535797_A/New_York/22/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
            GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
gi|229536129_A/New_York/13/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG  360
gi|229536100_A/Massachusetts/0      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
 
gi|229535909_A/Massachusetts/0      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
gi|229535834_A/California/14/2      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
            M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNH E+R
gi|229892704_A/Canada-ON/RV152      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHPERR  420
gi|229598877_A/Ohio/07/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKIDDGFLDIWTYNAELLVLLENER 450
 
gi|229396504_A/Ohio/07/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKIDDGFLDIWTYNAELLVLLENER 450
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
gi|229396494_A/Ohio/07/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKIDDGFLDIWTYNAELLVLLENER 450
            IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
gi|229892702_A/Canada-ON/RV152      EKMNTQFTAVGKEFNHLEKRIENLNKKIDDGFLDIWTYNAELLVLLENER 450
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
gi|229783398_A/New_York/1682/2      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|237511819_A/Mexico/4108/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLILLENER 450
gi|229536049_A/Arizona/02/2009      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229536088_A/Indiana/09/2009      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229484027_A/Canada-NS/RV153      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229892700_A/Canada-NS/RV153      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229892710_A/Canada-NS/RV153      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|237511821_A/Mexico/4115/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|237511811_A/Mexico/4482/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|237511799_A/Mexico/4486/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|237511817_A/Mexico/4603/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|237511795_A/Mexico/4604/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229783367_A/Korea/01/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229783377_A/New_York/1669/2      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229536022_A/Arizona/01/2009      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229536003_A/Kansas/02/2009      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229536121_A/Michigan/02/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229598896_A/Texas/15/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229609563_A/Catalonia/P154/      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 425
gi|229299521_A/Texas/04/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|228860929_A/Netherlands/602      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229484029_A/Mexico/InDRE448      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229535997_A/South_Carolina/      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229609557_A/Catalonia/P148/      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 426
gi|229299515_A/Texas/04/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229396467_A/Texas/06/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229535816_A/Texas/09/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229535985_A/Texas/08/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229536075_A/Texas/07/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229368677_A/Denmark/513/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|227831826_A/Texas/04/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|227831774_A/Texas/05/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|227831776_A/California/06/2      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|227831759_A/California/05/2      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|227977104_A/California/10/2      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229536135_A/Colorado/03/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|228481046_A/Auckland/1/2009      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 408
gi|237624327_A/swine/Alberta/O      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229536010_A/Kansas/03/2009      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|228495370_A/Regensburg/Germ      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 410
gi|229892706A/Mexico/InDRE4114      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229535949_A/California/04/2      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|227809830_A/California/04/2      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229299517_A/California/07/2      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|228017758_A/California/08/2      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|227977172_A/California/07/2      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
                                    ***************************:***************:******


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
gi|229396357_A/New_York/12/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
            CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
gi|229892708_A/Canada-AB/RV153      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
gi|229396399_A/New_York/18/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
 
gi|229536064_A/New_York/20/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
gi|229536055_A/New_York/20/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
            LVLVVSLGAISFWMCSNGSLQCRICI
gi|229396487_A/New_York/19/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
gi|227977099_A/New_York/19/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
 
gi|229396410_A/New_York/31/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
 
gi|229396419_A/New_York/23/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
>gb|ABQ42444.1| hemagglutinin [Influenza A virus (A/swine/Guangxi/13/2006(H1N2))]
gi|229396381_A/New_York/11/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
Length=566
gi|229396443_A/New_York/10/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
 
gi|229484031_A/Canada-ON/RV152      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
Score = 1135 bits (2935),  Expect = 0.0, Method: Compositional matrix adjust.
gi|229535797_A/New_York/22/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
Identities = 538/566 (95%), Positives = 557/566 (98%), Gaps = 0/566 (0%)
gi|229536129_A/New_York/13/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
 
gi|229536100_A/Massachusetts/0     TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
Query  1   MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
gi|229535909_A/Massachusetts/0     TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
            MKAILVVLLYTF TA+ADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
gi|229535834_A/California/14/2      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
Sbjct  1    MKAILVVLLYTFTTASADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK  60
gi|229892704_A/Canada-ON/RV152      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
 
gi|229598877_A/Ohio/07/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
gi|229396504_A/Ohio/07/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
            LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFIDYEELRE
gi|229396494_A/Ohio/07/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETSNSDNGTCYPGDFIDYEELRE  120
gi|229892702_A/Canada-ON/RV152      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
 
gi|229783398_A/New_York/1682/2      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
gi|237511819_A/Mexico/4108/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
            QLSSVSSFERFEIFPKTSSWP+HDSN+GVTAACPHAGA SFY+NLIWLVKKGNSYPKLSK
gi|229536049_A/Arizona/02/2009      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
Sbjct  121  QLSSVSSFERFEIFPKTSSWPDHDSNRGVTAACPHAGANSFYRNLIWLVKKGNSYPKLSK  180
gi|229536088_A/Indiana/09/2009      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229484027_A/Canada-NS/RV153      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229892700_A/Canada-NS/RV153      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229892710_A/Canada-NS/RV153      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|237511821_A/Mexico/4115/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|237511811_A/Mexico/4482/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|237511799_A/Mexico/4486/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|237511817_A/Mexico/4603/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|237511795_A/Mexico/4604/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229783367_A/Korea/01/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229783377_A/New_York/1669/2      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229536022_A/Arizona/01/2009      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229536003_A/Kansas/02/2009      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229536121_A/Michigan/02/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229598896_A/Texas/15/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229609563_A/Catalonia/P154/      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 475
gi|229299521_A/Texas/04/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|228860929_A/Netherlands/602      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229484029_A/Mexico/InDRE448      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229535997_A/South_Carolina/      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229609557_A/Catalonia/P148/      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 476
gi|229299515_A/Texas/04/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229396467_A/Texas/06/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229535816_A/Texas/09/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229535985_A/Texas/08/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229536075_A/Texas/07/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229368677_A/Denmark/513/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|227831826_A/Texas/04/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|227831774_A/Texas/05/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|227831776_A/California/06/2      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|227831759_A/California/05/2      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|227977104_A/California/10/2      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229536135_A/Colorado/03/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|228481046_A/Auckland/1/2009      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 458
gi|237624327_A/swine/Alberta/O      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229536010_A/Kansas/03/2009      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|228495370_A/Regensburg/Germ      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 460
gi|229892706A/Mexico/InDRE4114      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229535949_A/California/04/2      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|227809830_A/California/04/2      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229299517_A/California/07/2      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|228017758_A/California/08/2      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|227977172_A/California/07/2      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
                                    **************************************************


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
gi|229396357_A/New_York/12/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
            SYIN+KGKEVLVLWGIHHP TSA+QQSLYQNADAYVFVGSSRYSKKFKPEIA RPKVRDQ
gi|229892708_A/Canada-AB/RV153      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
Sbjct  181  SYINNKGKEVLVLWGIHHPPTSANQQSLYQNADAYVFVGSSRYSKKFKPEIATRPKVRDQ  240
gi|229396399_A/New_York/18/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
 
gi|229536064_A/New_York/20/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
gi|229536055_A/New_York/20/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
            GRMNYYWTLVEPGDKITFEATGNLVVPRYAFAM+RN+GSGIIISDT VHDCNTTCQTPK
gi|229396487_A/New_York/19/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
Sbjct  241  AGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMKRNSGSGIIISDTSVHDCNTTCQTPK  300
gi|227977099_A/New_York/19/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
 
gi|229396410_A/New_York/31/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
gi|229396419_A/New_York/23/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
            GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRNVPSIQSRGLFGAIAGFIEGGWTG
gi|229396381_A/New_York/11/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
gi|229396443_A/New_York/10/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
 
gi|229484031_A/Canada-ON/RV152      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
gi|229535797_A/New_York/22/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
            M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQFTAVGKEFN LE+R
gi|229536129_A/New_York/13/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNQLERR  420
gi|229536100_A/Massachusetts/0      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
 
gi|229535909_A/Massachusetts/0      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
gi|229535834_A/California/14/2      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
            IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
gi|229892704_A/Canada-ON/RV152      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
gi|229598877_A/Ohio/07/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
 
gi|229396504_A/Ohio/07/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
Query  481 CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
gi|229396494_A/Ohio/07/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
            CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKL+REEIDGVKLESTRIYQILAIYSTVASS
gi|229892702_A/Canada-ON/RV152      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLHREEIDGVKLESTRIYQILAIYSTVASS  540
gi|229783398_A/New_York/1682/2      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|237511819_A/Mexico/4108/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229536049_A/Arizona/02/2009      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229536088_A/Indiana/09/2009      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229484027_A/Canada-NS/RV153      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229892700_A/Canada-NS/RV153      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229892710_A/Canada-NS/RV153      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|237511821_A/Mexico/4115/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|237511811_A/Mexico/4482/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|237511799_A/Mexico/4486/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|237511817_A/Mexico/4603/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|237511795_A/Mexico/4604/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229783367_A/Korea/01/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229783377_A/New_York/1669/2      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229536022_A/Arizona/01/2009      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229536003_A/Kansas/02/2009      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229536121_A/Michigan/02/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229598896_A/Texas/15/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229609563_A/Catalonia/P154/      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 525
gi|229299521_A/Texas/04/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|228860929_A/Netherlands/602      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229484029_A/Mexico/InDRE448      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229535997_A/South_Carolina/      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229609557_A/Catalonia/P148/      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 526
gi|229299515_A/Texas/04/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229396467_A/Texas/06/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229535816_A/Texas/09/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229535985_A/Texas/08/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229536075_A/Texas/07/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229368677_A/Denmark/513/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|227831826_A/Texas/04/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|227831774_A/Texas/05/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|227831776_A/California/06/2      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|227831759_A/California/05/2      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|227977104_A/California/10/2      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229536135_A/Colorado/03/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|228481046_A/Auckland/1/2009      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 508
gi|237624327_A/swine/Alberta/O      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229536010_A/Kansas/03/2009      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|228495370_A/Regensburg/Germ      YDYPKYSEEAKLNREEIDGVK----------------------------- 481
gi|229892706A/Mexico/InDRE4114      YDYPKYSEEAKLNREEIDGVKLESTRFYQILAIYSTVASSLVLVVSLGAI 550
gi|229535949_A/California/04/2      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|227809830_A/California/04/2      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229299517_A/California/07/2      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|228017758_A/California/08/2      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|227977172_A/California/07/2      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
                                    *********************                           


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
gi|229396357_A/New_York/12/200      SFWMCSNGSLQCRICI 566
            LVLVVSLGAISFWMCSNGSLQC+ICI
gi|229892708_A/Canada-AB/RV153      SFWMCSNGSLQCRICI 566
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCKICI  566
gi|229396399_A/New_York/18/200      SFWMCSNGSLQCRICI 566
 
gi|229536064_A/New_York/20/200      SFWMCSNGSLQCRICI 566
 
gi|229536055_A/New_York/20/200      SFWMCSNGSLQCRICI 566
>gb|ABV25641.1| hemagglutinin [Influenza A virus (A/swine/Minnesota/00194/2003(H1N2))]
gi|229396487_A/New_York/19/200      SFWMCSNGSLQCRICI 566
Length=566
gi|227977099_A/New_York/19/200      SFWMCSNGSLQCRICI 566
 
gi|229396410_A/New_York/31/200      SFWMCSNGSLQCRICI 566
Score = 1131 bits (2926),  Expect = 0.0, Method: Compositional matrix adjust.
gi|229396419_A/New_York/23/200      SFWMCSNGSLQCRICI 566
Identities = 533/566 (94%), Positives = 556/566 (98%), Gaps = 0/566 (0%)
gi|229396381_A/New_York/11/200      SFWMCSNGSLQCRICI 566
 
gi|229396443_A/New_York/10/200      SFWMCSNGSLQCRICI 566
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
gi|229484031_A/Canada-ON/RV152      SFWMCSNGSLQCRICI 566
            MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
gi|229535797_A/New_York/22/200      SFWMCSNGSLQCRICI 566
Sbjct  1   MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK  60
gi|229536129_A/New_York/13/200      SFWMCSNGSLQCRICI 566
 
gi|229536100_A/Massachusetts/0     SFWMCSNGSLQCRICI 566
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
gi|229535909_A/Massachusetts/0     SFWMCSNGSLQCRICI 566
            LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNG CYPGDFI+YEELRE
gi|229535834_A/California/14/2      SFWMCSNGSLQCRICI 566
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETSNSDNGACYPGDFINYEELRE  120
gi|229892704_A/Canada-ON/RV152      SFWMCSNGSLQCRICI 566
 
gi|229598877_A/Ohio/07/2009        SFWMCSNGSLQCRICI 566
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
gi|229396504_A/Ohio/07/2009        SFWMCSNGSLQCRICI 566
            QLSSVSSFERFEIFPKTSSWPNHD+N+GVTAACPHAG  SFY+NLIWLVKKGNSYPK+SK
gi|229396494_A/Ohio/07/2009        SFWMCSNGSLQCRICI 566
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTAACPHAGTNSFYRNLIWLVKKGNSYPKISK  180
gi|229892702_A/Canada-ON/RV152      SFWMCSNGSLQCRICI 566
 
gi|229783398_A/New_York/1682/2      SFWMCSNGSLQCRICI 566
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
gi|237511819_A/Mexico/4108/200      SFWMCSNGSLQCRICI 566
            SYIN+K KEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYS+KF+PEIA RPKVRDQ
gi|229536049_A/Arizona/02/2009      SFWMCSNGSLQCRICI 566
Sbjct  181  SYINNKEKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSRKFEPEIATRPKVRDQ  240
gi|229536088_A/Indiana/09/2009      SFWMCSNGSLQCRICI 566
gi|229484027_A/Canada-NS/RV153      SFWMCSNGSLQCRICI 566
gi|229892700_A/Canada-NS/RV153      SFWMCSNGSLQCRICI 566
gi|229892710_A/Canada-NS/RV153      SFWMCSNGSLQCRICI 566
gi|237511821_A/Mexico/4115/200      SFWMCSNGSLQCRICI 566
gi|237511811_A/Mexico/4482/200      SFWMCSNGSLQCRICI 566
gi|237511799_A/Mexico/4486/200      SFWMCSNGSLQCRICI 566
gi|237511817_A/Mexico/4603/200      SFWMCSNGSLQCRICI 566
gi|237511795_A/Mexico/4604/200      SFWMCSNGSLQCRICI 566
gi|229783367_A/Korea/01/2009        SFWMCSNGSLQCRICI 566
gi|229783377_A/New_York/1669/2      SFWMCSNGSLQCRICI 566
gi|229536022_A/Arizona/01/2009      SFWMCSNGSLQCRICI 566
gi|229536003_A/Kansas/02/2009      SFWMCSNGSLQCRICI 566
gi|229536121_A/Michigan/02/200      SFWMCSNGSLQCRICI 566
gi|229598896_A/Texas/15/2009        SFWMCSNGSLQCRICI 566
gi|229609563_A/Catalonia/P154/      SFWMCSNG-------- 533
gi|229299521_A/Texas/04/2009        SFWMCSNGSLQCRICI 566
gi|228860929_A/Netherlands/602      SFWMCSNGSLQCRICI 566
gi|229484029_A/Mexico/InDRE448      SFWMCSNGSLQCRICI 566
gi|229535997_A/South_Carolina/      SFWMCSNGSLQCRICI 566
gi|229609557_A/Catalonia/P148/      SFWMCSNG-------- 534
gi|229299515_A/Texas/04/2009        SFWMCSNGSLQCRICI 566
gi|229396467_A/Texas/06/2009        SFWMCSNGSLQCRICI 566
gi|229535816_A/Texas/09/2009        SFWMCSNGSLQCRICI 566
gi|229535985_A/Texas/08/2009        SFWMCSNGSLQCRICI 566
gi|229536075_A/Texas/07/2009        SFWMCSNGSLQCRICI 566
gi|229368677_A/Denmark/513/200      SFWMCSNGSLQCRICI 566
gi|227831826_A/Texas/04/2009        SFWMCSNGSLQCRICI 566
gi|227831774_A/Texas/05/2009        SFWMCSNGSLQCRICI 566
gi|227831776_A/California/06/2      SFWMCSNGSLQCRICI 566
gi|227831759_A/California/05/2      SFWMCSNGSLQCRICI 566
gi|227977104_A/California/10/2      SFWMCSNGSLQCRICI 566
gi|229536135_A/Colorado/03/200      SFWMCSNGSLQCRICI 566
gi|228481046_A/Auckland/1/2009      SFWMCSNGSLQCRICI 524
gi|237624327_A/swine/Alberta/O      SFWMCSNGSLQCRICI 566
gi|229536010_A/Kansas/03/2009      SFWMCSNGSLQCRICI 566
gi|228495370_A/Regensburg/Germ      ----------------
gi|229892706A/Mexico/InDRE4114      SFWMCSNGSLQCRICI 566
gi|229535949_A/California/04/2      SFWMCSNGSLQCRICI 566
gi|227809830_A/California/04/2      SFWMCSNGSLQCRICI 566
gi|229299517_A/California/07/2      SFWMCSNGSLQCRICI 566
gi|228017758_A/California/08/2      SFWMCSNGSLQCRICI 566
gi|227977172_A/California/07/2      SFWMCSNGSLQCRICI 566
</pre>
 
== BLAST ==


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
<pre>
             GRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDCNT CQTPK
>gb|ABQ42446.1|  hemagglutinin [Influenza A virus (A/swine/Guangxi/17/2005(H1N2))]
Sbjct  241  AGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCNTACQTPK 300
Length=566
 
Score = 1145 bits (2962),  Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/566 (95%), Positives = 558/566 (98%), Gaps = 0/566 (0%)
 
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
            MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK  60
 
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
            LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFIDYEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETSNSDNGTCYPGDFIDYEELRE  120
 
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
            QLSSVSSFERFEIFPKTSSWPNHDSN+GVTAACPHAGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDSNRGVTAACPHAGANSFYRNLIWLVKKGNSYPKLSK  180
 
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
            SYIN+KGKEVLVLW IHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIA RPKVRDQ
Sbjct  181  SYINNKGKEVLVLWSIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIATRPKVRDQ  240
 
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAIKRNSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRNVPSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNVPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNS+IEKMNTQFTAVGKEF+HLEKR
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQFTAVGKEFN LEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSIIEKMNTQFTAVGKEFSHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNQLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKN+YEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNIYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Line 500: Line 1,038:


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVLVVSLGAISFWMCSNGSLQCRICI
             LVLVVSLGA+SFWMCSNGSLQCRICI
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  LVLVVSLGAVSFWMCSNGSLQCRICI 566




>gb|AAL29713.1|  hemagglutinin [Influenza A virus (A/SW/MN/16419/01(H1N2))]
>gb|AAL87865.1|AF455675_1 hemagglutinin [Influenza A virus (A/Swine/Ohio/891/01(H1N2))]
Length=566
Length=566


  Score = 1130 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1140 bits (2950),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 535/566 (94%), Positives = 555/566 (98%), Gaps = 0/566 (0%)
  Identities = 540/566 (95%), Positives = 559/566 (98%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE +HNGKLCK
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEGRHNGKLCK 60
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Line 519: Line 1,057:


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPKTSSWPNHD+N+GVTAACPHAG  SFY+NLIWLVKKGNSYPK+SK
             QLSSVSSFERFEIFPKTSSWPNHD+N+GVTAACPHAGAKSFY+NLIWLVKKGNSYPK+SK
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTAACPHAGTNSFYRNLIWLVKKGNSYPKISK 180
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTAACPHAGAKSFYRNLIWLVKKGNSYPKISK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K KEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIA RPKVRDQ
             SYIN+K KEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIA RPKVRDQ
Sbjct  181  SYINNKEKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAARPKVRDQ 240
Sbjct  181  SYINNKEKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIATRPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDCNT CQTPK
             GRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCNTICQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 547: Line 1,085:


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVLVVSLGAISFWMCSNGSLQCRIC+
             LVLVVSLGAISFWMCSNGSLQCRICI
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICM 566
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICI 566




>gb|AAL87871.1|AF455681_1 hemagglutinin [Influenza A virus (A/Swine/Illinois/100085A/01
>gb|AAF75994.1|AF250124_1 hemagglutinin [influenza A virus (A/Swine/Indiana/9K035/99 (H1N2))]
(H1N2))]
Length=566
Length=566


  Score = 1128 bits (2918),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1140 bits (2950),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 534/566 (94%), Positives = 556/566 (98%), Gaps = 0/566 (0%)
  Identities = 541/566 (95%), Positives = 558/566 (98%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Line 563: Line 1,100:


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLH+GKCNIAGW+LGNPECESL TASSWSYIVETS+S+NGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHMGKCNIAGWLLGNPECESLFTASSWSYIVETSNSENGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPKTSSWPNHD+N+GVTAACPHAGA SFY+NLIWLVKKG+SYPK+SK
             QLSSVSSFERFEIFPKTSSWPNHD+N+GVTAACPHAGA SFY+NLIWLVKKGNSYPK+SK
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTAACPHAGANSFYRNLIWLVKKGDSYPKISK 180
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTAACPHAGANSFYRNLIWLVKKGNSYPKISK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K KEVLVLWGIHHPSTSADQQSLYQNADAYVFVGS RYSKKFKPEIA RPKVRDQ
             SYIN+K KEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIA RPKVRDQ
Sbjct  181  SYINNKEKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSLRYSKKFKPEIATRPKVRDQ 240
Sbjct  181  SYINNKEKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIATRPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT V+DCNTTCQTPK
             GRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVYDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRNVPSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNVPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQF AVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFKAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Line 599: Line 1,136:




>gb|ACH69547.1|  hemagglutinin [Influenza A virus (A/swine/OH/511445/2007(H1N1))]
>gb|AAL87870.1|AF455680_1 hemagglutinin [Influenza A virus (A/Swine/Indiana/P12439/00 (H1N2))]
Length=566
Length=566


  Score = 1127 bits (2916),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1138 bits (2943),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 531/566 (93%), Positives = 556/566 (98%), Gaps = 0/566 (0%)
  Identities = 540/566 (95%), Positives = 557/566 (98%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE++HNGKLCK
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENRHNGKLCK 60
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECESLSTASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETSSSDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLSTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETSSSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPKTSSWPNHD+N+GVTAACPHAG  SFY+NLIWLVKKGNSYPK++K
             QLSSVSSFERFEIFPKTSSWPNHD+N+GVTAACP+AGAKSFY+NLIWLVKK NSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTAACPHAGTNSFYRNLIWLVKKGNSYPKINK 180
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTAACPYAGAKSFYRNLIWLVKKENSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K KEVLVLW IHHPSTSADQQSLYQNADAYVFVGSSRYS+KF+PEIA RPKVRDQ
             SYIN+KGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIA RPKVRDQ
Sbjct  181  SYINNKEKEVLVLWAIHHPSTSADQQSLYQNADAYVFVGSSRYSRKFEPEIATRPKVRDQ 240
Sbjct  181  SYINNKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAARPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDC+TTCQTP
             GR+NYYWTLVEPGDKITFEATGNLVVPRYAFAMERN+GSGIIISDT VHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCDTTCQTPN 300
Sbjct  241  AGRINYYWTLVEPGDKITFEATGNLVVPRYAFAMERNSGSGIIISDTSVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRNVPSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNVPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQFTAVGKEF+HLE+R
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQF AVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFSHLERR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFIAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLDIWTYNAELL+LLENERTLDYHDSNVKNLYEKVRSQLKNNA+EIGNG
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLILLENERTLDYHDSNVKNLYEKVRSQLKNNAREIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+ CMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDKCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 646: Line 1,183:




>gb|AAK71687.1|  hemagglutinin [Influenza A virus (A/Turkey/MO/24093/99(H1N2))]
>gb|ABV25639.1|  hemagglutinin [Influenza A virus (A/swine/Minnesota/1192/2001(H1N2))]
Length=566
Length=566


  Score = 1127 bits (2916),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1137 bits (2941),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 535/566 (94%), Positives = 552/566 (97%), Gaps = 0/566 (0%)
  Identities = 540/566 (95%), Positives = 556/566 (98%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Line 657: Line 1,194:


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTTSSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFP+TSSWPNHD+N+GVTAACPHAGA SFY+NLIWL KKG+SYPKLSK
             QLSSVSSFERFEIFPKTSSWPNHD+++GVTAACPHAGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPETSSWPNHDTNRGVTAACPHAGANSFYRNLIWLAKKGDSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDADRGVTAACPHAGASSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+KGKEVLVLWGIHHP TSADQQSLYQNADAYVFVGSSRYSKKFKPEIA RPKVR Q
             SYIN+K KEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIA RPKVRDQ
Sbjct  181  SYINNKGKEVLVLWGIHHPPTSADQQSLYQNADAYVFVGSSRYSKKFKPEIATRPKVRGQ 240
Sbjct  181  SYINNKEKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIATRPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTLVEPGDKITFEATGNLVVPRYAFAM+RN+ SGIIISD  VHDCNTTCQTPK
             GRMNYYWT+VEPGDKITFEATGNLVVPRYAFAM+RN+GSGIIISDT VHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMKRNSESGIIISDISVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTIVEPGDKITFEATGNLVVPRYAFAMKRNSGSGIIISDTSVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRNVPSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHPITIG+CPKYVKSTKLR+ATGLRNVPSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNVPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPITIGECPKYVKSTKLRMATGLRNVPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQFT VGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFTVVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Line 685: Line 1,222:


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDY KYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYSKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVLVVSLG ISFWMCSNGSLQCRICI
             LVLVVSLGAISFWMCSNGSLQCRICI
Sbjct  541  LVLVVSLGTISFWMCSNGSLQCRICI 566
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICI 566




>gb|AAL87872.1|AF455682_1 hemagglutinin [Influenza A virus (A/Swine/Illinois/100084/01  
>gb|AAL29710.1|  hemagglutinin [Influenza A virus (A/SW/MN/23124-T/01(H1N2))]
(H1N2))]
gb|AAL29711.1|  hemagglutinin [Influenza A virus (A/SW/MN/23124-S/01(H1N2))]
Length=566
Length=566


  Score = 1127 bits (2914),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1136 bits (2939),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 533/566 (94%), Positives = 553/566 (97%), Gaps = 0/566 (0%)
  Identities = 538/566 (95%), Positives = 557/566 (98%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Line 705: Line 1,242:


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLH+GKCNIAGW+LGNPECESL TASSWSYIVETS+S+NGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHMGKCNIAGWLLGNPECESLFTASSWSYIVETSNSENGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSV SFERFEIFPKTSSWPNHD+N+GVTAACPHAGA SFY+NLIWLVKKGNSYPK+SK
             QLSSVSSFERFEIFPKTSSWPNHD+N+GVTAACPHAGA SFY+NLIWLVKKGNSYPK+SK
Sbjct  121  QLSSVLSFERFEIFPKTSSWPNHDTNRGVTAACPHAGANSFYRNLIWLVKKGNSYPKISK 180
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTAACPHAGANSFYRNLIWLVKKGNSYPKISK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K KEVLVLWGIHHPSTSADQQSLYQN DAYVFVGSSRYSKKFKPEIA RPKVRDQ
             SYIN+K KEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIA RPKVRDQ
Sbjct  181  SYINNKEKEVLVLWGIHHPSTSADQQSLYQNEDAYVFVGSSRYSKKFKPEIATRPKVRDQ 240
Sbjct  181  SYINNKEKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIATRPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT HDCNTTCQTPK
             GRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSAHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+A GLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMARGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQF AVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNH E+R
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFKAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHPERR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Line 741: Line 1,278:




>gb|ABV25642.1|  hemagglutinin [Influenza A virus (A/swine/Kansas/00246/2004(H1N2))]
>gb|ABQ42444.1|  hemagglutinin [Influenza A virus (A/swine/Guangxi/13/2006(H1N2))]
Length=566
Length=566


  Score = 1124 bits (2907),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1135 bits (2935),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 528/566 (93%), Positives = 555/566 (98%), Gaps = 0/566 (0%)
  Identities = 538/566 (95%), Positives = 557/566 (98%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDT+LEKNVTVTHSVNLLED+HNGKLCK
             MKAILVVLLYTF TA+ADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTILEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILVVLLYTFTTASADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECESL TA SWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFIDYEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTARSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETSNSDNGTCYPGDFIDYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFP TSSWPNHD+N+GVTAACPHAG KSFY+NLIWLVKKG+SYPK+SK
             QLSSVSSFERFEIFPKTSSWP+HDSN+GVTAACPHAGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPNTSSWPNHDTNRGVTAACPHAGTKSFYRNLIWLVKKGDSYPKISK 180
Sbjct  121  QLSSVSSFERFEIFPKTSSWPDHDSNRGVTAACPHAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K KEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSS+YSKKFKPEIA RPKVRDQ
             SYIN+KGKEVLVLWGIHHP TSA+QQSLYQNADAYVFVGSSRYSKKFKPEIA RPKVRDQ
Sbjct  181  SYINNKEKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSKYSKKFKPEIATRPKVRDQ 240
Sbjct  181  SYINNKGKEVLVLWGIHHPPTSANQQSLYQNADAYVFVGSSRYSKKFKPEIATRPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
            EGRM+YYWT+VEPGDKITFEATGNLVVPRYAF ++RN+GSGIIISDT VHDCNTTCQTPK
            GRMNYYWTLVEPGDKITFEATGNLVVPRYAFAM+RN+GSGIIISDT VHDCNTTCQTPK
Sbjct  241  EGRMDYYWTIVEPGDKITFEATGNLVVPRYAFELKRNSGSGIIISDTSVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMKRNSGSGIIISDTSVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRNVPSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNVPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNS+IEKMNTQFTAVGKEF+HLEKR
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQFTAVGKEFN LE+R
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSIIEKMNTQFTAVGKEFSHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNQLERR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKV+SQLKNNAKEIGNG
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVKSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+ CMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKL+REEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDMCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLHREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVL+VSLGAISFWMCSNGSLQCRICI
             LVLVVSLGAISFWMCSNGSLQC+ICI
Sbjct  541  LVLIVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCKICI 566




>gb|ACE77934.1|  hemagglutinin [Influenza A virus (A/swine/Korea/PZ4/2006(H1N2))]
>gb|ABV25641.1|  hemagglutinin [Influenza A virus (A/swine/Minnesota/00194/2003(H1N2))]
Length=566
Length=566


  Score = 1123 bits (2904),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1131 bits (2926),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 530/566 (93%), Positives = 555/566 (98%), Gaps = 0/566 (0%)
  Identities = 533/566 (94%), Positives = 556/566 (98%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNG CYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLITASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETSNSDNGACYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPKTSSWPNH++++GVTAACPHAG  SFYKNLIWLVKK NSYPK+SK
             QLSSVSSFERFEIFPKTSSWPNHD+N+GVTAACPHAG  SFY+NLIWLVKKGNSYPK+SK
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHNTDRGVTAACPHAGTSSFYKNLIWLVKKENSYPKISK 180
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTAACPHAGTNSFYRNLIWLVKKGNSYPKISK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+KGKEVLVLWGIHHPS SADQ++LYQNADAYVFVGSSRYSKKF PEIA RPKVRDQ
             SYIN+K KEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYS+KF+PEIA RPKVRDQ
Sbjct  181  SYINNKGKEVLVLWGIHHPSNSADQRTLYQNADAYVFVGSSRYSKKFTPEIATRPKVRDQ 240
Sbjct  181  SYINNKEKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSRKFEPEIATRPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
            EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDCNTTCQTPK
            GRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDCNT CQTPK
Sbjct  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCNTACQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 819: Line 1,356:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAADLKSTQNAI+ ITNKVNS+IEKMNTQFTAVGKEF+HLEKR
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNS+IEKMNTQFTAVGKEF+HLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAINGITNKVNSIIEKMNTQFTAVGKEFSHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSIIEKMNTQFTAVGKEFSHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKN+YEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNIYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKL RE+IDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLTREKIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 835: Line 1,372:




>gb|ACE77935.1|  hemagglutinin [Influenza A virus (A/swine/Korea/PZ7/2006(H1N2))]
>gb|AAL29713.1|  hemagglutinin [Influenza A virus (A/SW/MN/16419/01(H1N2))]
gb|ACE77936.1|  hemagglutinin [Influenza A virus (A/swine/Korea/PZ14/2006(H1N2))]
Length=566
Length=566


  Score = 1122 bits (2903),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1130 bits (2924),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 529/566 (93%), Positives = 555/566 (98%), Gaps = 0/566 (0%)
  Identities = 535/566 (94%), Positives = 555/566 (98%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE +HNGKLCK
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEGRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLITASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFP+TSSWPNH++++GVTAACPHAG  SFYKNLIWLVKK NSYPK+SK
             QLSSVSSFERFEIFPKTSSWPNHD+N+GVTAACPHAG  SFY+NLIWLVKKGNSYPK+SK
Sbjct  121  QLSSVSSFERFEIFPRTSSWPNHNTDRGVTAACPHAGTSSFYKNLIWLVKKENSYPKISK 180
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTAACPHAGTNSFYRNLIWLVKKGNSYPKISK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+KGKEVLVLWGIHHPS SADQ++LYQNADAYVFVGSSRYSKKF PEIA RPKVRDQ
             SYIN+K KEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIA RPKVRDQ
Sbjct  181  SYINNKGKEVLVLWGIHHPSNSADQRTLYQNADAYVFVGSSRYSKKFTPEIATRPKVRDQ 240
Sbjct  181  SYINNKEKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAARPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
            EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDCNTTCQTPK
            GRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDCNT CQTPK
Sbjct  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCNTICQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 867: Line 1,403:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAADLKSTQNAI+ ITNKVNS+IEKMNTQFTAVGKEF+HLEKR
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQFTAVGKEF+HLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAINGITNKVNSIIEKMNTQFTAVGKEFSHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFSHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Line 875: Line 1,411:


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKL RE+IDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLTREKIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVLVVSLGAISFWMCSNGSLQCRICI
             LVLVVSLGAISFWMCSNGSLQCRIC+
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICM 566




>gb|AAL87867.1|AF455677_1 hemagglutinin [Influenza A virus (A/Swine/North Carolina/93523/01  
>gb|AAL87871.1|AF455681_1 hemagglutinin [Influenza A virus (A/Swine/Illinois/100085A/01  
(H1N2))]
(H1N2))]
Length=565
Length=566


  Score = 1122 bits (2901),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1128 bits (2918),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 533/566 (94%), Positives = 553/566 (97%), Gaps = 1/566 (0%)
  Identities = 534/566 (94%), Positives = 556/566 (98%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILVVLLYTF TA ADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILVVLLYTFTTAKADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVET +SDNGTCYPGDFI+YEELRE
             LRGVAPLH+GKCNIAGW+LGNPECESL TASSWSYIVETS+S+NGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETPNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHMGKCNIAGWLLGNPECESLFTASSWSYIVETSNSENGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPKTS WPNHD+N+GVTAACPHAGA SFY+NLIWLV+K NSYPKLSK
             QLSSVSSFERFEIFPKTSSWPNHD+N+GVTAACPHAGA SFY+NLIWLVKKG+SYPK+SK
Sbjct  121  QLSSVSSFERFEIFPKTS-WPNHDTNRGVTAACPHAGANSFYRNLIWLVEKENSYPKLSK 179
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTAACPHAGANSFYRNLIWLVKKGDSYPKISK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K EVLVLWGIHHPSTSADQ+SLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ
             SYIN+K KEVLVLWGIHHPSTSADQQSLYQNADAYVFVGS RYSKKFKPEIA RPKVRDQ
Sbjct  180 SYINNKEMEVLVLWGIHHPSTSADQRSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ 239
Sbjct  181 SYINNKEKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSLRYSKKFKPEIATRPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTLVEPGDKITFEATGNLVVPRYAFAM+R +GSGIIISDT VHDCNTTCQTPK
             GRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT V+DCNTTCQTPK
Sbjct  240 AGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMKRGSGSGIIISDTSVHDCNTTCQTPK 299
Sbjct  241 AGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVYDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQN+HP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  300 GAINTSLPFQNVHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 359
Sbjct  301 GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQF AVGKEFNHLEKR
Sbjct  360 MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 419
Sbjct  361 MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFKAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  420 IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 479
Sbjct  421 IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  480 CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  539
Sbjct  481 CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVLVVSLGAISFWMCSNGSLQCRICI
             LVLVVSLGAISFWMCSNGSLQCRICI
Sbjct  540 LVLVVSLGAISFWMCSNGSLQCRICI  565
Sbjct  541 LVLVVSLGAISFWMCSNGSLQCRICI  566




>gb|ABW71521.1|  hemagglutinin [Influenza A virus (A/swine/Iowa/24297/1991(H1N1))]
>gb|ACH69547.1|  hemagglutinin [Influenza A virus (A/swine/OH/511445/2007(H1N1))]
Length=566
Length=566


  Score = 1121 bits (2900),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1127 bits (2916),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 530/566 (93%), Positives = 552/566 (97%), Gaps = 0/566 (0%)
  Identities = 531/566 (93%), Positives = 556/566 (98%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE++HNGKLCK
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESLSTASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLSTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFPKTSSWPNHD+N+GVTAACPHAG  SFY+NLIWLVKKGNSYPK++K
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTAACPHAGTNSFYRNLIWLVKKGNSYPKINK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
             SYIN+K KEVLVLW IHHPSTSADQQSLYQNADAYVFVGSSRYS+KF+PEIA RPKVRDQ
Sbjct  181  SYINNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240
Sbjct  181  SYINNKEKEVLVLWAIHHPSTSADQQSLYQNADAYVFVGSSRYSRKFEPEIATRPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
             GRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDC+TTCQTP
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCDTTCQTPN 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 962: Line 1,498:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQFTAVGKEF+HLE+R
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFSHLERR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Line 974: Line 1,510:


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVL+VSLGAISFWMCSNGSLQCRICI
             LVLVVSLGAISFWMCSNGSLQCRICI
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICI 566




>gb|ACE77937.1|  hemagglutinin [Influenza A virus (A/swine/Korea/CY08/2007(H1N2))]
>gb|AAK71687.1|  hemagglutinin [Influenza A virus (A/Turkey/MO/24093/99(H1N2))]
Length=566
Length=566


  Score = 1120 bits (2896),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1127 bits (2916),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 528/566 (93%), Positives = 554/566 (97%), Gaps = 0/566 (0%)
  Identities = 535/566 (94%), Positives = 552/566 (97%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Line 990: Line 1,526:
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLITASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFP+TSSWPNH++++GVTAACPHAG  SFYKNLIWLVKK NSYPK+SK
             QLSSVSSFERFEIFP+TSSWPNHD+N+GVTAACPHAGA SFY+NLIWL KKG+SYPKLSK
Sbjct  121  QLSSVSSFERFEIFPRTSSWPNHNTDRGVTAACPHAGTSSFYKNLIWLVKKENSYPKISK 180
Sbjct  121  QLSSVSSFERFEIFPETSSWPNHDTNRGVTAACPHAGANSFYRNLIWLAKKGDSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+KGKEVLVLWGIHHPS SADQ++LYQNADAYVFVGSSRYSKKF PEIA RPKVR Q
             SYIN+KGKEVLVLWGIHHP TSADQQSLYQNADAYVFVGSSRYSKKFKPEIA RPKVR Q
Sbjct  181  SYINNKGKEVLVLWGIHHPSNSADQRTLYQNADAYVFVGSSRYSKKFTPEIATRPKVRGQ 240
Sbjct  181  SYINNKGKEVLVLWGIHHPPTSADQQSLYQNADAYVFVGSSRYSKKFKPEIATRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
            EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDCNTTCQTPK
            GRMNYYWTLVEPGDKITFEATGNLVVPRYAFAM+RN+ SGIIISD  VHDCNTTCQTPK
Sbjct  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMKRNSESGIIISDISVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRNVPSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNVPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAADLKSTQNAI+ ITNKVNS+IEKMNTQFTAVGKEF+HLEKR
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQFT VGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAINGITNKVNSIIEKMNTQFTAVGKEFSHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFTVVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Line 1,017: Line 1,553:


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKL RE+IDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLTREKIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVLVVSLGAISFWMCSNGSLQCRICI
             LVLVVSLG ISFWMCSNGSLQCRICI
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  LVLVVSLGTISFWMCSNGSLQCRICI 566




>gb|ABG34254.1|  hemagglutinin [Influenza A virus (A/swine/Korea/S11/2005(H1N2))]
>gb|AAL87872.1|AF455682_1 hemagglutinin [Influenza A virus (A/Swine/Illinois/100084/01
(H1N2))]
Length=566
Length=566


  Score = 1119 bits (2894),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1127 bits (2914),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 527/566 (93%), Positives = 552/566 (97%), Gaps = 0/566 (0%)
  Identities = 533/566 (94%), Positives = 553/566 (97%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILVVLLYTFATAN+DTLCIGYHANNSTDTVDT+LE+N+TVTHSVNLLED+HNGKLCK
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILVVLLYTFATANSDTLCIGYHANNSTDTVDTILERNITVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNP CESL TASSWSYIVE S+SDNGTCYPGDFI+YEELRE
             LRGVAPLH+GKCNIAGW+LGNPECESL TASSWSYIVETS+S+NGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPGCESLFTASSWSYIVEKSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHMGKCNIAGWLLGNPECESLFTASSWSYIVETSNSENGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPKTSSWPNHD+N+GVTA+CPHAG KSFY+NLIWLVKK NSYPK+SK
             QLSSV SFERFEIFPKTSSWPNHD+N+GVTAACPHAGA SFY+NLIWLVKKGNSYPK+SK
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTASCPHAGTKSFYRNLIWLVKKENSYPKISK 180
Sbjct  121  QLSSVLSFERFEIFPKTSSWPNHDTNRGVTAACPHAGANSFYRNLIWLVKKGNSYPKISK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN K KEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIA RPKVRDQ
             SYIN+K KEVLVLWGIHHPSTSADQQSLYQN DAYVFVGSSRYSKKFKPEIA RPKVRDQ
Sbjct  181  SYINSKEKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIATRPKVRDQ 240
Sbjct  181  SYINNKEKEVLVLWGIHHPSTSADQQSLYQNEDAYVFVGSSRYSKKFKPEIATRPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
            EGRMNYYWT+VEPGDKITFEATGNLVVPRYA A++RN+GSGIIISDT VHD NT CQTPK
            GRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT HDCNTTCQTPK
Sbjct  241  EGRMNYYWTIVEPGDKITFEATGNLVVPRYALALKRNSGSGIIISDTSVHDGNTACQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSAHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+A GLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMARGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQFTAVGKEF+HLEKR
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQF AVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFSHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFKAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Line 1,064: Line 1,601:


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREE+DGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEVDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVLVVSLGA SFWMCSNGSLQCRICI
             LVLVVSLGAISFWMCSNGSLQCRICI
Sbjct  541  LVLVVSLGATSFWMCSNGSLQCRICI 566
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICI 566




>gb|ACE77931.1|  hemagglutinin [Influenza A virus (A/swine/Korea/JL02/2005(H1N2))]
>gb|ABV25642.1|  hemagglutinin [Influenza A virus (A/swine/Kansas/00246/2004(H1N2))]
Length=566
Length=566


  Score = 1118 bits (2893),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1124 bits (2907),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 528/566 (93%), Positives = 553/566 (97%), Gaps = 0/566 (0%)
  Identities = 528/566 (93%), Positives = 555/566 (98%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDT+LEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTILEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL TA SWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLITASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTARSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFP+TSSWPNH++++GVTAACPHAG  SFYKNLIWLVKK NSYPK+SK
             QLSSVSSFERFEIFP TSSWPNHD+N+GVTAACPHAG KSFY+NLIWLVKKG+SYPK+SK
Sbjct  121  QLSSVSSFERFEIFPRTSSWPNHNTDRGVTAACPHAGTSSFYKNLIWLVKKENSYPKISK 180
Sbjct  121  QLSSVSSFERFEIFPNTSSWPNHDTNRGVTAACPHAGTKSFYRNLIWLVKKGDSYPKISK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+KGKEVLVLWGIHHPS SADQ +LYQNADAYVFVGSSRYSKKF PEIA RPKVR Q
             SYIN+K KEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSS+YSKKFKPEIA RPKVRDQ
Sbjct  181  SYINNKGKEVLVLWGIHHPSNSADQLTLYQNADAYVFVGSSRYSKKFTPEIATRPKVRGQ 240
Sbjct  181  SYINNKEKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSKYSKKFKPEIATRPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDCNTTCQTPK
             EGRM+YYWT+VEPGDKITFEATGNLVVPRYAF ++RN+GSGIIISDT VHDCNTTCQTPK
Sbjct  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCNTTCQTPK 300
Sbjct  241  EGRMDYYWTIVEPGDKITFEATGNLVVPRYAFELKRNSGSGIIISDTSVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 1,103: Line 1,640:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAADLKSTQNAI+ ITNKVNS+IEKMNTQFTAVGKEF+HLEKR
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNS+IEKMNTQFTAVGKEF+HLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAINGITNKVNSIIEKMNTQFTAVGKEFSHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSIIEKMNTQFTAVGKEFSHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKV+SQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVKSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKL RE+IDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+ CMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLTREKIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDMCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVLVVSLGAISFWMCSNGSLQCRICI
             LVL+VSLGAISFWMCSNGSLQCRICI
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  LVLIVSLGAISFWMCSNGSLQCRICI 566




>gb|ABR29565.1|  hemagglutinin [Influenza A virus (A/swine/Maryland/23239/1991(H1N1))]
>gb|ACE77934.1|  hemagglutinin [Influenza A virus (A/swine/Korea/PZ4/2006(H1N2))]
gb|ACI26604.1|  hemagglutinin [Influenza A virus (A/swine/Memphis/1/1990(H1N1))]
Length=566
Length=566


  Score = 1118 bits (2892),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1123 bits (2904),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 529/566 (93%), Positives = 551/566 (97%), Gaps = 0/566 (0%)
  Identities = 530/566 (93%), Positives = 555/566 (98%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Line 1,131: Line 1,667:


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLITASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFPKTSSWPNH++++GVTAACPHAG  SFYKNLIWLVKK NSYPK+SK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHNTDRGVTAACPHAGTSSFYKNLIWLVKKENSYPKISK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K KEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
             SYIN+KGKEVLVLWGIHHPS SADQ++LYQNADAYVFVGSSRYSKKF PEIA RPKVRDQ
Sbjct  181  SYINNKEKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240
Sbjct  181  SYINNKGKEVLVLWGIHHPSNSADQRTLYQNADAYVFVGSSRYSKKFTPEIATRPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
            GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
            EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 1,151: Line 1,687:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAADLKSTQNAI+ ITNKVNS+IEKMNTQFTAVGKEF+HLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAINGITNKVNSIIEKMNTQFTAVGKEFSHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKL RE+IDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLTREKIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVL+VSLGAISFWMCSNGSLQCRICI
             LVLVVSLGAISFWMCSNGSLQCRICI
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICI 566




>gb|ACF25596.1|  hemagglutinin [Influenza A virus (A/turkey/IA/21089-3/1992(H1N1))]
>gb|ACE77935.1|  hemagglutinin [Influenza A virus (A/swine/Korea/PZ7/2006(H1N2))]
gb|ACE77936.1|  hemagglutinin [Influenza A virus (A/swine/Korea/PZ14/2006(H1N2))]
Length=566
Length=566


  Score = 1118 bits (2891),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1122 bits (2903),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 528/566 (93%), Positives = 551/566 (97%), Gaps = 0/566 (0%)
  Identities = 529/566 (93%), Positives = 555/566 (98%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Line 1,178: Line 1,715:


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRG+APLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGIAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLITASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFP+TSSWPNH++++GVTAACPHAG  SFYKNLIWLVKK NSYPK+SK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPRTSSWPNHNTDRGVTAACPHAGTSSFYKNLIWLVKKENSYPKISK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K KEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
             SYIN+KGKEVLVLWGIHHPS SADQ++LYQNADAYVFVGSSRYSKKF PEIA RPKVRDQ
Sbjct  181  SYINNKEKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240
Sbjct  181  SYINNKGKEVLVLWGIHHPSNSADQRTLYQNADAYVFVGSSRYSKKFTPEIATRPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
            GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
            EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 1,198: Line 1,735:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAADLKSTQNAI+ ITNKVNS+IEKMNTQFTAVGKEF+HLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAINGITNKVNSIIEKMNTQFTAVGKEFSHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKL RE+IDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLTREKIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVL+VSLGAISFWMCSNGSLQCRICI
             LVLVVSLGAISFWMCSNGSLQCRICI
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICI 566




>gb|ABR29585.1|  hemagglutinin [Influenza A virus (A/swine/Wisconsin/1915/1988(H1N1))]
>gb|AAL87867.1|AF455677_1 hemagglutinin [Influenza A virus (A/Swine/North Carolina/93523/01
Length=566
(H1N2))]
Length=565


  Score = 1115 bits (2884),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1122 bits (2901),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 525/566 (92%), Positives = 551/566 (97%), Gaps = 0/566 (0%)
  Identities = 533/566 (94%), Positives = 553/566 (97%), Gaps = 1/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLLYTF  ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAILVVLLYTF TA ADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILVVLLYTFTTAKADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVET +SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETPNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFPKTS WPNHD+N+GVTAACPHAGA SFY+NLIWLV+K NSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKTS-WPNHDTNRGVTAACPHAGANSFYRNLIWLVEKENSYPKLSK 179


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+K KEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
             SYIN+K EVLVLWGIHHPSTSADQ+SLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ
Sbjct  181 SYVNNKEKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240
Sbjct  180 SYINNKEMEVLVLWGIHHPSTSADQRSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ 239


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
             GRMNYYWTLVEPGDKITFEATGNLVVPRYAFAM+R +GSGIIISDT VHDCNTTCQTPK
Sbjct  241 AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  240 AGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMKRGSGSGIIISDTSVHDCNTTCQTPK 299


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQN+HP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301 GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  300 GAINTSLPFQNVHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 359


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQG+GYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361 MIDGWYGYHHQNEQGTGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  360 MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 419


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421 IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Sbjct  420 IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  479


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481 CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  480 CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 539


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVL+VSLGAISFWMCSNGSLQCRICI
             LVLVVSLGAISFWMCSNGSLQCRICI
Sbjct  541 LVLLVSLGAISFWMCSNGSLQCRICI 566
Sbjct  540 LVLVVSLGAISFWMCSNGSLQCRICI 565




>gb|ACE77929.1|  hemagglutinin [Influenza A virus (A/swine/Korea/Hongsong2/2004(H1N2))]
>gb|ABW71521.1|  hemagglutinin [Influenza A virus (A/swine/Iowa/24297/1991(H1N1))]
Length=566
Length=566


  Score = 1114 bits (2882),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1121 bits (2900),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 527/566 (93%), Positives = 551/566 (97%), Gaps = 0/566 (0%)
  Identities = 530/566 (93%), Positives = 552/566 (97%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Line 1,272: Line 1,810:


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECESL  ASSWSYIVETS+ DNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLIAASSWSYIVETSNPDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPKTSSWPNHD+N+GVTAACP AG  SFYKNLIWLVKK NSYPK+SK
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTAACPLAGTNSFYKNLIWLVKKENSYPKISK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+KGKEVLVLWGIHHPS SADQ++LYQNADAYVFVGSSRYSKKF PEIA RPKVRDQ
             SYIN+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
Sbjct  181  SYINNKGKEVLVLWGIHHPSNSADQRTLYQNADAYVFVGSSRYSKKFTPEIATRPKVRDQ 240
Sbjct  181  SYINNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
            EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDCNTTCQTPK
            GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+ IG+CPKYVKSTKL++ATGLRNVPSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVXIGECPKYVKSTKLKMATGLRNVPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAADLKSTQNAI+ ITNKVNS+IEKMNTQFTAVGKEF+HLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAINGITNKVNSIIEKMNTQFTAVGKEFSHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQL+NNAKEIGNG
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLRNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKL RE+IDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLTREKIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVLVVSLGAISFWMCSNGSLQCRICI
             LVL+VSLGAISFWMCSNGSLQCRICI
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI 566




>gb|ABR29595.1|  hemagglutinin [Influenza A virus (A/swine/Iowa/17672/1988(H1N1))]
>gb|ACE77937.1|  hemagglutinin [Influenza A virus (A/swine/Korea/CY08/2007(H1N2))]
gb|ACD88703.1|  hemagglutinin [Influenza A virus (A/turkey/NC/19762/1988(H1N1))]
Length=566
Length=566


  Score = 1114 bits (2881),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1120 bits (2896),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 525/566 (92%), Positives = 550/566 (97%), Gaps = 0/566 (0%)
  Identities = 528/566 (93%), Positives = 554/566 (97%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLLYTF  ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLITASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFP+TSSWPNH++++GVTAACPHAG  SFYKNLIWLVKK NSYPK+SK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPRTSSWPNHNTDRGVTAACPHAGTSSFYKNLIWLVKKENSYPKISK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+K KEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
             SYIN+KGKEVLVLWGIHHPS SADQ++LYQNADAYVFVGSSRYSKKF PEIA RPKVR Q
Sbjct  181  SYVNNKEKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240
Sbjct  181  SYINNKGKEVLVLWGIHHPSNSADQRTLYQNADAYVFVGSSRYSKKFTPEIATRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
            GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
            EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 1,340: Line 1,877:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAADLKSTQNAI+ ITNKVNS+IEKMNTQFTAVGKEF+HLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAINGITNKVNSIIEKMNTQFTAVGKEFSHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKL RE+IDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLTREKIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVL+VSLGAISFWMCSNGSLQCRICI
             LVLVVSLGAISFWMCSNGSLQCRICI
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICI 566




>gb|ABU80400.1|  hemagglutinin [Influenza A virus (A/Ohio/3559/1988(H1N1))]
>gb|ABG34254.1|  hemagglutinin [Influenza A virus (A/swine/Korea/S11/2005(H1N2))]
Length=566
Length=566


  Score = 1113 bits (2880),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1119 bits (2894),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 525/566 (92%), Positives = 550/566 (97%), Gaps = 0/566 (0%)
  Identities = 527/566 (93%), Positives = 552/566 (97%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLLYTF  ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAILVVLLYTFATAN+DTLCIGYHANNSTDTVDT+LE+N+TVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILVVLLYTFATANSDTLCIGYHANNSTDTVDTILERNITVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNP CESL TASSWSYIVE S+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPGCESLFTASSWSYIVEKSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFPKTSSWPNHD+N+GVTA+CPHAG KSFY+NLIWLVKK NSYPK+SK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTASCPHAGTKSFYRNLIWLVKKENSYPKISK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+K KEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
             SYIN K KEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIA RPKVRDQ
Sbjct  181  SYVNNKEKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240
Sbjct  181  SYINSKEKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIATRPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
            GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
            EGRMNYYWT+VEPGDKITFEATGNLVVPRYA A++RN+GSGIIISDT VHD NT CQTPK
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  EGRMNYYWTIVEPGDKITFEATGNLVVPRYALALKRNSGSGIIISDTSVHDGNTACQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 1,387: Line 1,924:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID ITNKVNSVIEKMNTQFTAVGKEF+HLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFSHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLN+KVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNRKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREE+DGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEVDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVL+VSLGAISFWMCSNGSLQCRICI
             LVLVVSLGA SFWMCSNGSLQCRICI
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  LVLVVSLGATSFWMCSNGSLQCRICI 566




>gb|ACE77933.1|  hemagglutinin [Influenza A virus (A/swine/Korea/Asan04/2006(H1N2))]
>gb|ACE77931.1|  hemagglutinin [Influenza A virus (A/swine/Korea/JL02/2005(H1N2))]
Length=566
Length=566


  Score = 1113 bits (2879),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1118 bits (2893),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 526/566 (92%), Positives = 551/566 (97%), Gaps = 0/566 (0%)
  Identities = 528/566 (93%), Positives = 553/566 (97%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Line 1,414: Line 1,951:


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECESL ASSWSYIVETS+ DNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLIAASSWSYIVETSNPDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLITASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPKTSSWPNHD+N+GVTAACP AG SFYKNLIWL+KK NSYPK+SK
             QLSSVSSFERFEIFP+TSSWPNH++++GVTAACPHAG SFYKNLIWLVKK NSYPK+SK
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTAACPLAGTNSFYKNLIWLIKKENSYPKISK 180
Sbjct  121  QLSSVSSFERFEIFPRTSSWPNHNTDRGVTAACPHAGTSSFYKNLIWLVKKENSYPKISK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+KGKEVLVLWGIHHPS SADQ++LYQNADAYVFVGSSRYSKKF PEIA RPKVR Q
             SYIN+KGKEVLVLWGIHHPS SADQ +LYQNADAYVFVGSSRYSKKF PEIA RPKVR Q
Sbjct  181  SYINNKGKEVLVLWGIHHPSNSADQRTLYQNADAYVFVGSSRYSKKFTPEIATRPKVRGQ 240
Sbjct  181  SYINNKGKEVLVLWGIHHPSNSADQLTLYQNADAYVFVGSSRYSKKFTPEIATRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Line 1,430: Line 1,967:


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKL++ATGLRNVPSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLKMATGLRNVPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Line 1,438: Line 1,975:


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQL+NNAKEIGNG
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLRNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Line 1,450: Line 1,987:




>gb|ACE77932.1|  hemagglutinin [Influenza A virus (A/swine/Korea/JL04/2005(H1N2))]
>gb|ABR29565.1|  hemagglutinin [Influenza A virus (A/swine/Maryland/23239/1991(H1N1))]
gb|ACI26604.1|  hemagglutinin [Influenza A virus (A/swine/Memphis/1/1990(H1N1))]
Length=566
Length=566


  Score = 1113 bits (2879),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1118 bits (2892),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 527/566 (93%), Positives = 551/566 (97%), Gaps = 0/566 (0%)
  Identities = 529/566 (93%), Positives = 551/566 (97%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Line 1,461: Line 1,999:


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECESL  ASSWSYIVETS+ DNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLIAASSWSYIVETSNPDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPKTSSWPNHD+N+GVTAACP AG  SFYKNLIWLVKK NSYPK+SK
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTAACPLAGTNSFYKNLIWLVKKENSYPKISK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+KGKEVLVLWGIHHPS SADQ++LYQNADAYVFV SSRYSKKF PEIA RPKVRDQ
             SYIN+K KEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
Sbjct  181  SYINNKGKEVLVLWGIHHPSNSADQRTLYQNADAYVFVESSRYSKKFTPEIATRPKVRDQ 240
Sbjct  181  SYINNKEKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
            EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDCNTTCQTPK
            GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKL++ATGLRNVPSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLKMATGLRNVPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAADLKSTQNAI+ ITNKVNS+IEKMNTQFTAVGKEF+HLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAINGITNKVNSIIEKMNTQFTAVGKEFSHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQL+NNAKEIGNG
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLRNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKL RE+IDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLTREKIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVLVVSLGAISFWMCSNGSLQCRICI
             LVL+VSLGAISFWMCSNGSLQCRICI
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI 566




>gb|ACE77930.1|  hemagglutinin [Influenza A virus (A/swine/Korea/JL01/2005(H1N2))]
>gb|ACF25596.1|  hemagglutinin [Influenza A virus (A/turkey/IA/21089-3/1992(H1N1))]
Length=566
Length=566


  Score = 1113 bits (2879),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1118 bits (2891),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 527/566 (93%), Positives = 550/566 (97%), Gaps = 0/566 (0%)
  Identities = 528/566 (93%), Positives = 551/566 (97%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Line 1,508: Line 2,046:


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECESL  ASSWSYIVETS+ DNGTCYPGDFI+YEELRE
             LRG+APLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLIAASSWSYIVETSNPDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGIAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPKTSSWPNHD+N+GVTAACP AG  SFYKNLIWLVKK NSYPK+SK
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTAACPLAGTNSFYKNLIWLVKKENSYPKISK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+KGKEVLVLWGIHHPS SADQ +LYQNADAYVFVGSSRYSKKF PEI  RPKVRDQ
             SYIN+K KEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
Sbjct  181  SYINNKGKEVLVLWGIHHPSNSADQLTLYQNADAYVFVGSSRYSKKFTPEITTRPKVRDQ 240
Sbjct  181  SYINNKEKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
            EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDCNTTCQTPK
            GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKL++ATGLRNVPSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLKMATGLRNVPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAADLKSTQNAI+ ITNKVNS+IEKMNTQFTAVGKEF+HLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAINGITNKVNSIIEKMNTQFTAVGKEFSHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQL+NNAKEIGNG
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLRNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKL RE+IDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLTREKIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVLVVSLGAISFWMCSNGSLQCRICI
             LVL+VSLGAISFWMCSNGSLQCRICI
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI 566




>gb|AAA43283.1|  hemagglutinin [Influenza A virus (A/MD/12/1991(H1N1))]
>gb|ABR29585.1|  hemagglutinin [Influenza A virus (A/swine/Wisconsin/1915/1988(H1N1))]
Length=566
Length=566


  Score = 1113 bits (2879),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1115 bits (2884),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 524/566 (92%), Positives = 550/566 (97%), Gaps = 0/566 (0%)
  Identities = 525/566 (92%), Positives = 551/566 (97%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Line 1,555: Line 2,093:


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWP+H++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPDHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Line 1,575: Line 2,113:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQG+GYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGTGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Line 1,591: Line 2,129:




>gb|AAB03291.1|  hemagglutinin [Influenza A virus (A/WI/4754/1994(H1N1))]
>gb|ACE77929.1|  hemagglutinin [Influenza A virus (A/swine/Korea/Hongsong2/2004(H1N2))]
gb|AAB03292.1|  hemagglutinin [Influenza A virus (A/WI/4755/1994(H1N1))]
Length=566
Length=566


  Score = 1112 bits (2877),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1114 bits (2882),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 525/566 (92%), Positives = 549/566 (96%), Gaps = 0/566 (0%)
  Identities = 527/566 (93%), Positives = 551/566 (97%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLLYTF  ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL  ASSWSYIVETS+ DNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLIAASSWSYIVETSNPDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFPKTSSWPNHD+N+GVTAACP AG  SFYKNLIWLVKK NSYPK+SK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTAACPLAGTNSFYKNLIWLVKKENSYPKISK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+K KEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
             SYIN+KGKEVLVLWGIHHPS SADQ++LYQNADAYVFVGSSRYSKKF PEIA RPKVRDQ
Sbjct  181  SYVNNKEKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240
Sbjct  181  SYINNKGKEVLVLWGIHHPSNSADQRTLYQNADAYVFVGSSRYSKKFTPEIATRPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
            GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
            EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+ IG+CPKYVKSTKL++ATGLRNVPSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVXIGECPKYVKSTKLKMATGLRNVPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAADLKSTQNAI+ ITNKVNS+IEKMNTQFTAVGKEF+HLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAINGITNKVNSIIEKMNTQFTAVGKEFSHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQL+NNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLRNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKL RE+IDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLTREKIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVL VSLGAISFWMCSNGSLQCRICI
             LVLVVSLGAISFWMCSNGSLQCRICI
Sbjct  541  LVLSVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICI 566




>gb|ABY84684.1|  hemagglutinin [Influenza A virus (A/swine/California/T9001707/1991(H1N1))]
>gb|ABR29595.1|  hemagglutinin [Influenza A virus (A/swine/Iowa/17672/1988(H1N1))]
gb|ACD88703.1|  hemagglutinin [Influenza A virus (A/turkey/NC/19762/1988(H1N1))]
Length=566
Length=566


  Score = 1112 bits (2876),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1114 bits (2881),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 527/566 (93%), Positives = 549/566 (96%), Gaps = 0/566 (0%)
  Identities = 525/566 (92%), Positives = 550/566 (97%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILVVLLYT TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAIL+VLLYTF ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILVVLLYTVTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Line 1,654: Line 2,192:


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKK NSYPKLSK
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKENSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K KEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
             SY+N+K KEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
Sbjct  181  SYINNKEKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240
Sbjct  181  SYVNNKEKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Line 1,678: Line 2,216:


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 1,686: Line 2,224:




>gb|AAF87280.1|AF222032_1 hemagglutinin [Influenza A virus (A/Swine/Wisconsin/235/97(H1N1))]
>gb|ABU80400.1|  hemagglutinin [Influenza A virus (A/Ohio/3559/1988(H1N1))]
gb|AAF87281.1|AF222033_1  hemagglutinin [Influenza A virus (A/Swine/Wisconsin/238/97(H1N1))]
Length=566
Length=566


  Score = 1112 bits (2876),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1113 bits (2880),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 523/566 (92%), Positives = 550/566 (97%), Gaps = 0/566 (0%)
  Identities = 525/566 (92%), Positives = 550/566 (97%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAIL+VLLYTF  ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             L+G+APLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LKGIAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+GVT+ACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTSACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+KGK+VLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKF PEIA RPKVR Q
             SY+N+K KEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
Sbjct  181  SYINNKGKKVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFMPEIATRPKVRGQ 240
Sbjct  181  SYVNNKEKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAMER  GSGIIISDTPVHDCNTTCQTPK
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMERGYGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 1,722: Line 2,259:


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKV+SQLKNNAKEIGNG
             IENLN+KVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVKSQLKNNAKEIGNG 480
Sbjct  421  IENLNRKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYST+ASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTIASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 1,734: Line 2,271:




>gb|ABR29575.1|  hemagglutinin [Influenza A virus (A/swine/Kansas/3228/1987(H1N1))]
>gb|ACE77933.1|  hemagglutinin [Influenza A virus (A/swine/Korea/Asan04/2006(H1N2))]
gb|ABU80420.1|  hemagglutinin [Influenza A virus (A/swine/Kansas/3024/1987(H1N1))]
Length=566
Length=566


  Score = 1112 bits (2875),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1113 bits (2879),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 523/566 (92%), Positives = 549/566 (96%), Gaps = 0/566 (0%)
  Identities = 526/566 (92%), Positives = 551/566 (97%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLLYTF  ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRG+APLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL  ASSWSYIVETS+ DNGTCYPGDFI+YEELRE
Sbjct  61  LRGIAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLIAASSWSYIVETSNPDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFPKTSSWPNHD+N+GVTAACP AG  SFYKNLIWL+KK NSYPK+SK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTAACPLAGTNSFYKNLIWLIKKENSYPKISK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+K KEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
             SYIN+KGKEVLVLWGIHHPS SADQ++LYQNADAYVFVGSSRYSKKF PEIA RPKVR Q
Sbjct  181  SYVNNKEKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240
Sbjct  181  SYINNKGKEVLVLWGIHHPSNSADQRTLYQNADAYVFVGSSRYSKKFTPEIATRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
            GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTPVHDCNTTCQTPK
            EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKL++ATGLRNVPSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLKMATGLRNVPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAADLKSTQNAI+ ITNKVNS+IEKMNTQFTAVGKEF+HLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAINGITNKVNSIIEKMNTQFTAVGKEFSHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQL+NNAKEIGNG
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQL+NNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLRNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLRNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKL RE+IDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLTREKIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVL+VSLGAISFWMCSNGSLQCRICI
             LVLVVSLGAISFWMCSNGSLQCRICI
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICI 566




>gb|ACN50264.1|  hemagglutinin [Influenza A virus (A/swine/Shanghai/3/2005(H1N1))]
>gb|ACE77932.1|  hemagglutinin [Influenza A virus (A/swine/Korea/JL04/2005(H1N2))]
Length=566
Length=566


  Score = 1111 bits (2874),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1113 bits (2879),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 524/566 (92%), Positives = 550/566 (97%), Gaps = 0/566 (0%)
  Identities = 527/566 (93%), Positives = 551/566 (97%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILV LLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILVFLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL  ASSWSYIVETS+ DNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLIAASSWSYIVETSNPDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFE+FPK+SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKK NSYPKLSK
             QLSSVSSFERFEIFPKTSSWPNHD+N+GVTAACP AG  SFYKNLIWLVKK NSYPK+SK
Sbjct  121  QLSSVSSFERFEMFPKSSSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKENSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTAACPLAGTNSFYKNLIWLVKKENSYPKISK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K KEVLVLWGIHHP TSADQQSLYQNADAYVFVGSS+Y+KKF+PEIA RPKVR Q
             SYIN+KGKEVLVLWGIHHPS SADQ++LYQNADAYVFV SSRYSKKF PEIA RPKVRDQ
Sbjct  181  SYINNKEKEVLVLWGIHHPPTSADQQSLYQNADAYVFVGSSKYNKKFRPEIAARPKVRGQ 240
Sbjct  181  SYINNKGKEVLVLWGIHHPSNSADQRTLYQNADAYVFVESSRYSKKFTPEIATRPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
            GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
            EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKST LR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKL++ATGLRNVPSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTNLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLKMATGLRNVPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAADLKSTQNAI+ ITNKVNS+IEKMNTQFTAVGKEF+HLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAINGITNKVNSIIEKMNTQFTAVGKEFSHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDG LD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQL+NNAKEIGNG
Sbjct  421  IENLNKKVDDGLLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLRNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESV+NGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKL RE+IDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVRNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLTREKIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVL+VSLGAISFWMCSNGSLQCRICI
             LVLVVSLGAISFWMCSNGSLQCRICI
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICI 566




>gb|ACI41022.1|  hemagglutinin [Influenza A virus (A/turkey/NC/17026/1988(H1N1))]
>gb|ACE77930.1|  hemagglutinin [Influenza A virus (A/swine/Korea/JL01/2005(H1N2))]
Length=566
Length=566


  Score = 1111 bits (2874),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1113 bits (2879),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 524/566 (92%), Positives = 549/566 (96%), Gaps = 0/566 (0%)
  Identities = 527/566 (93%), Positives = 550/566 (97%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLLYTF  ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL  ASSWSYIVETS+ DNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLIAASSWSYIVETSNPDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKK NSYPKLSK
             QLSSVSSFERFEIFPKTSSWPNHD+N+GVTAACP AG  SFYKNLIWLVKK NSYPK+SK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKENSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHDTNRGVTAACPLAGTNSFYKNLIWLVKKENSYPKISK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+K KEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
             SYIN+KGKEVLVLWGIHHPS SADQ +LYQNADAYVFVGSSRYSKKF PEI  RPKVRDQ
Sbjct  181  SYVNNKEKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240
Sbjct  181  SYINNKGKEVLVLWGIHHPSNSADQLTLYQNADAYVFVGSSRYSKKFTPEITTRPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
            GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
            EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFA++RN+GSGIIISDT VHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFALKRNSGSGIIISDTSVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKL++ATGLRNVPSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLKMATGLRNVPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAADLKSTQNAI+ ITNKVNS+IEKMNTQFTAVGKEF+HLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAINGITNKVNSIIEKMNTQFTAVGKEFSHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQL+NNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLRNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKL RE+IDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLTREKIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVL+VSLGAISFWMCSNGSLQCRICI
             LVLVVSLGAISFWMCSNGSLQCRICI
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  LVLVVSLGAISFWMCSNGSLQCRICI 566




>gb|AAY56898.1|  hemagglutinin [Influenza A virus (A/swine/Guangdong/2/01(H1N1))]
>gb|AAA43283.1|  hemagglutinin [Influenza A virus (A/MD/12/1991(H1N1))]
gb|ACA25338.1|  hemagglutinin [Influenza A virus (A/swine/Shanghai/2/2005(H1N1))]
Length=566
Length=566


  Score = 1110 bits (2872),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1113 bits (2879),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 524/566 (92%), Positives = 550/566 (97%), Gaps = 0/566 (0%)
  Identities = 524/566 (92%), Positives = 550/566 (97%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILV LLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAIL+VLLYTF  ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILVFLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Line 1,892: Line 2,427:


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFE+FPK+SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKK NSYPKLSK
             QLSSVSSFERFEIFPK SSWP+H++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEMFPKSSSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKENSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPDHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K KEVLVLWGIHHP TSADQQSLYQNADAYVFVGSS+Y+KKF+PEIA RPKVR Q
             SY+N+K KEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
Sbjct  181  SYINNKEKEVLVLWGIHHPPTSADQQSLYQNADAYVFVGSSKYNKKFRPEIAARPKVRGQ 240
Sbjct  181  SYVNNKEKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  TGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKST LR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTNLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDG LD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGLLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESV+NGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVRNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 1,924: Line 2,459:




>gb|AAF87276.1|AF222028_1 hemagglutinin [Influenza A virus (A/Swine/Wisconsin/163/97(H1N1))]
>gb|AAB03291.1|  hemagglutinin [Influenza A virus (A/WI/4754/1994(H1N1))]
gb|AAF87279.1|AF222031_1  hemagglutinin [Influenza A virus (A/Swine/Wisconsin/168/97(H1N1))]
  gb|AAB03292.1|  hemagglutinin [Influenza A virus (A/WI/4755/1994(H1N1))]
  gb|AAF87282.1|AF222034_1 hemagglutinin [Influenza A virus (A/Swine/Wisconsin/457/98(H1N1))]
Length=566
Length=566


  Score = 1110 bits (2872),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1112 bits (2877),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 522/566 (92%), Positives = 550/566 (97%), Gaps = 0/566 (0%)
  Identities = 525/566 (92%), Positives = 549/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Line 1,937: Line 2,471:


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRG+APLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGIAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Line 1,945: Line 2,479:


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K KEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
             SY+N+K KEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
Sbjct  181  SYINNKEKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIASRPKVRGQ 240
Sbjct  181  SYVNNKEKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRM+YYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  AGRMDYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 1,957: Line 2,491:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID +TNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGVTNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Line 1,969: Line 2,503:


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             L+L+VSLGAISFWMCSNGSLQCRICI
             LVL VSLGAISFWMCSNGSLQCRICI
Sbjct  541  LILLVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  LVLSVSLGAISFWMCSNGSLQCRICI 566




>gb|AAA19934.1|  hemagglutinin [Influenza A virus (A/swine/St-Hyacinthe/106/1991(H1))]
>gb|ABY84684.1|  hemagglutinin [Influenza A virus (A/swine/California/T9001707/1991(H1N1))]
Length=566
Length=566


  Score = 1110 bits (2872),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1112 bits (2876),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 516/566 (91%), Positives = 550/566 (97%), Gaps = 0/566 (0%)
  Identities = 527/566 (93%), Positives = 549/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLLYTF ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAILVVLLYT TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILVVLLYTVTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRG+APLHLGKCNIAGW+LGNPECESLST SSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGIAPLHLGKCNIAGWLLGNPECESLSTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+G TAACP+AGA SFY+NLIWLVKKGNSYPKL+K
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKK NSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGTTAACPYAGANSFYRNLIWLVKKGNSYPKLNK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKENSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+KGKEVLVLWGIHHPSTS +QQSLYQNAD YVFVGSS+Y+KKFKPEIA RPKVRDQ
             SYIN+K KEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
Sbjct  181  SYVNNKGKEVLVLWGIHHPSTSNEQQSLYQNADTYVFVGSSKYNKKFKPEIATRPKVRDQ 240
Sbjct  181  SYINNKEKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTPVHDCNTTCQTPK
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQN+HP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNVHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYH+CDN CMESVKNGTYDYPKYSEE++LNREEIDG+KL+STRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHRCDNACMESVKNGTYDYPKYSEESRLNREEIDGIKLDSTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 2,020: Line 2,554:




>sp|P26140.1|HEMA_I88A6  RecName: Full=Hemagglutinin; Contains: RecName: Full=Hemagglutinin
>gb|AAF87280.1|AF222032_1 hemagglutinin [Influenza A virus (A/Swine/Wisconsin/235/97(H1N1))]
HA1 chain; Contains: RecName: Full=Hemagglutinin HA2 chain;
  gb|AAF87281.1|AF222033_1 hemagglutinin [Influenza A virus (A/Swine/Wisconsin/238/97(H1N1))]
Flags: Precursor
Length=566
pir||HMIV17 hemagglutinin precursor - influenza A virus (strain A/Swine/  
 
Indiana/1726/88 [H1N1])
  Score = 1112 bits (2876),  Expect = 0.0, Method: Compositional matrix adjust.
  gb|ABF71860.1|  haemagglutinin [Influenza A virus (A/Swine/Indiana/1726/1988(H1N1))]
  Identities = 523/566 (92%), Positives = 550/566 (97%), Gaps = 0/566 (0%)
Length=566
 
  Score = 1110 bits (2872),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 524/566 (92%), Positives = 548/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLLYTF  ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             L+G+APLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LKGIAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFPK SSWPNH++N+GVT+ACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTSACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+K KEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
             SYIN+KGK+VLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKF PEIA RPKVR Q
Sbjct  181  SYVNNKEKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240
Sbjct  181  SYINNKGKKVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFMPEIATRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAMER  GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMERGYGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 2,060: Line 2,590:


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKV+SQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVKSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYP YSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYST+ASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPNYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTIASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVL VSLGAISFWMCSNGSLQCRICI
             LVL+VSLGAISFWMCSNGSLQCRICI
Sbjct  541  LVLSVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI 566




>gb|ABS50121.1|  hemagglutinin [Influenza A virus (A/swine/Iowa/31483/1988(H1N1))]
>gb|ABR29575.1|  hemagglutinin [Influenza A virus (A/swine/Kansas/3228/1987(H1N1))]
gb|ABU80420.1|  hemagglutinin [Influenza A virus (A/swine/Kansas/3024/1987(H1N1))]
Length=566
Length=566


  Score = 1110 bits (2870),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1112 bits (2875),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 522/566 (92%), Positives = 549/566 (96%), Gaps = 0/566 (0%)
  Identities = 523/566 (92%), Positives = 549/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Line 2,083: Line 2,614:


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRG+APLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGIAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKK NSYPKLSK
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKENSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Line 2,095: Line 2,626:


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 2,103: Line 2,634:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNA+D ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAVDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLN+KVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQL+NNAKEIGNG
Sbjct  421  IENLNRKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLRNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Line 2,119: Line 2,650:




>gb|ABR29605.1|  hemagglutinin [Influenza A virus (A/swine/Iowa/3/1985(H1N1))]
>gb|ACN50264.1|  hemagglutinin [Influenza A virus (A/swine/Shanghai/3/2005(H1N1))]
gb|ABR29615.1|  hemagglutinin [Influenza A virus (A/swine/Iowa/1/1985(H1N1))]
gb|ABW86596.1|  hemagglutinin [Influenza A virus (A/swine/Iowa/2/1985(H1N1))]
Length=566
Length=566


  Score = 1110 bits (2870),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1111 bits (2874),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 522/566 (92%), Positives = 549/566 (96%), Gaps = 0/566 (0%)
  Identities = 524/566 (92%), Positives = 550/566 (97%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLLYTF  ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAILV LLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILVFLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             L G+APLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFE+FPK+SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKK NSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEMFPKSSSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKENSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
             SYIN+K KEVLVLWGIHHP TSADQQSLYQNADAYVFVGSS+Y+KKF+PEIA RPKVR Q
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240
Sbjct  181  SYINNKEKEVLVLWGIHHPPTSADQQSLYQNADAYVFVGSSKYNKKFRPEIAARPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTPVHDCNTTCQTPK
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKST LR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTNLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Line 2,156: Line 2,685:


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
             IENLNKKVDDG LD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGLLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESV+NGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVRNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 2,168: Line 2,697:




>gb|ABS50111.1|  hemagglutinin [Influenza A virus (A/swine/Iowa/1/1987(H1N1))]
>gb|ACI41022.1|  hemagglutinin [Influenza A virus (A/turkey/NC/17026/1988(H1N1))]
Length=566
Length=566


  Score = 1109 bits (2868),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1111 bits (2874),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 521/566 (92%), Positives = 549/566 (96%), Gaps = 0/566 (0%)
  Identities = 524/566 (92%), Positives = 549/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Line 2,179: Line 2,708:


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRG+APLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGIAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKK NSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKENSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Line 2,191: Line 2,720:


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTPVHDCNTTCQTP+
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDTPVHDCNTTCQTPE 300
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 2,203: Line 2,732:


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQL+NNAKEIGNG
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLRNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYST+ASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTIASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 2,215: Line 2,744:




>gb|ABK57092.1|  hemagglutinin [Influenza A virus (A/Philippines/344/2004(H1N2))]
>gb|AAY56898.1|  hemagglutinin [Influenza A virus (A/swine/Guangdong/2/01(H1N1))]
gb|ACA25338.1|  hemagglutinin [Influenza A virus (A/swine/Shanghai/2/2005(H1N1))]
Length=566
Length=566


  Score = 1109 bits (2868),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1110 bits (2872),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 519/566 (91%), Positives = 548/566 (96%), Gaps = 0/566 (0%)
  Identities = 524/566 (92%), Positives = 550/566 (97%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKA LVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE+KHNGKLCK
             MKAILV LLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKATLVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENKHNGKLCK 60
Sbjct  1    MKAILVFLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECE L TA SWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLLTARSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWL KKGNSYPKLSK
             QLSSVSSFERFE+FPK+SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKK NSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLTKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEMFPKSSSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKENSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVG+S+Y+KKF PEIA RPKVRDQ
             SYIN+K KEVLVLWGIHHP TSADQQSLYQNADAYVFVGSS+Y+KKF+PEIA RPKVR Q
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGTSKYNKKFNPEIATRPKVRDQ 240
Sbjct  181  SYINNKEKEVLVLWGIHHPPTSADQQSLYQNADAYVFVGSSKYNKKFRPEIAARPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM+R +GSGIIISD PVHDCNTTCQTP+
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDAPVHDCNTTCQTPR 300
Sbjct  241  TGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQN+HP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKST LR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNVHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTNLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLN+KVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDG LD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNRKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGLLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYP+YSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESV+NGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPRYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVRNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 2,262: Line 2,792:




>gb|AAF87278.1|AF222030_1 hemagglutinin [Influenza A virus (A/Swine/Wisconsin/166/97(H1N1))]
>gb|AAF87276.1|AF222028_1 hemagglutinin [Influenza A virus (A/Swine/Wisconsin/163/97(H1N1))]
gb|AAF87279.1|AF222031_1  hemagglutinin [Influenza A virus (A/Swine/Wisconsin/168/97(H1N1))]
gb|AAF87282.1|AF222034_1  hemagglutinin [Influenza A virus (A/Swine/Wisconsin/457/98(H1N1))]
Length=566
Length=566


  Score = 1109 bits (2868),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1110 bits (2872),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 521/566 (92%), Positives = 549/566 (96%), Gaps = 0/566 (0%)
  Identities = 522/566 (92%), Positives = 550/566 (97%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Line 2,297: Line 2,829:


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENER LDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERALDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Line 2,309: Line 2,841:




>gb|AAL87869.1|AF455679_1 hemagglutinin [Influenza A virus (A/Swine/Iowa/930/01(H1N2))]
>gb|AAA19934.1|  hemagglutinin [Influenza A virus (A/swine/St-Hyacinthe/106/1991(H1))]
Length=566
Length=566


  Score = 1108 bits (2867),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1110 bits (2872),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 524/566 (92%), Positives = 549/566 (96%), Gaps = 0/566 (0%)
  Identities = 516/566 (91%), Positives = 550/566 (97%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILVVLLYTF TA+ADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE+KHNGKLCK
             MKAIL+VLLYTF  ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILVVLLYTFTTADADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENKHNGKLCK 60
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVET +SDNGTCYPGDFI+YEELRE
             LRG+APLHLGKCNIAGW+LGNPECESLST SSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETPNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGIAPLHLGKCNIAGWLLGNPECESLSTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
            LSSVSSFERFEIFPK +SWPNHD+NKGVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
            QLSSVSSFERFEIFPK SSWPNH++N+G TAACP+AGA SFY+NLIWLVKKGNSYPKL+K
Sbjct  121  HLSSVSSFERFEIFPKANSWPNHDTNKGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGTTAACPYAGANSFYRNLIWLVKKGNSYPKLNK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K KEVLV+WGIHHP TS DQQ+LYQNADAYVFVGSS+YSK+FKPEIA RPKVRDQ
             SY+N+KGKEVLVLWGIHHPSTS +QQSLYQNAD YVFVGSS+Y+KKFKPEIA RPKVRDQ
Sbjct  181  SYINNKKKEVLVIWGIHHPPTSTDQQTLYQNADAYVFVGSSKYSKRFKPEIAERPKVRDQ 240
Sbjct  181  SYVNNKGKEVLVLWGIHHPSTSNEQQSLYQNADTYVFVGSSKYNKKFKPEIATRPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQN+HP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNVHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVN VIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNPVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IE+LN KVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
Sbjct  421  IESLNNKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYH+CDN CMESVKNGTYDYPKYSEE++LNREEIDG+KL+STRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHRCDNACMESVKNGTYDYPKYSEESRLNREEIDGIKLDSTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 2,356: Line 2,888:




>gb|AAF87277.1|AF222029_1 hemagglutinin [Influenza A virus (A/Swine/Wisconsin/164/97(H1N1))]
>sp|P26140.1|HEMA_I88A6  RecName: Full=Hemagglutinin; Contains: RecName: Full=Hemagglutinin
Length=566
HA1 chain; Contains: RecName: Full=Hemagglutinin HA2 chain;
 
Flags: Precursor
  Score = 1108 bits (2867),  Expect = 0.0, Method: Compositional matrix adjust.
pir||HMIV17  hemagglutinin precursor - influenza A virus (strain A/Swine/
  Identities = 521/566 (92%), Positives = 550/566 (97%), Gaps = 0/566 (0%)
Indiana/1726/88 [H1N1])
gb|ABF71860.1|  haemagglutinin [Influenza A virus (A/Swine/Indiana/1726/1988(H1N1))]
Length=566
 
  Score = 1110 bits (2872),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 524/566 (92%), Positives = 548/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Line 2,367: Line 2,904:


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRG+APLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGIAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWP+H++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPDHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K KEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
             SY+N+K KEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
Sbjct  181  SYINNKEKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIASRPKVRGQ 240
Sbjct  181  SYVNNKEKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRM+YYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  AGRMDYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 2,387: Line 2,924:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID +TNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGVTNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Line 2,395: Line 2,932:


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYP YSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPNYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             L+L+VSLGAISFWMCSNGSLQCRICI
             LVL VSLGAISFWMCSNGSLQCRICI
Sbjct  541  LILLVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  LVLSVSLGAISFWMCSNGSLQCRICI 566




>gb|AAN46827.1|  hemagglutinin [Influenza A virus (A/Swine/Korea/CY02/02(H1N2))]
>gb|ABS50121.1|  hemagglutinin [Influenza A virus (A/swine/Iowa/31483/1988(H1N1))]
Length=566
Length=566


  Score = 1108 bits (2866),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1110 bits (2870),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 522/566 (92%), Positives = 548/566 (96%), Gaps = 0/566 (0%)
  Identities = 522/566 (92%), Positives = 549/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILVVLLYTF TA+ADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE+KHNGKLCK
             MKAIL+VLLYTF  ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILVVLLYTFTTADADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENKHNGKLCK 60
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
            LSSVSSFERFEIFPK +SWPNHD+NKGVTAACPHAGA SFY+NLIWLVKK NSYPKLSK
            QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKK NSYPKLSK
Sbjct  121  HLSSVSSFERFEIFPKVNSWPNHDTNKGVTAACPHAGANSFYRNLIWLVKKENSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKENSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K KEVLV+WGIHHP TS DQQ+LYQNADAYVFVGSS+YS++FKPEIA RPKVRDQ
             SY+N+K KEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
Sbjct  181  SYINNKKKEVLVIWGIHHPPTSTDQQALYQNADAYVFVGSSKYSRRFKPEIAARPKVRDQ 240
Sbjct  181  SYVNNKEKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQS+GLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSKGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSV+EKMNTQFTAVGKEFN LEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNA+D ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVVEKMNTQFTAVGKEFNQLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAVDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IE LN KVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLN+KVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IEGLNNKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNRKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 2,450: Line 2,987:




>gb|ABB86946.1|  hemagglutinin [Influenza A virus (A/swine/Ontario/11112/04(H1N1))]
>gb|ABR29605.1|  hemagglutinin [Influenza A virus (A/swine/Iowa/3/1985(H1N1))]
gb|ABR29615.1|  hemagglutinin [Influenza A virus (A/swine/Iowa/1/1985(H1N1))]
gb|ABW86596.1|  hemagglutinin [Influenza A virus (A/swine/Iowa/2/1985(H1N1))]
Length=566
Length=566


  Score = 1108 bits (2866),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1110 bits (2870),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 516/566 (91%), Positives = 549/566 (96%), Gaps = 0/566 (0%)
  Identities = 522/566 (92%), Positives = 549/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Line 2,461: Line 3,000:


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRG+APLHLGKCNIAGW+LGNPECESLST SSWSYIVETS+SDNGTCYPGDFI+YEELRE
             L G+APLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGIAPLHLGKCNIAGWLLGNPECESLSTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+G TAACP+AGA SFY+NLIWLVKKGNSYPKL+K
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGTTAACPYAGANSFYRNLIWLVKKGNSYPKLNK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+KGKEVLVLWGIHHPSTS +QQSLYQNAD YVFVGSS+Y+KKFKPEIA RPKVRDQ
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
Sbjct  181  SYVNNKGKEVLVLWGIHHPSTSNEQQSLYQNADTYVFVGSSKYNKKFKPEIATRPKVRDQ 240
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTPVHDCNTTCQTPK
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQN+HP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNVHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+ CMESVKNGTYDYPKYSEE++LNREEIDG+KL+STRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDACMESVKNGTYDYPKYSEESRLNREEIDGIKLDSTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
            VL+VSLGAISFWMCSNGSLQCRICI
            LVL+VSLGAISFWMCSNGSLQCRICI
Sbjct  541  SVLLVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI 566




>gb|ABV25638.1|  hemagglutinin [Influenza A virus (A/swine/Minnesota/37866/1999(H1N1))]
>gb|ABS50111.1|  hemagglutinin [Influenza A virus (A/swine/Iowa/1/1987(H1N1))]
Length=566
Length=566


  Score = 1108 bits (2865),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1109 bits (2868),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 522/566 (92%), Positives = 549/566 (96%), Gaps = 0/566 (0%)
  Identities = 521/566 (92%), Positives = 549/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILVVLLY F TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE+KHNGKLCK
             MKAIL+VLLYTF  ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILVVLLYAFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEEKHNGKLCK 60
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGWILGNPECESL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRG+APLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWILGNPECESLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGIAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPN+++++GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNYETSRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K KEVLVLWGIHHPSTS DQQSLYQNADAYVFVGSS+YSKKFKPEIA RPKVRDQ
             SY+N+K KEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
Sbjct  181  SYINNKEKEVLVLWGIHHPSTSTDQQSLYQNADAYVFVGSSKYSKKFKPEIATRPKVRDQ 240
Sbjct  181  SYVNNKEKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDT VHDCNT CQTPK
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTPVHDCNTTCQTP+
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTSVHDCNTNCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDTPVHDCNTTCQTPE 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKS KLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSKKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQ+AID ITNKVNS+IEKMN+QFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQSAIDGITNKVNSIIEKMNSQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLN+KVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQL+NNAKEIGNG
Sbjct  421  IENLNRKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLRNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLEST +YQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYST+ASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTEVYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTIASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 2,544: Line 3,083:




>gb|ABV25640.1|  hemagglutinin [Influenza A virus (A/swine/North Carolina/36883/2002(H1N1))]
>gb|ABK57092.1|  hemagglutinin [Influenza A virus (A/Philippines/344/2004(H1N2))]
Length=566
Length=566


  Score = 1106 bits (2861),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1109 bits (2868),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 522/566 (92%), Positives = 548/566 (96%), Gaps = 0/566 (0%)
  Identities = 519/566 (91%), Positives = 548/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MK ILVVLLYTF TA+ADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE+KHNGKLCK
             MKA LVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE+KHNGKLCK
Sbjct  1    MKTILVVLLYTFTTADADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENKHNGKLCK 60
Sbjct  1    MKATLVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENKHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECE L TA SWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLLTARSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
            LSSVSSFERFEIFPK +SWPNHD++KGVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
            QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWL KKGNSYPKLSK
Sbjct  121  HLSSVSSFERFEIFPKANSWPNHDTDKGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLTKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K KEVLV+WGIHHP TS DQQ+LYQNADAYVFVGSS+YSK+FKPEIA RPKVRDQ
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVG+S+Y+KKF PEIA RPKVRDQ
Sbjct  181  SYINNKKKEVLVIWGIHHPPTSTDQQTLYQNADAYVFVGSSKYSKEFKPEIAARPKVRDQ 240
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGTSKYNKKFNPEIATRPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM+R +GSGIIISD PVHDCNTTCQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM+R +GSGIIISD PVHDCNTTCQTP+
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDKPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDAPVHDCNTTCQTPR 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQN+HP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNVHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFN LEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNQLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IE+LN KVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLN+KVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IESLNNKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNRKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYP+YSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPRYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 2,591: Line 3,130:




>gb|AAL29712.1|  hemagglutinin [Influenza A virus (A/SW/MO/1877/01(H1N2))]
>gb|AAF87278.1|AF222030_1 hemagglutinin [Influenza A virus (A/Swine/Wisconsin/166/97(H1N1))]
Length=566
Length=566


  Score = 1106 bits (2861),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1109 bits (2868),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 521/566 (92%), Positives = 549/566 (96%), Gaps = 0/566 (0%)
  Identities = 521/566 (92%), Positives = 549/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILVVLLYTF TA+ADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE+KHNGKLCK
             MKAIL+VLLYTF  ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILVVLLYTFTTADADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENKHNGKLCK 60
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVET +SDNGTCYPGDFI+YEELRE
             LRG+APLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETPNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGIAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
            LSSVSSFERFEIFPK +SWPNHD+NKGVTAACP+AGA SFY+NLIWLVKKG+SYPKLSK
            QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  HLSSVSSFERFEIFPKANSWPNHDTNKGVTAACPYAGASSFYRNLIWLVKKGDSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K KEVLV+WGIHHP TS DQQ+LYQNADAYVFVGSS+YSK+FKPEIA RPKVRDQ
             SYIN+K KEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
Sbjct  181  SYINNKKKEVLVIWGIHHPPTSNDQQTLYQNADAYVFVGSSKYSKRFKPEIAARPKVRDQ 240
Sbjct  181  SYINNKEKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIASRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
             GRM+YYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  AGRMDYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 2,622: Line 3,161:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNS+IEKMNTQFTAVGKEFN LEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID +TNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSIIEKMNTQFTAVGKEFNQLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGVTNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IE+LN KVDDGFLDIWTYNAELLVLLENE+TLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLD+WTYNAELLVLLENER LDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IESLNNKVDDGFLDIWTYNAELLVLLENEKTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERALDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVL+VSLGAISFWMCSNGSLQCRICI
             L+L+VSLGAISFWMCSNGSLQCRICI
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  LILLVSLGAISFWMCSNGSLQCRICI 566




>gb|AAR90881.2|  hemagglutinin [Influenza A virus (A/swine/Pingtung/92-2/2003(H1N2))]
>gb|AAL87869.1|AF455679_1 hemagglutinin [Influenza A virus (A/Swine/Iowa/930/01(H1N2))]
Length=566
Length=566


  Score = 1104 bits (2856),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1108 bits (2867),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 515/566 (90%), Positives = 548/566 (96%), Gaps = 0/566 (0%)
  Identities = 524/566 (92%), Positives = 549/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILVVLLYTF ANADTLCIGYHANNSTDTVDT+LEKN+TVTHSVNLLEDKHNGKLCK
             MKAILVVLLYTF TA+ADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE+KHNGKLCK
Sbjct  1    MKAILVVLLYTFTAANADTLCIGYHANNSTDTVDTLLEKNITVTHSVNLLEDKHNGKLCK 60
Sbjct  1    MKAILVVLLYTFTTADADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENKHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRG+APLHLGKCNIAGW+LGNPECE L TA SWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVET +SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGMAPLHLGKCNIAGWLLGNPECEPLFTAKSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETPNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
            QLSSVSSFERFEIFPK SSWPNH++NKGVTAACPHAGA SFY+NLIWLVKKGNSYPKL+K
            LSSVSSFERFEIFPK +SWPNHD+NKGVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNKGVTAACPHAGANSFYRNLIWLVKKGNSYPKLNK 180
Sbjct  121  HLSSVSSFERFEIFPKANSWPNHDTNKGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+KGKEVLVLWGIHHPSTS DQQSLYQNADAYVFVGSS+Y+KK KPEIA RPKVRDQ
             SYIN+K KEVLV+WGIHHP TS DQQ+LYQNADAYVFVGSS+YSK+FKPEIA RPKVRDQ
Sbjct  181  SYVNNKGKEVLVLWGIHHPSTSNDQQSLYQNADAYVFVGSSKYNKKLKPEIATRPKVRDQ 240
Sbjct  181  SYINNKKKEVLVIWGIHHPPTSTDQQTLYQNADAYVFVGSSKYSKRFKPEIAERPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GR+NYYWTLVEPGD ITFEATGNL+VPRYAFAM R++GSGIIISD PVHDCN TCQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  AGRINYYWTLVEPGDTITFEATGNLIVPRYAFAMNRDSGSGIIISDAPVHDCNATCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTS PFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSHPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSG+AAD KSTQNAID ITNK+NSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVN VIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGFAADRKSTQNAIDGITNKINSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNPVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             +ENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
             IE+LN KVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  VENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480
Sbjct  421  IESLNNKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCDNTCMESVKNGTYDYP+YSEE+KLNREEI+GVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDNTCMESVKNGTYDYPRYSEESKLNREEIEGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 2,685: Line 3,224:




>gb|ACA25337.1|  hemagglutinin [Influenza A virus (A/swine/Shanghai/1/2005(H1N1))]
>gb|AAF87277.1|AF222029_1 hemagglutinin [Influenza A virus (A/Swine/Wisconsin/164/97(H1N1))]
Length=566
Length=566


  Score = 1104 bits (2856),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1108 bits (2867),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 521/566 (92%), Positives = 548/566 (96%), Gaps = 0/566 (0%)
  Identities = 521/566 (92%), Positives = 550/566 (97%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILVVLLYTFA A ADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAIL+VLLYTF  ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILVVLLYTFAAAKADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRG+APLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGIAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFE+FPK+SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKK NSYPKLSK
             QLSSVSSFERFEIFPK SSWP+H++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEMFPKSSSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKENSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPDHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K KEVLVLWGIHHP TSADQQSLYQNADAYVFVGSS+Y+KKF+PEIA RPKVR Q
             SYIN+K KEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
Sbjct  181  SYINNKEKEVLVLWGIHHPPTSADQQSLYQNADAYVFVGSSKYNKKFRPEIAARPKVRGQ 240
Sbjct  181  SYINNKEKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIASRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
             GRM+YYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  TGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  AGRMDYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKST LR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTNLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID +TNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGVTNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDG LD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGLLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESV+NGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVRNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVL+VSLGA+SFWMCSNGSLQCRI I
             L+L+VSLGAISFWMCSNGSLQCRICI
Sbjct  541  LVLLVSLGAVSFWMCSNGSLQCRIYI 566
Sbjct  541  LILLVSLGAISFWMCSNGSLQCRICI 566




>gb|AAF87275.1|AF222027_1 hemagglutinin [Influenza A virus (A/Swine/Wisconsin/136/97(H1N1))]
>gb|AAN46827.1|  hemagglutinin [Influenza A virus (A/Swine/Korea/CY02/02(H1N2))]
Length=566
Length=566


  Score = 1104 bits (2855),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1108 bits (2866),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 517/566 (91%), Positives = 548/566 (96%), Gaps = 0/566 (0%)
  Identities = 522/566 (92%), Positives = 548/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE++HNGKLCK
             MKAILVVLLYTF TA+ADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE+KHNGKLCK
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENRHNGKLCK 60
Sbjct  1    MKAILVVLLYTFTTADADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENKHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             L+GVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LKGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
            QLSSVSSFERFEIFPK +SWPNH++N+GVT+ACP+AGA SFY+NLIWLVKKGNSYPKLSK
            LSSVSSFERFEIFPK +SWPNHD+NKGVTAACPHAGA SFY+NLIWLVKK NSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKANSWPNHETNRGVTSACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  HLSSVSSFERFEIFPKVNSWPNHDTNKGVTAACPHAGANSFYRNLIWLVKKENSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKF PEIA RPKVR Q
             SYIN+K KEVLV+WGIHHP TS DQQ+LYQNADAYVFVGSS+YS++FKPEIA RPKVRDQ
Sbjct  181  SYINNKGKEVLVLWGIHHPPTSNDQQSLYQNADAYVFVGSSKYNKKFMPEIATRPKVRGQ 240
Sbjct  181  SYINNKKKEVLVIWGIHHPPTSTDQQALYQNADAYVFVGSSKYSRRFKPEIAARPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLV PRYAFAMER +GSGIIISDTPVHDCN TCQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVAPRYAFAMERGSGSGIIISDTPVHDCNATCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINT+LPFQNIHP+TIG+CPKYVKST+LR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQS+GLFGAIAGFIEGGWTG
Sbjct  301  GAINTNLPFQNIHPVTIGECPKYVKSTRLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSKGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSV+EKMNTQFTAVGKEFN LEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVVEKMNTQFTAVGKEFNQLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQL+NNAKEIGNG
             IE LN KVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLRNNAKEIGNG 480
Sbjct  421  IEGLNNKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMES+KNGTYDYPKYSEEAKL REEIDGVKLESTRIYQILAIYST+ASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESIKNGTYDYPKYSEEAKLTREEIDGVKLESTRIYQILAIYSTIASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 2,779: Line 3,318:




>gb|ABX58646.1|  hemagglutinin [Influenza A virus (A/swine/Iowa/2/1987(H1N1))]
>gb|ABB86946.1|  hemagglutinin [Influenza A virus (A/swine/Ontario/11112/04(H1N1))]
Length=566
Length=566


  Score = 1103 bits (2853),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1108 bits (2866),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 518/566 (91%), Positives = 547/566 (96%), Gaps = 0/566 (0%)
  Identities = 516/566 (91%), Positives = 549/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Line 2,790: Line 3,329:


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRG+APLHLGKCNIAGW+LGNPECESLST SSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGIAPLHLGKCNIAGWLLGNPECESLSTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFPK SSWPNH++N+G TAACP+AGA SFY+NLIWLVKKGNSYPKL+K
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGTTAACPYAGANSFYRNLIWLVKKGNSYPKLNK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
             SY+N+KGKEVLVLWGIHHPSTS +QQSLYQNAD YVFVGSS+Y+KKFKPEIA RPKVRDQ
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240
Sbjct  181  SYVNNKGKEVLVLWGIHHPSTSNEQQSLYQNADTYVFVGSSKYNKKFKPEIATRPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTPVHDCNTTCQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 2,810: Line 3,349:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQN QGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNGQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKL+STRIYQILAIYSTVASS
             CFEFYHKCD+ CMESVKNGTYDYPKYSEE++LNREEIDG+KL+STRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLDSTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDACMESVKNGTYDYPKYSEESRLNREEIDGIKLDSTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
            LVL+VSLGAISFWMCSNGSLQCRICI
            VL+VSLGAISFWMCSNGSLQCRICI
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  SVLLVSLGAISFWMCSNGSLQCRICI 566




>gb|AAF87283.1|AF222035_1 hemagglutinin [Influenza A virus (A/Swine/Wisconsin/458/98(H1N1))]
>gb|ABV25638.1|  hemagglutinin [Influenza A virus (A/swine/Minnesota/37866/1999(H1N1))]
Length=566
Length=566


  Score = 1103 bits (2853),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1108 bits (2865),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 518/566 (91%), Positives = 547/566 (96%), Gaps = 0/566 (0%)
  Identities = 522/566 (92%), Positives = 549/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILVVLLY F TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAILVVLLY F TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE+KHNGKLCK
Sbjct  1    MKAILVVLLYAFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILVVLLYAFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEEKHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             L+GVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGWILGNPECESL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LKGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWILGNPECESLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+GVT+ACP++GA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFPK SSWPN+++++GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTSACPYSGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNYETSRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKF PEIA RPKVR Q
             SYIN+K KEVLVLWGIHHPSTS DQQSLYQNADAYVFVGSS+YSKKFKPEIA RPKVRDQ
Sbjct  181  SYINNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFMPEIATRPKVRGQ 240
Sbjct  181  SYINNKEKEVLVLWGIHHPSTSTDQQSLYQNADAYVFVGSSKYSKKFKPEIATRPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLV PRYAFAMER +GSGIIISDTPV+DCNT CQTPK
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDT VHDCNT CQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVAPRYAFAMERGSGSGIIISDTPVYDCNTACQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTSVHDCNTNCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKS KLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSKKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYA D KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQ+AID ITNKVNS+IEKMN+QFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAPDRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQSAIDGITNKVNSIIEKMNSQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFL++WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLN+KVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLNVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNRKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEA+LNREEIDGVKLESTRIYQILAIYST+ASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLEST +YQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEARLNREEIDGVKLESTRIYQILAIYSTIASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTEVYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 2,873: Line 3,412:




>gb|ACE77928.1|  hemagglutinin [Influenza A virus (A/swine/Korea/CAS08/2005(H1N1))]
>gb|ABV25640.1|  hemagglutinin [Influenza A virus (A/swine/North Carolina/36883/2002(H1N1))]
Length=566
Length=566


  Score = 1103 bits (2852),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1106 bits (2861),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 518/566 (91%), Positives = 548/566 (96%), Gaps = 0/566 (0%)
  Identities = 522/566 (92%), Positives = 548/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILVVLLYTFATA+ADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE+KHNGKLCK
             MK ILVVLLYTF TA+ADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE+KHNGKLCK
Sbjct  1    MKAILVVLLYTFATADADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENKHNGKLCK 60
Sbjct  1    MKTILVVLLYTFTTADADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENKHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRG+APLHLGKCNIAGW+LGNPECESL TASSWSYIVET +SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGIAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETPNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Line 2,893: Line 3,432:
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K KEVLV+WGIHHP TS DQQ+LYQNADAYVFVGSS+YSK+FKPEIA RPKVRDQ
             SYIN+K KEVLV+WGIHHP TS DQQ+LYQNADAYVFVGSS+YSK+FKPEIA RPKVRDQ
Sbjct  181  SYINNKKKEVLVIWGIHHPPTSTDQQTLYQNADAYVFVGSSKYSKRFKPEIAARPKVRDQ 240
Sbjct  181  SYINNKKKEVLVIWGIHHPPTSTDQQTLYQNADAYVFVGSSKYSKEFKPEIAARPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAF M+R +GSGII+SD PVHDCNTTCQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM+R +GSGIIISD PVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFPMKRGSGSGIIVSDAPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDKPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 2,904: Line 3,443:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNS+IEKMNTQFTAVGKEF+ LEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFN LEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSIIEKMNTQFTAVGKEFSQLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNQLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Line 2,920: Line 3,459:




>gb|AAL29715.1|  hemagglutinin [Influenza A virus (A/SW/MN/17138/01(H1N2))]
>gb|AAL29712.1|  hemagglutinin [Influenza A virus (A/SW/MO/1877/01(H1N2))]
Length=566
Length=566


  Score = 1103 bits (2852),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1106 bits (2861),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 518/566 (91%), Positives = 547/566 (96%), Gaps = 0/566 (0%)
  Identities = 521/566 (92%), Positives = 549/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+V LYTF  ANADTLCIGYHANNST+TVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAILVVLLYTF TA+ADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE+KHNGKLCK
Sbjct  1    MKAILLVSLYTFTAANADTLCIGYHANNSTETVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILVVLLYTFTTADADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENKHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVET +SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETPNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
            QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYP LSK
            LSSVSSFERFEIFPK +SWPNHD+NKGVTAACP+AGA SFY+NLIWLVKKG+SYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPTLSK 180
Sbjct  121  HLSSVSSFERFEIFPKANSWPNHDTNKGVTAACPYAGASSFYRNLIWLVKKGDSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+KGKEVLVLWGIHHP T+ DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
             SYIN+K KEVLV+WGIHHP TS DQQ+LYQNADAYVFVGSS+YSK+FKPEIA RPKVRDQ
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTNTDQQSLYQNADAYVFVGSSKYNKKFKPEIAPRPKVRGQ 240
Sbjct  181  SYINNKKKEVLVIWGIHHPPTSNDQQTLYQNADAYVFVGSSKYSKRFKPEIAARPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTP+HDCNTTCQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPIHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 2,951: Line 3,490:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID IT KVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNS+IEKMNTQFTAVGKEFN LEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITTKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSIIEKMNTQFTAVGKEFNQLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQL+NNAKEIGNG
             IE+LN KVDDGFLDIWTYNAELLVLLENE+TLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLRNNAKEIGNG 480
Sbjct  421  IESLNNKVDDGFLDIWTYNAELLVLLENEKTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMES+KNG YDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESIKNGIYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 2,967: Line 3,506:




>gb|AAL29709.1|  hemagglutinin [Influenza A virus (A/SW/CO/17871/01(H1N2))]
>gb|AAR90881.2|  hemagglutinin [Influenza A virus (A/swine/Pingtung/92-2/2003(H1N2))]
Length=566
Length=566


  Score = 1103 bits (2852),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1104 bits (2856),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 519/566 (91%), Positives = 547/566 (96%), Gaps = 0/566 (0%)
  Identities = 515/566 (90%), Positives = 548/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLLYTF  ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE+KHNGKLCK
             MKAILVVLLYTF  ANADTLCIGYHANNSTDTVDT+LEKN+TVTHSVNLLEDKHNGKLCK
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENKHNGKLCK 60
Sbjct  1    MKAILVVLLYTFTAANADTLCIGYHANNSTDTVDTLLEKNITVTHSVNLLEDKHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVET +SDNGTCYPGDFI+YEELRE
             LRG+APLHLGKCNIAGW+LGNPECE L TA SWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETPNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGMAPLHLGKCNIAGWLLGNPECEPLFTAKSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
            LSSVSSFERFEIFPK +SWPNH++NKGVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
            QLSSVSSFERFEIFPK SSWPNH++NKGVTAACPHAGA SFY+NLIWLVKKGNSYPKL+K
Sbjct  121  HLSSVSSFERFEIFPKANSWPNHETNKGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNKGVTAACPHAGANSFYRNLIWLVKKGNSYPKLNK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K KEVLV+WGIHHP TS DQQ+LYQNADAYVFVGSS+YSK+FKPEIA RPKVRDQ
             SY+N+KGKEVLVLWGIHHPSTS DQQSLYQNADAYVFVGSS+Y+KK KPEIA RPKVRDQ
Sbjct  181  SYINNKKKEVLVIWGIHHPPTSTDQQTLYQNADAYVFVGSSKYSKRFKPEIAARPKVRDQ 240
Sbjct  181  SYVNNKGKEVLVLWGIHHPSTSNDQQSLYQNADAYVFVGSSKYNKKLKPEIATRPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLV PRYAFAM+R +GSGI+ISDTPVHDCNTTCQTPK
             GR+NYYWTLVEPGD ITFEATGNL+VPRYAFAM R++GSGIIISD PVHDCN TCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVAPRYAFAMKRGSGSGIVISDTPVHDCNTTCQTPK 300
Sbjct  241  AGRINYYWTLVEPGDTITFEATGNLIVPRYAFAMNRDSGSGIIISDAPVHDCNATCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTS PFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSHPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQ+AID ITNKVNSVIEKMNTQFTAVGKEFN LEKR
             M+DGWYGYHHQNEQGSG+AAD KSTQNAID ITNK+NSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQSAIDGITNKVNSVIEKMNTQFTAVGKEFNQLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGFAADRKSTQNAIDGITNKINSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IE+LN KVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             +ENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
Sbjct  421  IESLNNKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  VENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCDNTCMESVKNGTYDYP+YSEE+KLNREEI+GVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDNTCMESVKNGTYDYPRYSEESKLNREEIEGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 3,014: Line 3,553:




>gb|ABV25643.1|  hemagglutinin [Influenza A virus (A/swine/Iowa/00239/2004(H1N1))]
>gb|ACA25337.1|  hemagglutinin [Influenza A virus (A/swine/Shanghai/1/2005(H1N1))]
Length=566
Length=566


  Score = 1102 bits (2851),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1104 bits (2856),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 516/566 (91%), Positives = 548/566 (96%), Gaps = 0/566 (0%)
  Identities = 521/566 (92%), Positives = 548/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAI+VVLLYTFATA+ADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE+KH+GKLCK
             MKAILVVLLYTFA A ADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAIIVVLLYTFATADADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENKHDGKLCK 60
Sbjct  1    MKAILVVLLYTFAAAKADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRG+APLHLGKCNIAGW+LGNPECESL TASSWSYIVET +SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGIAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETPNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
            LSSVSSFERFEIFPK +SWPNHD+NKGVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
            QLSSVSSFERFE+FPK+SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKK NSYPKLSK
Sbjct  121  HLSSVSSFERFEIFPKANSWPNHDTNKGVTAACPYAGASSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEMFPKSSSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKENSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K KEVLV+WGIHHP TS DQQ+LYQNADAYVFVGSS+YSK+FKPEIA RPKVRDQ
             SYIN+K KEVLVLWGIHHP TSADQQSLYQNADAYVFVGSS+Y+KKF+PEIA RPKVR Q
Sbjct  181  SYINNKKKEVLVIWGIHHPPTSTDQQTLYQNADAYVFVGSSKYSKRFKPEIAARPKVRDQ 240
Sbjct  181  SYINNKEKEVLVLWGIHHPPTSADQQSLYQNADAYVFVGSSKYNKKFRPEIAARPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRM+YYWTL+EPGD ITFEATGNLVVPRYAFAM+R +GSGII+SD PVHDCNTTCQTPK
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  AGRMDYYWTLIEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIVSDAPVHDCNTTCQTPK 300
Sbjct  241  TGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKST LR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTNLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNS+IEKMNTQFTAVGKEF+ LEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSIIEKMNTQFTAVGKEFSQLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IE+LN KVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDG LD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IESLNNKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGLLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLES RIYQILAIYSTVASS
             CFEFYHKCD+TCMESV+NGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESARIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVRNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVL+VSLGA+SFWMCSNGSLQCRICI
             LVL+VSLGA+SFWMCSNGSLQCRI I
Sbjct  541  LVLLVSLGAVSFWMCSNGSLQCRICI 566
Sbjct  541  LVLLVSLGAVSFWMCSNGSLQCRIYI 566




>gb|ABD85123.1|  hemagglutinin [Influenza A virus (A/swine/Taiwan/CO935/2004(H1N2))]
>gb|AAF87275.1|AF222027_1 hemagglutinin [Influenza A virus (A/Swine/Wisconsin/136/97(H1N1))]
gb|ABD85261.1|  hemagglutinin [Influenza A virus (A/swine/Taiwan/CO935/2004(H1N2))]
Length=566
Length=566


  Score = 1102 bits (2851),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1104 bits (2855),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 516/566 (91%), Positives = 548/566 (96%), Gaps = 0/566 (0%)
  Identities = 517/566 (91%), Positives = 548/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLLYTF  ANADTLCIGYHANNSTDTVDT+LEKNVTVTHSVNLLEDKHNGKLCK
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE++HNGKLCK
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTLLEKNVTVTHSVNLLEDKHNGKLCK 60
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRG+APLHLGKCNIAGW+LGNPECE L TA SWSYIVETS+SDNGTCYPGDFI+YEELRE
             L+GVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGIAPLHLGKCNIAGWLLGNPECEPLFTAKSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LKGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++NKGVTAACP+AGA SFY+NLIWLVKKGNSYPKL+K
             QLSSVSSFERFEIFPK +SWPNH++N+GVT+ACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNKGVTAACPYAGANSFYRNLIWLVKKGNSYPKLNK 180
Sbjct  121  QLSSVSSFERFEIFPKANSWPNHETNRGVTSACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+KGKEVLVLWGIHHPSTS DQQSLYQNADAYVFVGSS+Y+K+FKPEIA RPKVRDQ
             SYIN+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKF PEIA RPKVR Q
Sbjct  181  SYVNNKGKEVLVLWGIHHPSTSNDQQSLYQNADAYVFVGSSKYNKRFKPEIATRPKVRDQ 240
Sbjct  181  SYINNKGKEVLVLWGIHHPPTSNDQQSLYQNADAYVFVGSSKYNKKFMPEIATRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTLVEPGD ITFEATGNL+VPRYAFAM R +GSGIIISDTPVHDCNTTCQTPK
             GRMNYYWTL+EPGD ITFEATGNLV PRYAFAMER +GSGIIISDTPVHDCN TCQTPK
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLIVPRYAFAMNRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVAPRYAFAMERGSGSGIIISDTPVHDCNATCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTS PFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINT+LPFQNIHP+TIG+CPKYVKST+LR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSHPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTNLPFQNIHPVTIGECPKYVKSTRLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSG+AAD KSTQNAID ITNK+NSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGFAADRKSTQNAIDGITNKINSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             +ENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQL+NNAKEIGNG
Sbjct  421  VENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLRNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCDNTCMESVKNGTYDYP+YSEE+KLNREEI+GVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMES+KNGTYDYPKYSEEAKL REEIDGVKLESTRIYQILAIYST+ASS
Sbjct  481  CFEFYHKCDNTCMESVKNGTYDYPRYSEESKLNREEIEGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESIKNGTYDYPKYSEEAKLTREEIDGVKLESTRIYQILAIYSTIASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVLVVSLGAISFWMCSNGSL  RICI
             LVL+VSLGAISFWMCSNGSLQCRICI
Sbjct  541  LVLVVSLGAISFWMCSNGSLHGRICI 566
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI 566




>gb|AAO65612.1|  hemagglutinin [Influenza A virus (A/duck/NC/91347/01(H1N2))]
>gb|ABX58646.1|  hemagglutinin [Influenza A virus (A/swine/Iowa/2/1987(H1N1))]
Length=566
Length=566


  Score = 1102 bits (2850),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1103 bits (2853),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 521/566 (92%), Positives = 546/566 (96%), Gaps = 0/566 (0%)
  Identities = 518/566 (91%), Positives = 547/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MK ILVVLLYTF TA+ADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE+KHNGKLCK
             MKAIL+VLLYTF  ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKTILVVLLYTFTTADADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENKHNGKLCK 60
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVET +SDNGTCYPGDFI+YEELRE
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETPNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
            LSSV SFERFEIFPK +SWPNHD++KGVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
            QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  HLSSVLSFERFEIFPKANSWPNHDTDKGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K KEVLV+WGIHHP TS DQQ+LYQNADAYVFVGSS+YSKKFKPEIA RPKVRDQ
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
Sbjct  181  SYINNKKKEVLVIWGIHHPPTSTDQQTLYQNADAYVFVGSSKYSKKFKPEIAARPKVRDQ 240
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIATRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM+R +GSGIIISD PVHDCNTTCQTPK
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDKPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQN+HP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNVHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFN LEKR
             M+DGWYGYHHQN QGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNQLEKR 420
Sbjct  361  MIDGWYGYHHQNGQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IE+LN KVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
Sbjct  421  IESLNNKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKL+STRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLDSTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 3,156: Line 3,694:




>gb|AAF87274.1|AF222026_1 hemagglutinin [Influenza A virus (A/Swine/Wisconsin/125/97(H1N1))]
>gb|AAF87283.1|AF222035_1 hemagglutinin [Influenza A virus (A/Swine/Wisconsin/458/98(H1N1))]
Length=566
Length=566


  Score = 1102 bits (2850),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1103 bits (2853),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 516/566 (91%), Positives = 548/566 (96%), Gaps = 0/566 (0%)
  Identities = 518/566 (91%), Positives = 547/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE++HNGKLCK
             MKAILVVLLY F TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENRHNGKLCK 60
Sbjct  1    MKAILVVLLYAFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Line 3,171: Line 3,709:


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK +SWPNH++N+GVT+ACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFPK SSWPNH++N+GVT+ACP++GA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKANSWPNHETNRGVTSACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTSACPYSGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKF PEIA RPKVR Q
             SYIN+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKF PEIA RPKVR Q
Sbjct  181  SYINNKGKEVLVLWGIHHPPTSNDQQSLYQNADAYVFVGSSKYNKKFMPEIATRPKVRGQ 240
Sbjct  181  SYINNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFMPEIATRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLV PRYAFAMER +GSGIIISDTPVHDCN TCQTPK
             GRMNYYWTL+EPGD ITFEATGNLV PRYAFAMER +GSGIIISDTPV+DCNT CQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVAPRYAFAMERGSGSGIIISDTPVHDCNATCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVAPRYAFAMERGSGSGIIISDTPVYDCNTACQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINT+LPFQNIHP+TIG+CPKYVKST+LR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTNLPFQNIHPVTIGECPKYVKSTRLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYA D KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAPDRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             I+NLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQL+NNAKEIGNG
             IENLNKKVDDGFL++WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IKNLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLRNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLNVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMES+KNGTYDYPKYSEEAKL REEIDGVKLESTRIYQILAIYST+ASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEA+LNREEIDGVKLESTRIYQILAIYST+ASS
Sbjct  481  CFEFYHKCDDTCMESIKNGTYDYPKYSEEAKLTREEIDGVKLESTRIYQILAIYSTIASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEARLNREEIDGVKLESTRIYQILAIYSTIASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 3,203: Line 3,741:




>gb|ACI26329.1|  hemagglutinin [Influenza A virus (A/X-53A(Puerto Rico/8/1934-New
>gb|ACE77928.1|  hemagglutinin [Influenza A virus (A/swine/Korea/CAS08/2005(H1N1))]
Jersey/11/1976)(H1N1))]
Length=566
Length=566


  Score = 1100 bits (2846),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1103 bits (2852),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 517/566 (91%), Positives = 546/566 (96%), Gaps = 0/566 (0%)
  Identities = 518/566 (91%), Positives = 548/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLL TFA  NADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAILVVLLYTFATA+ADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE+KHNGKLCK
Sbjct  1    MKAILLVLLCTFAATNADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILVVLLYTFATADADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENKHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRG+APLHLGKCNIAGW+LGNPECESL TASSWSYIVET +SDNGTCYPGDFI+YEELRE
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLLTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGIAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETPNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
            QLSSVSSFERFEIFPKTSSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
            LSSVSSFERFEIFPK +SWPNHD++KGVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  HLSSVSSFERFEIFPKANSWPNHDTDKGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
             SYIN+K KEVLV+WGIHHP TS DQQ+LYQNADAYVFVGSS+YSK+FKPEIA RPKVRDQ
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ 240
Sbjct  181  SYINNKKKEVLVIWGIHHPPTSTDQQTLYQNADAYVFVGSSKYSKRFKPEIAARPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISD PVHDCNT CQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAF M+R +GSGII+SD PVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDAPVHDCNTKCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFPMKRGSGSGIIVSDAPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 3,235: Line 3,772:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD +STQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNS+IEKMNTQFTAVGKEF+ LEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQRSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSIIEKMNTQFTAVGKEFSQLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
             IE+LN KVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480
Sbjct  421  IESLNNKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 3,251: Line 3,788:




>gb|ABR28636.1|  hemagglutinin [Influenza A virus (A/swine/Minnesota/5892-7/1979(H1N1))]
>gb|AAL29715.1|  hemagglutinin [Influenza A virus (A/SW/MN/17138/01(H1N2))]
Length=566
Length=566


  Score = 1100 bits (2846),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1103 bits (2852),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 515/566 (90%), Positives = 545/566 (96%), Gaps = 0/566 (0%)
  Identities = 518/566 (91%), Positives = 547/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLLYTF ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAIL+V LYTF ANADTLCIGYHANNST+TVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILLVSLYTFTAANADTLCIGYHANNSTETVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACPHAGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYP LSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPHAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPTLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+KGKEVLVLWGIHHP TS DQ+SLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
             SY+N+KGKEVLVLWGIHHP T+ DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQESLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ 240
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTNTDQQSLYQNADAYVFVGSSKYNKKFKPEIAPRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISD PVHDCNTTCQTPK
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTP+HDCNTTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDVPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPIHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 3,282: Line 3,819:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQN QGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAADLKSTQNAID IT KVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNGQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADLKSTQNAIDGITTKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQL+NNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLRNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLEST+IYQILAIYST ASS
             CFEFYHKCD+TCMES+KNG YDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTKIYQILAIYSTAASS 540
Sbjct  481  CFEFYHKCDDTCMESIKNGIYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 3,298: Line 3,835:




>gb|ABR28713.1|  hemagglutinin [Influenza A virus (A/swine/Wisconsin/11/1980(H1N1))]
>gb|AAL29709.1|  hemagglutinin [Influenza A virus (A/SW/CO/17871/01(H1N2))]
Length=566
Length=566


  Score = 1100 bits (2845),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1103 bits (2852),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 514/566 (90%), Positives = 546/566 (96%), Gaps = 0/566 (0%)
  Identities = 519/566 (91%), Positives = 547/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLLYTF  ANADTLC+GYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAIL+VLLYTF  ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE+KHNGKLCK
Sbjct  1    MKAILLVLLYTFTAANADTLCVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENKHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVET +SDNGTCYPGDFI+YEELRE
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETPNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
            QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
            LSSVSSFERFEIFPK +SWPNH++NKGVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  HLSSVSSFERFEIFPKANSWPNHETNKGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
             SYIN+K KEVLV+WGIHHP TS DQQ+LYQNADAYVFVGSS+YSK+FKPEIA RPKVRDQ
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ 240
Sbjct  181  SYINNKKKEVLVIWGIHHPPTSTDQQTLYQNADAYVFVGSSKYSKRFKPEIAARPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTP+HDCNTTCQTPK
             GRMNYYWTL+EPGD ITFEATGNLV PRYAFAM+R +GSGI+ISDTPVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDTPIHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVAPRYAFAMKRGSGSGIVISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 3,329: Line 3,866:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQN QGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQ+AID ITNKVNSVIEKMNTQFTAVGKEFN LEKR
Sbjct  361  MIDGWYGYHHQNGQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQSAIDGITNKVNSVIEKMNTQFTAVGKEFNQLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
             IE+LN KVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480
Sbjct  421  IESLNNKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYH+CD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYST ASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHRCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTAASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 3,345: Line 3,882:




>gb|ABQ42448.1|  hemagglutinin [Influenza A virus (A/swine/Hainan/1/2005(H1N2))]
>gb|ABV25643.1|  hemagglutinin [Influenza A virus (A/swine/Iowa/00239/2004(H1N1))]
Length=566
Length=566


  Score = 1100 bits (2844),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1102 bits (2851),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 517/566 (91%), Positives = 548/566 (96%), Gaps = 0/566 (0%)
  Identities = 516/566 (91%), Positives = 548/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILVVLLY F  NADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAI+VVLLYTFATA+ADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE+KH+GKLCK
Sbjct  1    MKAILVVLLYAFTRGNADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAIIVVLLYTFATADADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENKHDGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRG+APLHLGKCNIAGW+LGNPECESL TASSWSYIVET +SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGIAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETPNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
            QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
            LSSVSSFERFEIFPK +SWPNHD+NKGVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  HLSSVSSFERFEIFPKANSWPNHDTNKGVTAACPYAGASSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+KGKEVLVLWGIHHPST+ DQQSLYQNAD YVFV +S+YSKKFKPEIA RPKVRDQ
             SYIN+K KEVLV+WGIHHP TS DQQ+LYQNADAYVFVGSS+YSK+FKPEIA RPKVRDQ
Sbjct  181  SYINNKGKEVLVLWGIHHPSTNTDQQSLYQNADTYVFVVTSKYSKKFKPEIAARPKVRDQ 240
Sbjct  181  SYINNKKKEVLVIWGIHHPPTSTDQQTLYQNADAYVFVGSSKYSKRFKPEIAARPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRM+YYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVH+C+TTCQTPK
             GRM+YYWTL+EPGD ITFEATGNLVVPRYAFAM+R +GSGII+SD PVHDCNTTCQTPK
Sbjct  241  AGRMDYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHNCSTTCQTPK 300
Sbjct  241  AGRMDYYWTLIEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIVSDAPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 3,376: Line 3,913:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNS+IEKMNTQFTAVGKEF+ LEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSIIEKMNTQFTAVGKEFSQLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDG LD+WTYNAELLVLLENERTLDYHDSNV+NLYEKVR+QLKNNAKEIGNG
             IE+LN KVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGLLDVWTYNAELLVLLENERTLDYHDSNVRNLYEKVRNQLKNNAKEIGNG 480
Sbjct  421  IESLNNKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CF+FYHKCD+TCMESVKNGTYDYPKY+EEAKLNR+EIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLES RIYQILAIYSTVASS
Sbjct  481  CFKFYHKCDDTCMESVKNGTYDYPKYTEEAKLNRKEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESARIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVL+VSLGAISFWMCSNGSLQCRICI
             LVL+VSLGA+SFWMCSNGSLQCRICI
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  LVLLVSLGAVSFWMCSNGSLQCRICI 566




>gb|AAL29714.1|  hemagglutinin [Influenza A virus (A/SW/MN/34893/01(H1N2))]
>gb|ABD85123.1|  hemagglutinin [Influenza A virus (A/swine/Taiwan/CO935/2004(H1N2))]
gb|ABD85261.1|  hemagglutinin [Influenza A virus (A/swine/Taiwan/CO935/2004(H1N2))]
Length=566
Length=566


  Score = 1100 bits (2844),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1102 bits (2851),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 519/566 (91%), Positives = 544/566 (96%), Gaps = 0/566 (0%)
  Identities = 516/566 (91%), Positives = 548/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             M+AILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAIL+VLLYTF  ANADTLCIGYHANNSTDTVDT+LEKNVTVTHSVNLLEDKHNGKLCK
Sbjct  1    MEAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTLLEKNVTVTHSVNLLEDKHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRG+ PLHLGKCNIAGW+LGNPEC SL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRG+APLHLGKCNIAGW+LGNPECE L TA SWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGIDPLHLGKCNIAGWLLGNPECGSLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGIAPLHLGKCNIAGWLLGNPECEPLFTAKSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++NKGVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFPK SSWPNH++NKGVTAACP+AGA SFY+NLIWLVKKGNSYPKL+K
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNKGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNKGVTAACPYAGANSFYRNLIWLVKKGNSYPKLNK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY N+ KEVLVLWGIHHPSTS DQQSLYQN DAYVFVGSS YSKKFKPEIA RPKVRDQ
             SY+N+KGKEVLVLWGIHHPSTS DQQSLYQNADAYVFVGSS+Y+K+FKPEIA RPKVRDQ
Sbjct  181  SYTNNMEKEVLVLWGIHHPSTSTDQQSLYQNTDAYVFVGSSTYSKKFKPEIAARPKVRDQ 240
Sbjct  181  SYVNNKGKEVLVLWGIHHPSTSNDQQSLYQNADAYVFVGSSKYNKRFKPEIATRPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISD  +HDCNTTCQTPK
             GRMNYYWTLVEPGD ITFEATGNL+VPRYAFAM R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDASIHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLIVPRYAFAMNRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIGKCPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTS PFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGKCPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSHPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             MVDGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVN VIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSG+AAD KSTQNAID ITNK+NSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MVDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNPVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGFAADRKSTQNAIDGITNKINSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             +ENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  VENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEF HKCD+TCMESV+NGTYDYPKYSEEAKL+RE+IDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCDNTCMESVKNGTYDYP+YSEE+KLNREEI+GVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFCHKCDDTCMESVRNGTYDYPKYSEEAKLSREKIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDNTCMESVKNGTYDYPRYSEESKLNREEIEGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             ++L+VSLGAISFWMCSNGSLQCRICI
             LVLVVSLGAISFWMCSNGSL  RICI
Sbjct  541  MILLVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  LVLVVSLGAISFWMCSNGSLHGRICI 566




>gb|ABR28658.1|  hemagglutinin [Influenza A virus (A/swine/Ontario/4/1981(H1N1))]
>gb|AAO65612.1|  hemagglutinin [Influenza A virus (A/duck/NC/91347/01(H1N2))]
gb|ABW36355.1|  hemagglutinin [Influenza A virus (A/swine/Ontario/6/1981(H1N1))]
Length=566
Length=566


  Score = 1099 bits (2843),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1102 bits (2850),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 513/566 (90%), Positives = 546/566 (96%), Gaps = 0/566 (0%)
  Identities = 521/566 (92%), Positives = 546/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLLYTF  ANADTLC+GYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MK ILVVLLYTF TA+ADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE+KHNGKLCK
Sbjct  1    MKAILLVLLYTFTAANADTLCVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKTILVVLLYTFTTADADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENKHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSY+VETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL TASSWSYIVET +SDNGTCYPGDFI+YEELRE
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYVVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFTASSWSYIVETPNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
            QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
            LSSV SFERFEIFPK +SWPNHD++KGVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  HLSSVLSFERFEIFPKANSWPNHDTDKGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
             SYIN+K KEVLV+WGIHHP TS DQQ+LYQNADAYVFVGSS+YSKKFKPEIA RPKVRDQ
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ 240
Sbjct  181  SYINNKKKEVLVIWGIHHPPTSTDQQTLYQNADAYVFVGSSKYSKKFKPEIAARPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTP+HDC+TTCQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM+R +GSGIIISD PVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMSRGSGSGIIISDTPIHDCDTTCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDKPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 3,471: Line 4,008:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQN QGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFN LEKR
Sbjct  361  MIDGWYGYHHQNGQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNQLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
             IE+LN KVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480
Sbjct  421  IESLNNKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYST ASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTAASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 3,487: Line 4,024:




>gb|AAL87868.1|AF455678_1 hemagglutinin [Influenza A virus (A/Swine/Minnesota/55551/00
>gb|AAF87274.1|AF222026_1 hemagglutinin [Influenza A virus (A/Swine/Wisconsin/125/97(H1N1))]
(H1N2))]
Length=566
Length=566


  Score = 1099 bits (2843),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1102 bits (2850),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 518/566 (91%), Positives = 545/566 (96%), Gaps = 0/566 (0%)
  Identities = 516/566 (91%), Positives = 548/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MK ILVVLLYTF TA+ADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE+KHNGKLCK
             MKAILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE++HNGKLCK
Sbjct  1    MKTILVVLLYTFTTADADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENKHNGKLCK 60
Sbjct  1    MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECESL  ASSWSYIVET +SDNGTCYPGDFI+YEELRE
             L+GVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFEASSWSYIVETPNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LKGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
            LSSVSSFERFEIFPK +SWPNHD++ GVTA+CP+AGAKSFY+NLIWLVKKG+SYPKLSK
            QLSSVSSFERFEIFPK +SWPNH++N+GVT+ACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  HLSSVSSFERFEIFPKANSWPNHDTDSGVTASCPYAGAKSFYRNLIWLVKKGSSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKANSWPNHETNRGVTSACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYINDK KEVLV+WGIHHP  S DQQ+LYQNADAYVFVGSS+YSK+FKPEIA RPKVRDQ
             SYIN+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKF PEIA RPKVR Q
Sbjct  181  SYINDKKKEVLVIWGIHHPPNSTDQQTLYQNADAYVFVGSSKYSKRFKPEIAARPKVRDQ 240
Sbjct  181  SYINNKGKEVLVLWGIHHPPTSNDQQSLYQNADAYVFVGSSKYNKKFMPEIATRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTPVHDCNTTCQTPK
             GRMNYYWTL+EPGD ITFEATGNLV PRYAFAMER +GSGIIISDTPVHDCN TCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMTRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVAPRYAFAMERGSGSGIIISDTPVHDCNATCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKL++ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINT+LPFQNIHP+TIG+CPKYVKST+LR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLKMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTNLPFQNIHPVTIGECPKYVKSTRLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFN LEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNQLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IE+LN KVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             I+NLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQL+NNAKEIGNG
Sbjct  421  IESLNNKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IKNLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLRNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMES+KNGTYDYPKYSEEAKL REEIDGVKLESTRIYQILAIYST+ASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESIKNGTYDYPKYSEEAKLTREEIDGVKLESTRIYQILAIYSTIASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 3,535: Line 4,071:




>gb|ABY81426.1|  hemagglutinin [Influenza A virus (A/swine/Iowa/1/1986(H1N1))]
>gb|ACI26329.1|  hemagglutinin [Influenza A virus (A/X-53A(Puerto Rico/8/1934-New
Jersey/11/1976)(H1N1))]
Length=566
Length=566


  Score = 1099 bits (2842),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1100 bits (2846),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 517/566 (91%), Positives = 546/566 (96%), Gaps = 0/566 (0%)
  Identities = 517/566 (91%), Positives = 546/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLLYTF ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAIL+VLL TFA NADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILLVLLCTFAATNADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             L G+APLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLLTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+GVT ACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFPKTSSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTVACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNAD+YVFVGSS+Y+KKFKPEIA RPKVR Q
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADSYVFVGSSKYNKKFKPEIATRPKVRGQ 240
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTPVHDCNTTCQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISD PVHDCNT CQTPK
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDAPVHDCNTKCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAIN+SLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINSSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQN QGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD +STQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNGQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQRSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDY KYSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYLKYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 3,582: Line 4,119:




>gb|ABS49932.1|  hemagglutinin [Influenza A virus (A/swine/Ontario/1/1981(H1N1))]
>gb|ABR28636.1|  hemagglutinin [Influenza A virus (A/swine/Minnesota/5892-7/1979(H1N1))]
Length=566
Length=566


  Score = 1099 bits (2842),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1100 bits (2846),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 513/566 (90%), Positives = 546/566 (96%), Gaps = 0/566 (0%)
  Identities = 515/566 (90%), Positives = 545/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLLYTF  ANADTLC+GYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAIL+VLLYTF  ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILLVLLYTFTAANADTLCVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSY+VETS+SDNGTCYPGDFI+YEELRE
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYVVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACPHAGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPHAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
             SY+N+KGKEVLVLWGIHHP TS DQ+SLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ 240
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQESLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTP+HDC+TTCQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISD PVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDTPIHDCDTTCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDVPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 3,621: Line 4,158:


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYST ASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLEST+IYQILAIYST ASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTAASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTKIYQILAIYSTAASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 3,629: Line 4,166:




>gb|ABR28614.1|  hemagglutinin [Influenza A virus (A/swine/Kentucky/1/1976(H1N1))]
>gb|ABR28713.1|  hemagglutinin [Influenza A virus (A/swine/Wisconsin/11/1980(H1N1))]
gb|ABV45838.1|  hemagglutinin [Influenza A virus (A/Wisconsin/301/1976(H1N1))]
gb|ABX58668.1|  hemagglutinin [Influenza A virus (A/swine/Wisconsin/30747/1976(H1N1))]
gb|ACK99410.1|  hemagglutinin [Influenza A virus (A/swine/Wisconsin/30954/1976(H1N1))]
Length=566
Length=566


  Score = 1099 bits (2842),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1100 bits (2845),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 516/566 (91%), Positives = 545/566 (96%), Gaps = 0/566 (0%)
  Identities = 514/566 (90%), Positives = 546/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLL TFA NADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAIL+VLLYTF ANADTLC+GYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILLVLLCTFAATNADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILLVLLYTFTAANADTLCVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Line 3,647: Line 4,181:


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPKTSSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Line 3,655: Line 4,189:


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R GSGIIISD PVHDCNTTCQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTP+HDCNTTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGPGSGIIISDAPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDTPIHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 3,663: Line 4,197:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVI+KMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQN QGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIKKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNGQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Line 3,671: Line 4,205:


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYST ASS
             CFEFYH+CD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYST ASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTAASS 540
Sbjct  481  CFEFYHRCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTAASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 3,679: Line 4,213:




>gb|ABR28537.1|  hemagglutinin [Influenza A virus (A/swine/Tennessee/10/1977(H1N1))]
>gb|ABQ42448.1|  hemagglutinin [Influenza A virus (A/swine/Hainan/1/2005(H1N2))]
Length=566
Length=566


  Score = 1098 bits (2839),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1100 bits (2844),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 515/566 (90%), Positives = 545/566 (96%), Gaps = 0/566 (0%)
  Identities = 517/566 (91%), Positives = 548/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLL TFA  NADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAILVVLLY F  NADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILLVLLCTFAVTNADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILVVLLYAFTRGNADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSY+VETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYVVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPKTSSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
             SYIN+KGKEVLVLWGIHHPST+ DQQSLYQNAD YVFV +S+YSKKFKPEIA RPKVRDQ
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ 240
Sbjct  181  SYINNKGKEVLVLWGIHHPSTNTDQQSLYQNADTYVFVVTSKYSKKFKPEIAARPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R GSGIIISD PVHDCNTTCQTPK
             GRM+YYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVH+C+TTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGPGSGIIISDAPVHDCNTTCQTPK 300
Sbjct  241  AGRMDYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHNCSTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 3,710: Line 4,244:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVI+KMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIKKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
             IENLNKKVDDG LD+WTYNAELLVLLENERTLDYHDSNV+NLYEKVR+QLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGLLDVWTYNAELLVLLENERTLDYHDSNVRNLYEKVRNQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYST ASS
             CF+FYHKCD+TCMESVKNGTYDYPKY+EEAKLNR+EIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTAASS 540
Sbjct  481  CFKFYHKCDDTCMESVKNGTYDYPKYTEEAKLNRKEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 3,726: Line 4,260:




>gb|ABQ44394.1|  hemagglutinin [Influenza A virus (A/New Jersey/1976(H1N1))]
>gb|AAL29714.1|  hemagglutinin [Influenza A virus (A/SW/MN/34893/01(H1N2))]
Length=566
Length=566


  Score = 1098 bits (2839),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1100 bits (2844),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 516/566 (91%), Positives = 545/566 (96%), Gaps = 0/566 (0%)
  Identities = 519/566 (91%), Positives = 544/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLL TFA  NADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             M+AILVVLLYTF TANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILLVLLCTFAATNADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MEAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRG+ PLHLGKCNIAGW+LGNPEC SL TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLLTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGIDPLHLGKCNIAGWLLGNPECGSLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPKTSSWPNH++N+GVTAACP+AGA SFY+NLIWLVKK NSYPKLSK
             QLSSVSSFERFEIFPK SSWPNH++NKGVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKENSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNKGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
             SY N+ KEVLVLWGIHHPSTS DQQSLYQN DAYVFVGSS YSKKFKPEIA RPKVRDQ
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ 240
Sbjct  181  SYTNNMEKEVLVLWGIHHPSTSTDQQSLYQNTDAYVFVGSSTYSKKFKPEIAARPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISD PVHDCNT CQTPK
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISD +HDCNTTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDAPVHDCNTKCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDASIHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIGKCPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGKCPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD +STQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             MVDGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVN VIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQRSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MVDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNPVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEF HKCD+TCMESV+NGTYDYPKYSEEAKL+RE+IDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFCHKCDDTCMESVRNGTYDYPKYSEEAKLSREKIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
             LVL+VSLGAISFWMCSNGSLQCRICI
             ++L+VSLGAISFWMCSNGSLQCRICI
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI 566
Sbjct  541  MILLVSLGAISFWMCSNGSLQCRICI 566




>gb|ACE77927.1|  hemagglutinin [Influenza A virus (A/swine/Korea/CAN01/2004(H1N1))]
>gb|ABR28658.1|  hemagglutinin [Influenza A virus (A/swine/Ontario/4/1981(H1N1))]
gb|ABW36355.1|  hemagglutinin [Influenza A virus (A/swine/Ontario/6/1981(H1N1))]
Length=566
Length=566


  Score = 1097 bits (2838),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1099 bits (2843),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 515/566 (90%), Positives = 547/566 (96%), Gaps = 0/566 (0%)
  Identities = 513/566 (90%), Positives = 546/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILVVLLYTFATA+ADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE+KHNGKLCK
             MKAIL+VLLYTF  ANADTLC+GYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILVVLLYTFATADADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENKHNGKLCK 60
Sbjct  1    MKAILLVLLYTFTAANADTLCVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRG+APLHLGKCNIAGW+LGNPECESL TASSWSYIVET +SDNGTCYPGDFI+YEELRE
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSY+VETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGIAPLHLGKCNIAGWLLGNPECESLVTASSWSYIVETPNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYVVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
            LSSVSSFERFEIFPK +SWPNH+++KGVTAACP+AGA SFY+NLIWLV+KGNSYPKLSK
            QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  HLSSVSSFERFEIFPKANSWPNHETDKGVTAACPYAGANSFYRNLIWLVQKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K KEVLV+WGIHHP TS DQQ+LYQNADAYVFVGSS+YSK+FKPEIA RPKVR Q
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
Sbjct  181  SYINNKKKEVLVIWGIHHPPTSTDQQTLYQNADAYVFVGSSKYSKRFKPEIAARPKVRGQ 240
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAF M+R +GSGII+SD PVHDCNTTCQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTP+HDC+TTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFPMKRGSGSGIIVSDAPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMSRGSGSGIIISDTPIHDCDTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 3,804: Line 4,339:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNS+IEKMNTQFTAVGKEF+ LEKR
             M+DGWYGYHHQN QGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSIIEKMNTQFTAVGKEFSQLEKR 420
Sbjct  361  MIDGWYGYHHQNGQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IE+LN KVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
Sbjct  421  IESLNNKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYST ASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTAASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 3,820: Line 4,355:




>gb|ABW36333.1|  hemagglutinin [Influenza A virus (A/swine/Ontario/2/1981(H1N1))]
>gb|AAL87868.1|AF455678_1 hemagglutinin [Influenza A virus (A/Swine/Minnesota/55551/00
(H1N2))]
Length=566
Length=566


  Score = 1097 bits (2838),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1099 bits (2843),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 513/566 (90%), Positives = 545/566 (96%), Gaps = 0/566 (0%)
  Identities = 518/566 (91%), Positives = 545/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLLYTF  ANADTLC+GYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MK ILVVLLYTF TA+ADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE+KHNGKLCK
Sbjct  1    MKAILLVLLYTFTAANADTLCVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKTILVVLLYTFTTADADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENKHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSY+VETS+SDNGTCYPGDFI+YEELRE
             LRGVAPLHLGKCNIAGW+LGNPECESL  ASSWSYIVET +SDNGTCYPGDFI+YEELRE
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYVVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECESLFEASSWSYIVETPNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
            QLSSVSSFERFEIFPK SSWPNH++N GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
            LSSVSSFERFEIFPK +SWPNHD++ GVTA+CP+AGAKSFY+NLIWLVKKG+SYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNIGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  HLSSVSSFERFEIFPKANSWPNHDTDSGVTASCPYAGAKSFYRNLIWLVKKGSSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
             SYINDK KEVLV+WGIHHP  S DQQ+LYQNADAYVFVGSS+YSK+FKPEIA RPKVRDQ
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ 240
Sbjct  181  SYINDKKKEVLVIWGIHHPPNSTDQQTLYQNADAYVFVGSSKYSKRFKPEIAARPKVRDQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTP+HDC+TTCQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMSRGSGSGIIISDTPIHDCDTTCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMTRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKL++ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLKMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQN QGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFN LEKR
Sbjct  361  MIDGWYGYHHQNGQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNQLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
             IE+LN KVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480
Sbjct  421  IESLNNKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYST ASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTAASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 3,867: Line 4,403:




>gb|ABW71503.1|  hemagglutinin [Influenza A virus (A/swine/Tennessee/2/1978(H1N1))]
>gb|ABY81426.1|  hemagglutinin [Influenza A virus (A/swine/Iowa/1/1986(H1N1))]
Length=566
Length=566


  Score = 1097 bits (2837),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1099 bits (2842),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 515/566 (90%), Positives = 544/566 (96%), Gaps = 0/566 (0%)
  Identities = 517/566 (91%), Positives = 546/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLL TF ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAIL+VLLYTF ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILLVLLCTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILLVLLYTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
             L G+APLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFPK SSWPNH++N+GVT ACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTVACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNAD+YVFVGSS+Y+KKFKPEIA RPKVR Q
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ 240
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADSYVFVGSSKYNKKFKPEIATRPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISD PVHDCNTTCQTPK
             GRMNYYWTLVEPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTPVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDAPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLVEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDTPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAIN+SLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINSSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQN QGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQN QGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNGQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNGQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Line 3,906: Line 4,442:


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYST ASS
             CFEFYHKCD+TCMESVKNGTYDY KYSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTAASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYLKYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 3,914: Line 4,450:




>gb|ABR28647.1|  hemagglutinin [Influenza A virus (A/swine/Nebraska/123/1977(H1N1))]
>gb|ABS49932.1|  hemagglutinin [Influenza A virus (A/swine/Ontario/1/1981(H1N1))]
Length=566
Length=566


  Score = 1097 bits (2837),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1099 bits (2842),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 515/566 (90%), Positives = 544/566 (96%), Gaps = 0/566 (0%)
  Identities = 513/566 (90%), Positives = 546/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLL TF ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAIL+VLLYTF ANADTLC+GYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILLVLLCTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILLVLLYTFTAANADTLCVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSY+VETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYVVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Line 3,933: Line 4,469:


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIAARPKVRGQ 240
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGI+ISD PVHDCNTTCQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTP+HDC+TTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIVISDAPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDTPIHDCDTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 3,961: Line 4,497:




>gb|ABW36344.1|  hemagglutinin [Influenza A virus (A/swine/Ontario/3/1981(H1N1))]
>gb|ABR28614.1|  hemagglutinin [Influenza A virus (A/swine/Kentucky/1/1976(H1N1))]
gb|ABV45838.1|  hemagglutinin [Influenza A virus (A/Wisconsin/301/1976(H1N1))]
gb|ABX58668.1|  hemagglutinin [Influenza A virus (A/swine/Wisconsin/30747/1976(H1N1))]
gb|ACK99410.1|  hemagglutinin [Influenza A virus (A/swine/Wisconsin/30954/1976(H1N1))]
Length=566
Length=566


  Score = 1097 bits (2836),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1099 bits (2842),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 512/566 (90%), Positives = 546/566 (96%), Gaps = 0/566 (0%)
  Identities = 516/566 (91%), Positives = 545/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLLYTF ANADTLC+GYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAIL+VLL TFA NADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILLVLLYTFTAANADTLCVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILLVLLCTFAATNADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSY+VETS+SDNGTCYPGDFI+YEELRE
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYVVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFPKTSSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Line 3,984: Line 4,523:


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTP+HDC+TTCQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R GSGIIISD PVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDTPIHDCDTTCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGPGSGIIISDAPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 3,992: Line 4,531:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQN QGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVI+KMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNGQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIKKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Line 4,000: Line 4,539:


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNRE+IDGVKLESTRIYQILAIYST ASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYST ASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREKIDGVKLESTRIYQILAIYSTAASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTAASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 4,008: Line 4,547:




>gb|ABU80232.1|  hemagglutinin [Influenza A virus (A/swine/Tennessee/86/1977(H1N1))]
>gb|ABR28537.1|  hemagglutinin [Influenza A virus (A/swine/Tennessee/10/1977(H1N1))]
Length=566
Length=566


  Score = 1097 bits (2836),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1098 bits (2839),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 514/566 (90%), Positives = 546/566 (96%), Gaps = 0/566 (0%)
  Identities = 515/566 (90%), Positives = 545/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKA+L+VLL TFA  NADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAIL+VLL TFA  NADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAMLLVLLCTFAATNADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILLVLLCTFAVTNADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+S+NGTCYPGDFI+YEELRE
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSY+VETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSNNGTCYPGDFINYEELRE 120
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYVVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Line 4,027: Line 4,566:


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+KGKEVLVLWGIHHPSTS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
Sbjct  181  SYVNNKGKEVLVLWGIHHPSTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ 240
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISD PVHDCNTTCQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R GSGIIISD PVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDAPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGPGSGIIISDAPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP++IG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVSIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQN QGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVI+KMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNGQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIKKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Line 4,055: Line 4,594:




>gb|ABR28669.1|  hemagglutinin [Influenza A virus (A/swine/Ontario/7/1981(H1N1))]
>gb|ABQ44394.1|  hemagglutinin [Influenza A virus (A/New Jersey/1976(H1N1))]
Length=566
Length=566


  Score = 1097 bits (2836),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1098 bits (2839),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 513/566 (90%), Positives = 545/566 (96%), Gaps = 0/566 (0%)
  Identities = 516/566 (91%), Positives = 545/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLLYTF ANADTLC+GYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAIL+VLL TFA NADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILLVLLYTFTAANADTLCVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILLVLLCTFAATNADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLLTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
             QLSSVSSFERFEIFPKTSSWPNH++N+GVTAACP+AGA SFY+NLIWLVKK NSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKENSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Line 4,078: Line 4,617:


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTP+HDC+TTCQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISD PVHDCNT CQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDTPIHDCDTTCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDAPVHDCNTKCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 4,086: Line 4,625:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQN QGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD +STQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNGQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQRSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
             IENLNKKVDDGFLDIWTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIY ILAIYST ASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYYILAIYSTAASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 4,102: Line 4,641:




>gb|ABY51204.1|  hemagglutinin [Influenza A virus (A/swine/Tennessee/4/1978(H1N1))]
>gb|ACE77927.1|  hemagglutinin [Influenza A virus (A/swine/Korea/CAN01/2004(H1N1))]
Length=566
Length=566


  Score = 1096 bits (2835),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1097 bits (2838),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 514/566 (90%), Positives = 544/566 (96%), Gaps = 0/566 (0%)
  Identities = 515/566 (90%), Positives = 547/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLL TF  ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAILVVLLYTFATA+ADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLE+KHNGKLCK
Sbjct  1    MKAILLVLLCTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILVVLLYTFATADADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLENKHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
             LRG+APLHLGKCNIAGW+LGNPECESL TASSWSYIVET +SDNGTCYPGDFI+YEELRE
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LRGIAPLHLGKCNIAGWLLGNPECESLVTASSWSYIVETPNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
            QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
            LSSVSSFERFEIFPK +SWPNH+++KGVTAACP+AGA SFY+NLIWLV+KGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180
Sbjct  121  HLSSVSSFERFEIFPKANSWPNHETDKGVTAACPYAGANSFYRNLIWLVQKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
             SYIN+K KEVLV+WGIHHP TS DQQ+LYQNADAYVFVGSS+YSK+FKPEIA RPKVR Q
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ 240
Sbjct  181  SYINNKKKEVLVIWGIHHPPTSTDQQTLYQNADAYVFVGSSKYSKRFKPEIAARPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISD PVHDCNTTCQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAF M+R +GSGII+SD PVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDAPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFPMKRGSGSGIIVSDAPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQN+HP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNVHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQN QGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNS+IEKMNTQFTAVGKEF+ LEKR
Sbjct  361  MIDGWYGYHHQNGQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSIIEKMNTQFTAVGKEFSQLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
             IE+LN KVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480
Sbjct  421  IESLNNKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYST ASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTAASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 4,149: Line 4,688:




>gb|ABS49921.1|  hemagglutinin [Influenza A virus (A/swine/Iowa/1/1977(H1N1))]
>gb|ABW36333.1|  hemagglutinin [Influenza A virus (A/swine/Ontario/2/1981(H1N1))]
Length=566
Length=566


  Score = 1096 bits (2834),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1097 bits (2838),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 513/566 (90%), Positives = 545/566 (96%), Gaps = 0/566 (0%)
  Identities = 513/566 (90%), Positives = 545/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLL TFA NADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAIL+VLLYTF ANADTLC+GYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILLVLLCTFAATNADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILLVLLYTFTAANADTLCVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSY+VETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYVVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPKTSSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKL+K
             QLSSVSSFERFEIFPK SSWPNH++N GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLNK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNIGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+KGKE+LVLWGIHHPSTS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
Sbjct  181  SYVNNKGKEILVLWGIHHPSTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ 240
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGI+ISD PVHDCNT CQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTP+HDC+TTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGILISDAPVHDCNTKCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMSRGSGSGIIISDTPIHDCDTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 4,196: Line 4,735:




>gb|ACQ42242.1|  hemagglutinin [Influenza A virus (A/Auckland/1/2009(H1N1))]
>gb|ABW71503.1|  hemagglutinin [Influenza A virus (A/swine/Tennessee/2/1978(H1N1))]
Length=524
Length=566


  Score = 1095 bits (2833),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1097 bits (2837),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 524/524 (100%), Positives = 524/524 (100%), Gaps = 0/524 (0%)
  Identities = 515/566 (90%), Positives = 544/566 (96%), Gaps = 0/566 (0%)


Query  43  VTHSVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSS 102
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK 60
             VTHSVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSS
             MKAIL+VLL TF  ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    VTHSVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSS 60
Sbjct  1    MKAILLVLLCTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  103  DNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFY 162
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE 120
             DNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFY
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  DNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFY 120
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  163 KNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSR 222
Query  121 QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK 180
             KNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSR
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  KNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSR 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  223 YSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGI 282
Query  181 SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ 240
             YSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGI
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
Sbjct  181  YSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGI 240
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ 240


Query  283 IISDTPVHDCNTTCQTPKGAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQ 342
Query  241 EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
            IISDTPVHDCNTTCQTPKGAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQ
            GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISD PVHDCNTTCQTPK
Sbjct  241  IISDTPVHDCNTTCQTPKGAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQ 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDAPVHDCNTTCQTPK 300


Query  343 SRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEK 402
Query  301 GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG 360
             SRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEK
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  SRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEK 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  403 MNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNL 462
Query  361 MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
             MNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNL
             M+DGWYGYHHQN QGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNL 420
Sbjct  361  MIDGWYGYHHQNGQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  463 YEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKL 522
Query  421 IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG 480
             YEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKL
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
Sbjct  421  YEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKL 480
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480
 
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
            CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYST ASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTAASS  540


Query  523 ESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI 566
Query  541 LVLVVSLGAISFWMCSNGSLQCRICI 566
             ESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI
             LVL+VSLGAISFWMCSNGSLQCRICI
Sbjct  481 ESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI 524
Sbjct  541 LVLLVSLGAISFWMCSNGSLQCRICI 566




>gb|ABR28581.1|  hemagglutinin [Influenza A virus (A/swine/Tennessee/82/1977(H1N1))]
>gb|ABR28647.1|  hemagglutinin [Influenza A virus (A/swine/Nebraska/123/1977(H1N1))]
gb|ABU80221.1|  hemagglutinin [Influenza A virus (A/swine/Tennessee/84/1977(H1N1))]
gb|ABU80243.1|  hemagglutinin [Influenza A virus (A/swine/Tennessee/87/1977(H1N1))]
gb|ABU80254.1|  hemagglutinin [Influenza A virus (A/swine/Tennessee/88/1977(H1N1))]
Length=566
Length=566


  Score = 1095 bits (2832),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1097 bits (2837),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 514/566 (90%), Positives = 544/566 (96%), Gaps = 0/566 (0%)
  Identities = 515/566 (90%), Positives = 544/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Line 4,261: Line 4,801:


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y+KKFKPEIA RPKVR Q
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ 240
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNKKFKPEIAARPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISD PVHDCNTTCQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGI+ISD PVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDAPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIVISDAPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP++IG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVSIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Line 4,289: Line 4,829:




>gb|ABU80410.1|  hemagglutinin [Influenza A virus (A/swine/Tennessee/48/1977(H1N1))]
>gb|ABW36344.1|  hemagglutinin [Influenza A virus (A/swine/Ontario/3/1981(H1N1))]
gb|ABW36322.1|  hemagglutinin [Influenza A virus (A/swine/Tennessee/23/1976(H1N1))]
Length=566
Length=566


  Score = 1095 bits (2831),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1097 bits (2836),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 514/566 (90%), Positives = 544/566 (96%), Gaps = 0/566 (0%)
  Identities = 512/566 (90%), Positives = 546/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAI +VLL TFA NADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAIL+VLLYTF ANADTLC+GYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAIPLVLLCTFAATNADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILLVLLYTFTAANADTLCVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSY+VETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYVVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPKTSSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKL+K
             QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLNK 180
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Line 4,313: Line 4,852:


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISD PVHDCNTTCQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTP+HDC+TTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDAPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDTPIHDCDTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 4,329: Line 4,868:


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYST ASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNRE+IDGVKLESTRIYQILAIYST ASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTAASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREKIDGVKLESTRIYQILAIYSTAASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 4,337: Line 4,876:




>gb|ABR28625.1|  hemagglutinin [Influenza A virus (A/swine/Minnesota/27/1976(H1N1))]
>gb|ABU80232.1|  hemagglutinin [Influenza A virus (A/swine/Tennessee/86/1977(H1N1))]
gb|ABU80188.1|  hemagglutinin [Influenza A virus (A/swine/Minnesota/24/1975(H1N1))]
Length=566
Length=566


  Score = 1095 bits (2831),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1097 bits (2836),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 514/566 (90%), Positives = 544/566 (96%), Gaps = 0/566 (0%)
  Identities = 514/566 (90%), Positives = 546/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLL TFA  NADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKA+L+VLL TFA  NADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILLVLLCTFAATNADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAMLLVLLCTFAATNADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+S+NGTCYPGDFI+YEELRE
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSNNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
             QLSSVSSFERFEIFPKTSSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKL+K
             QLSSVSSFERFEIFPKTSSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLNK 180
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK 180


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
             SY+N+KGKEVLVLWGIHHPSTS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ 240
Sbjct  181  SYVNNKGKEVLVLWGIHHPSTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISD PVHDCNT CQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISD PVHDCNTTCQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDAPVHDCNTKCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDAPVHDCNTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQNIHP++IG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNIHPVSIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Line 4,385: Line 4,923:




>gb|ACI48760.1|  hemagglutinin [Influenza A virus (A/swine/Shanghai/1/2007(H1N2))]
>gb|ABR28669.1|  hemagglutinin [Influenza A virus (A/swine/Ontario/7/1981(H1N1))]
Length=566
Length=566


  Score = 1094 bits (2829),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1097 bits (2836),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 514/566 (90%), Positives = 544/566 (96%), Gaps = 0/566 (0%)
  Identities = 513/566 (90%), Positives = 545/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAILVVLLY F  NADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAIL+VLLYTF  ANADTLC+GYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILVVLLYAFTRGNADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILLVLLYTFTAANADTLCVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDF +YEELRE
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFTNYEELRE 120
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Line 4,404: Line 4,942:


Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
             SYIN+K KEVLVLWGIHHPST+ DQQSLYQNAD YVFV +S+YS KFKP+IA RPKVR Q
             SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
Sbjct  181  SYINNKKKEVLVLWGIHHPSTNTDQQSLYQNADTYVFVATSKYSMKFKPKIAARPKVRGQ 240
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ 240


Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
             GRM+YYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVH+C+TTCQTPK
             GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISDTP+HDC+TTCQTPK
Sbjct  241  AGRMDYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHNCSTTCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDTPIHDCDTTCQTPK 300


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Line 4,416: Line 4,954:


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
             M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
             M+DGWYGYHHQN QGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420
Sbjct  361  MIDGWYGYHHQNGQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR 420


Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
             IENLNKKVDDG LD+WTYNAELLVLLENERTLDYHDSNV+NLYEKVR+QLKNNAKEIGNG
             IENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
Sbjct  421  IENLNKKVDDGLLDVWTYNAELLVLLENERTLDYHDSNVRNLYEKVRNQLKNNAKEIGNG 480
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG 480


Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
             CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNR+EIDGVKLESTRIYQILAIYSTVASS
             CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIY ILAIYST ASS
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNRKEIDGVKLESTRIYQILAIYSTVASS 540
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYYILAIYSTAASS 540


Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
Line 4,432: Line 4,970:




>gb|ABW86574.1|  hemagglutinin [Influenza A virus (A/swine/Tennessee/5/1978(H1N1))]
>gb|ABY51204.1|  hemagglutinin [Influenza A virus (A/swine/Tennessee/4/1978(H1N1))]
Length=566
Length=566


  Score = 1093 bits (2828),  Expect = 0.0, Method: Compositional matrix adjust.
  Score = 1096 bits (2835),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 513/566 (90%), Positives = 543/566 (95%), Gaps = 0/566 (0%)
  Identities = 514/566 (90%), Positives = 544/566 (96%), Gaps = 0/566 (0%)


Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
             MKAIL+VLL TF  ANADTLC+GYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
             MKAIL+VLL TF  ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILLVLLCTFTAANADTLCVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60
Sbjct  1    MKAILLVLLCTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK 60


Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
             L +APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
             L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LGRIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSDNGTCYPGDFINYEELRE 120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
Line 4,459: Line 4,997:


Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
             GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
             GAINTSLPFQN+HP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
Sbjct  301  GAINTSLPFQNVHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360


Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
Line 4,478: Line 5,016:
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI  566
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI  566


</pre>


>gb|ABS49921.1|  hemagglutinin [Influenza A virus (A/swine/Iowa/1/1977(H1N1))]
Length=566
Score = 1096 bits (2834),  Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/566 (90%), Positives = 545/566 (96%), Gaps = 0/566 (0%)
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
            MKAIL+VLL TFA  NADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
Sbjct  1    MKAILLVLLCTFAATNADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK  60
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
            L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSDNGTCYPGDFINYEELRE  120


Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
            QLSSVSSFERFEIFPKTSSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKL+K
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLNK  180


== Multiple Sequence Alignment ==
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
            SY+N+KGKE+LVLWGIHHPSTS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
Sbjct  181  SYVNNKGKEILVLWGIHHPSTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ  240
 
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
            GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGI+ISD PVHDCNT CQTPK
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGILISDAPVHDCNTKCQTPK  300


<pre>
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
gi|229396357_A/New_York/12/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
            GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
gi|229892708_A/Canada-AB/RV153      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG  360
gi|229396399_A/New_York/18/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
 
gi|229536064_A/New_York/20/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
gi|229536055_A/New_York/20/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
            M+DGWYGYHHQN QGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
gi|229396487_A/New_York/19/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Sbjct  361  MIDGWYGYHHQNGQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
gi|227977099_A/New_York/19/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
 
gi|229396410_A/New_York/31/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
gi|229396419_A/New_York/23/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
            IENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
gi|229396381_A/New_York/11/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG  480
gi|229396443_A/New_York/10/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
 
gi|229484031_A/Canada-ON/RV152      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
gi|229535797_A/New_York/22/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
            CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYST ASS
gi|229536129_A/New_York/13/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTAASS  540
gi|229536100_A/Massachusetts/0      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
 
gi|229535909_A/Massachusetts/0      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
gi|229535834_A/California/14/2      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
            LVL+VSLGAISFWMCSNGSLQCRICI
gi|229892704_A/Canada-ON/RV152      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI  566
gi|229598877_A/Ohio/07/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
 
gi|229396504_A/Ohio/07/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
 
gi|229396494_A/Ohio/07/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
>gb|ACQ42242.1| hemagglutinin [Influenza A virus (A/Auckland/1/2009(H1N1))]
gi|229892702_A/Canada-ON/RV152      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Length=524
gi|229783398_A/New_York/1682/2      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
 
gi|237511819_A/Mexico/4108/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Score = 1095 bits (2833),  Expect = 0.0, Method: Compositional matrix adjust.
gi|229536049_A/Arizona/02/2009      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVDLL 50
Identities = 524/524 (100%), Positives = 524/524 (100%), Gaps = 0/524 (0%)
gi|229536088_A/Indiana/09/2009      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
 
gi|229484027_A/Canada-NS/RV153      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Query  43  VTHSVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSS  102
gi|229892700_A/Canada-NS/RV153      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
            VTHSVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSS
gi|229892710_A/Canada-NS/RV153      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
Sbjct  1    VTHSVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSS  60
gi|237511821_A/Mexico/4115/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|237511811_A/Mexico/4482/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|237511799_A/Mexico/4486/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|237511817_A/Mexico/4603/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|237511795_A/Mexico/4604/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229783367_A/Korea/01/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229783377_A/New_York/1669/2      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229536022_A/Arizona/01/2009      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229536003_A/Kansas/02/2009      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229536121_A/Michigan/02/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229598896_A/Texas/15/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229609563_A/Catalonia/P154/      -------------------------ANNSTDTVDTVLEKNVTVTHSVNLL 25
gi|229299521_A/Texas/04/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|228860929_A/Netherlands/602      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229484029_A/Mexico/InDRE448      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229535997_A/South_Carolina/      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNIL 50
gi|229609557_A/Catalonia/P148/      ------------------------HANNSTDTVDTVLEKNVTVTHSVNIL 26
gi|229299515_A/Texas/04/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229396467_A/Texas/06/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229535816_A/Texas/09/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229535985_A/Texas/08/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229536075_A/Texas/07/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229368677_A/Denmark/513/200      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|227831826_A/Texas/04/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|227831774_A/Texas/05/2009        MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|227831776_A/California/06/2      MKAILVVMLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|227831759_A/California/05/2      MKAILVVMLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|227977104_A/California/10/2      MKAILVVMLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229536135_A/Colorado/03/200      MKAILVVMLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|228481046_A/Auckland/1/2009     ------------------------------------------VTHSVNLL 8
gi|237624327_A/swine/Alberta/O      MKAILVIMLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229536010_A/Kansas/03/2009      MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|228495370_A/Regensburg/Germ      ----------------------------------------VTVTHSVNLL 10
gi|229892706A/Mexico/InDRE4114      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229535949_A/California/04/2      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|227809830_A/California/04/2      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|229299517_A/California/07/2      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|228017758_A/California/08/2      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
gi|227977172_A/California/07/2      MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLL 50
                                                                              *****::*


gi|229396357_A/New_York/12/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
Query  103  DNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFY  162
gi|229892708_A/Canada-AB/RV153      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
            DNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFY
gi|229396399_A/New_York/18/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
Sbjct  61  DNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFY  120
gi|229536064_A/New_York/20/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
 
gi|229536055_A/New_York/20/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
Query  163  KNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSR  222
gi|229396487_A/New_York/19/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
            KNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSR
gi|227977099_A/New_York/19/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
Sbjct  121  KNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSR  180
gi|229396410_A/New_York/31/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
 
gi|229396419_A/New_York/23/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
Query  223  YSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGI  282
gi|229396381_A/New_York/11/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
            YSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGI
gi|229396443_A/New_York/10/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
Sbjct  181  YSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGI  240
gi|229484031_A/Canada-ON/RV152      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
 
gi|229535797_A/New_York/22/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
Query  283  IISDTPVHDCNTTCQTPKGAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQ  342
gi|229536129_A/New_York/13/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
            IISDTPVHDCNTTCQTPKGAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQ
gi|229536100_A/Massachusetts/0      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
Sbjct  241  IISDTPVHDCNTTCQTPKGAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQ  300
gi|229535909_A/Massachusetts/0      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
 
gi|229535834_A/California/14/2      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
Query  343  SRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEK  402
gi|229892704_A/Canada-ON/RV152      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
            SRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEK
gi|229598877_A/Ohio/07/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYVVETS 100
Sbjct  301  SRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEK  360
gi|229396504_A/Ohio/07/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
 
gi|229396494_A/Ohio/07/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
Query  403  MNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNL  462
gi|229892702_A/Canada-ON/RV152      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
            MNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNL
gi|229783398_A/New_York/1682/2      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
Sbjct  361  MNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNL  420
gi|237511819_A/Mexico/4108/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
 
gi|229536049_A/Arizona/02/2009      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
Query  463  YEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKL  522
gi|229536088_A/Indiana/09/2009      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
            YEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKL
gi|229484027_A/Canada-NS/RV153      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
Sbjct  421  YEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKL  480
gi|229892700_A/Canada-NS/RV153      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
 
gi|229892710_A/Canada-NS/RV153      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
Query  523  ESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI  566
gi|237511821_A/Mexico/4115/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
            ESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI
gi|237511811_A/Mexico/4482/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
Sbjct  481  ESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI  524
gi|237511799_A/Mexico/4486/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|237511817_A/Mexico/4603/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|237511795_A/Mexico/4604/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229783367_A/Korea/01/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229783377_A/New_York/1669/2      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229536022_A/Arizona/01/2009      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229536003_A/Kansas/02/2009      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229536121_A/Michigan/02/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229598896_A/Texas/15/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229609563_A/Catalonia/P154/      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 75
gi|229299521_A/Texas/04/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|228860929_A/Netherlands/602      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229484029_A/Mexico/InDRE448      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229535997_A/South_Carolina/      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229609557_A/Catalonia/P148/      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 76
gi|229299515_A/Texas/04/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229396467_A/Texas/06/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229535816_A/Texas/09/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229535985_A/Texas/08/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229536075_A/Texas/07/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229368677_A/Denmark/513/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|227831826_A/Texas/04/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|227831774_A/Texas/05/2009        EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|227831776_A/California/06/2      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|227831759_A/California/05/2      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|227977104_A/California/10/2      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229536135_A/Colorado/03/200      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|228481046_A/Auckland/1/2009      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 58
gi|237624327_A/swine/Alberta/O      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229536010_A/Kansas/03/2009      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|228495370_A/Regensburg/Germ      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 60
gi|229892706A/Mexico/InDRE4114      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETS 100
gi|229535949_A/California/04/2      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETP 100
gi|227809830_A/California/04/2      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETP 100
gi|229299517_A/California/07/2      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETP 100
gi|228017758_A/California/08/2      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETP 100
gi|227977172_A/California/07/2      EDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETP 100
                                    *********************************************:***.


gi|229396357_A/New_York/12/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229892708_A/Canada-AB/RV153      SSDKGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229396399_A/New_York/18/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229536064_A/New_York/20/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229536055_A/New_York/20/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229396487_A/New_York/19/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|227977099_A/New_York/19/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229396410_A/New_York/31/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229396419_A/New_York/23/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229396381_A/New_York/11/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229396443_A/New_York/10/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229484031_A/Canada-ON/RV152      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229535797_A/New_York/22/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229536129_A/New_York/13/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229536100_A/Massachusetts/0      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229535909_A/Massachusetts/0      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229535834_A/California/14/2      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229892704_A/Canada-ON/RV152      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229598877_A/Ohio/07/2009        SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHXSNKGVT 150
gi|229396504_A/Ohio/07/2009        SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229396494_A/Ohio/07/2009        SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229892702_A/Canada-ON/RV152      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229783398_A/New_York/1682/2      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|237511819_A/Mexico/4108/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229536049_A/Arizona/02/2009      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229536088_A/Indiana/09/2009      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGIT 150
gi|229484027_A/Canada-NS/RV153      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229892700_A/Canada-NS/RV153      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229892710_A/Canada-NS/RV153      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|237511821_A/Mexico/4115/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|237511811_A/Mexico/4482/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|237511799_A/Mexico/4486/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|237511817_A/Mexico/4603/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|237511795_A/Mexico/4604/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229783367_A/Korea/01/2009        SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229783377_A/New_York/1669/2      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229536022_A/Arizona/01/2009      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229536003_A/Kansas/02/2009      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229536121_A/Michigan/02/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229598896_A/Texas/15/2009        SSDNGTCYPGDFIDYEELREQLSSMSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229609563_A/Catalonia/P154/      SSDNGTCYPGDFIDYEELREQLSSMSSFERFEIFPKTSSWPNHDSNKGVT 125
gi|229299521_A/Texas/04/2009        SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|228860929_A/Netherlands/602      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229484029_A/Mexico/InDRE448      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229535997_A/South_Carolina/      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229609557_A/Catalonia/P148/      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 126
gi|229299515_A/Texas/04/2009        SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229396467_A/Texas/06/2009        SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229535816_A/Texas/09/2009        SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229535985_A/Texas/08/2009        SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229536075_A/Texas/07/2009        SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229368677_A/Denmark/513/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|227831826_A/Texas/04/2009        SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|227831774_A/Texas/05/2009        SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|227831776_A/California/06/2      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|227831759_A/California/05/2      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|227977104_A/California/10/2      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229536135_A/Colorado/03/200      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|228481046_A/Auckland/1/2009      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 108
gi|237624327_A/swine/Alberta/O      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229536010_A/Kansas/03/2009      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|228495370_A/Regensburg/Germ      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 110
gi|229892706A/Mexico/InDRE4114      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229535949_A/California/04/2      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|227809830_A/California/04/2      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|229299517_A/California/07/2      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|228017758_A/California/08/2      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
gi|227977172_A/California/07/2      SSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVT 150
                                    ***:********************:****************** ****:*


gi|229396357_A/New_York/12/200      XACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
>gb|ABR28581.1|  hemagglutinin [Influenza A virus (A/swine/Tennessee/82/1977(H1N1))]
gi|229892708_A/Canada-AB/RV153      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gb|ABU80221.1| hemagglutinin [Influenza A virus (A/swine/Tennessee/84/1977(H1N1))]
gi|229396399_A/New_York/18/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gb|ABU80243.1| hemagglutinin [Influenza A virus (A/swine/Tennessee/87/1977(H1N1))]
gi|229536064_A/New_York/20/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gb|ABU80254.1| hemagglutinin [Influenza A virus (A/swine/Tennessee/88/1977(H1N1))]
gi|229536055_A/New_York/20/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Length=566
gi|229396487_A/New_York/19/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
 
gi|227977099_A/New_York/19/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Score = 1095 bits (2832),  Expect = 0.0, Method: Compositional matrix adjust.
gi|229396410_A/New_York/31/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Identities = 514/566 (90%), Positives = 544/566 (96%), Gaps = 0/566 (0%)
gi|229396419_A/New_York/23/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
 
gi|229396381_A/New_York/11/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
gi|229396443_A/New_York/10/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
            MKAIL+VLL TF  ANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
gi|229484031_A/Canada-ON/RV152      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Sbjct  1    MKAILLVLLCTFTAANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK  60
gi|229535797_A/New_York/22/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
 
gi|229536129_A/New_York/13/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
gi|229536100_A/Massachusetts/0     AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
            L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
gi|229535909_A/Massachusetts/0     AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSDNGTCYPGDFINYEELRE  120
gi|229535834_A/California/14/2      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
 
gi|229892704_A/Canada-ON/RV152      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
gi|229598877_A/Ohio/07/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
            QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
gi|229396504_A/Ohio/07/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK  180
gi|229396494_A/Ohio/07/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
 
gi|229892702_A/Canada-ON/RV152      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
gi|229783398_A/New_York/1682/2      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
            SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
gi|237511819_A/Mexico/4108/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ  240
gi|229536049_A/Arizona/02/2009      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
 
gi|229536088_A/Indiana/09/2009      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
gi|229484027_A/Canada-NS/RV153      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
            GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISD PVHDCNTTCQTPK
gi|229892700_A/Canada-NS/RV153      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDAPVHDCNTTCQTPK  300
gi|229892710_A/Canada-NS/RV153      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
 
gi|237511821_A/Mexico/4115/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
gi|237511811_A/Mexico/4482/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
            GAINTSLPFQNIHP++IG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
gi|237511799_A/Mexico/4486/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Sbjct  301  GAINTSLPFQNIHPVSIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG  360
gi|237511817_A/Mexico/4603/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
 
gi|237511795_A/Mexico/4604/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
gi|229783367_A/Korea/01/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
            M+DGWYGYHHQN QGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
gi|229783377_A/New_York/1669/2      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Sbjct  361  MIDGWYGYHHQNGQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
gi|229536022_A/Arizona/01/2009      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
 
gi|229536003_A/Kansas/02/2009      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
gi|229536121_A/Michigan/02/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
            IENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
gi|229598896_A/Texas/15/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG  480
gi|229609563_A/Catalonia/P154/      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 175
 
gi|229299521_A/Texas/04/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
gi|228860929_A/Netherlands/602      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
            CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYST ASS
gi|229484029_A/Mexico/InDRE448      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTAASS  540
gi|229535997_A/South_Carolina/      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
 
gi|229609557_A/Catalonia/P148/      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 176
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
gi|229299515_A/Texas/04/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
            LVL+VSLGAISFWMCSNGSLQCRICI
gi|229396467_A/Texas/06/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI  566
gi|229535816_A/Texas/09/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
 
gi|229535985_A/Texas/08/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
 
gi|229536075_A/Texas/07/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
>gb|ABU80410.1| hemagglutinin [Influenza A virus (A/swine/Tennessee/48/1977(H1N1))]
gi|229368677_A/Denmark/513/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gb|ABW36322.1| hemagglutinin [Influenza A virus (A/swine/Tennessee/23/1976(H1N1))]
gi|227831826_A/Texas/04/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
Length=566
gi|227831774_A/Texas/05/2009        AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|227831776_A/California/06/2      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|227831759_A/California/05/2      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|227977104_A/California/10/2      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229536135_A/Colorado/03/200      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|228481046_A/Auckland/1/2009      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 158
gi|237624327_A/swine/Alberta/O      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229536010_A/Kansas/03/2009      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|228495370_A/Regensburg/Germ      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 160
gi|229892706A/Mexico/InDRE4114      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229535949_A/California/04/2      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|227809830_A/California/04/2      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|229299517_A/California/07/2      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|228017758_A/California/08/2      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
gi|227977172_A/California/07/2      AACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPS 200
                                    *************************************************


gi|229396357_A/New_York/12/200      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
Score = 1095 bits (2831),  Expect = 0.0, Method: Compositional matrix adjust.
gi|229892708_A/Canada-AB/RV153      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
Identities = 514/566 (90%), Positives = 544/566 (96%), Gaps = 0/566 (0%)
gi|229396399_A/New_York/18/200      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
 
gi|229536064_A/New_York/20/200      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
gi|229536055_A/New_York/20/200      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
            MKAI +VLL TFA  NADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
gi|229396487_A/New_York/19/200      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
Sbjct  1    MKAIPLVLLCTFAATNADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK  60
gi|227977099_A/New_York/19/200      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
 
gi|229396410_A/New_York/31/200      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
gi|229396419_A/New_York/23/200      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
            L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
gi|229396381_A/New_York/11/200      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSDNGTCYPGDFINYEELRE  120
gi|229396443_A/New_York/10/200      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
 
gi|229484031_A/Canada-ON/RV152      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
gi|229535797_A/New_York/22/200      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
            QLSSVSSFERFEIFPKTSSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKL+K
gi|229536129_A/New_York/13/200      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLNK  180
gi|229536100_A/Massachusetts/0     TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
 
gi|229535909_A/Massachusetts/0     TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
gi|229535834_A/California/14/2      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
            SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
gi|229892704_A/Canada-ON/RV152      TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ  240
gi|229598877_A/Ohio/07/2009        TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
 
gi|229396504_A/Ohio/07/2009        TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
gi|229396494_A/Ohio/07/2009        TSADQQSLYQNADAYVFVGTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
            GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISD PVHDCNTTCQTPK
gi|229892702_A/Canada-ON/RV152      TSADQQSLYQNADAYVFVGXSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDAPVHDCNTTCQTPK  300
gi|229783398_A/New_York/1682/2      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
 
gi|237511819_A/Mexico/4108/200      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
gi|229536049_A/Arizona/02/2009      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
            GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
gi|229536088_A/Indiana/09/2009      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG 360
gi|229484027_A/Canada-NS/RV153      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229892700_A/Canada-NS/RV153      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229892710_A/Canada-NS/RV153      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|237511821_A/Mexico/4115/200      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|237511811_A/Mexico/4482/200      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|237511799_A/Mexico/4486/200      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|237511817_A/Mexico/4603/200      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|237511795_A/Mexico/4604/200      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229783367_A/Korea/01/2009        TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229783377_A/New_York/1669/2      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229536022_A/Arizona/01/2009      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229536003_A/Kansas/02/2009      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229536121_A/Michigan/02/200      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229598896_A/Texas/15/2009        TSADQQSLYQNADAYVFVGSSRYSKKLKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229609563_A/Catalonia/P154/      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 225
gi|229299521_A/Texas/04/2009        TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|228860929_A/Netherlands/602      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229484029_A/Mexico/InDRE448      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229535997_A/South_Carolina/      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229609557_A/Catalonia/P148/      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 226
gi|229299515_A/Texas/04/2009        TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229396467_A/Texas/06/2009        TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229535816_A/Texas/09/2009        TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229535985_A/Texas/08/2009        TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229536075_A/Texas/07/2009        TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229368677_A/Denmark/513/200      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|227831826_A/Texas/04/2009        TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|227831774_A/Texas/05/2009        TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|227831776_A/California/06/2      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|227831759_A/California/05/2      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|227977104_A/California/10/2      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229536135_A/Colorado/03/200      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|228481046_A/Auckland/1/2009      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 208
gi|237624327_A/swine/Alberta/O      TSADQQSLYQNADANVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229536010_A/Kansas/03/2009      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|228495370_A/Regensburg/Germ      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 210
gi|229892706A/Mexico/InDRE4114      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRGQEGRMNYYWTL 250
gi|229535949_A/California/04/2      TSADQQSLYQNADTYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|227809830_A/California/04/2      TSADQQSLYQNADTYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|229299517_A/California/07/2      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|228017758_A/California/08/2      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTL 250
gi|227977172_A/California/07/2      TSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRXXEGRMNYYWTL 250
                                    *************: **** ******:*********** **********


gi|229396357_A/New_York/12/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
gi|229892708_A/Canada-AB/RV153      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
            M+DGWYGYHHQN QGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
gi|229396399_A/New_York/18/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  361  MIDGWYGYHHQNGQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
gi|229536064_A/New_York/20/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|229536055_A/New_York/20/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
gi|229396487_A/New_York/19/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
            IENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
gi|227977099_A/New_York/19/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG  480
gi|229396410_A/New_York/31/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|229396419_A/New_York/23/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
gi|229396381_A/New_York/11/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
            CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYST ASS
gi|229396443_A/New_York/10/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTAASS  540
gi|229484031_A/Canada-ON/RV152      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|229535797_A/New_York/22/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
gi|229536129_A/New_York/13/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
            LVL+VSLGAISFWMCSNGSLQCRICI
gi|229536100_A/Massachusetts/0      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI  566
gi|229535909_A/Massachusetts/0      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|229535834_A/California/14/2      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|229892704_A/Canada-ON/RV152      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
>gb|ABR28625.1| hemagglutinin [Influenza A virus (A/swine/Minnesota/27/1976(H1N1))]
gi|229598877_A/Ohio/07/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
gb|ABU80188.1| hemagglutinin [Influenza A virus (A/swine/Minnesota/24/1975(H1N1))]
gi|229396504_A/Ohio/07/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Length=566
gi|229396494_A/Ohio/07/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|229892702_A/Canada-ON/RV152      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Score = 1095 bits (2831),  Expect = 0.0, Method: Compositional matrix adjust.
gi|229783398_A/New_York/1682/2      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCDTTCQTPK 300
Identities = 514/566 (90%), Positives = 544/566 (96%), Gaps = 0/566 (0%)
gi|237511819_A/Mexico/4108/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|229536049_A/Arizona/02/2009      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
gi|229536088_A/Indiana/09/2009      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
            MKAIL+VLL TFA  NADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
gi|229484027_A/Canada-NS/RV153      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  1    MKAILLVLLCTFAATNADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK  60
gi|229892700_A/Canada-NS/RV153      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|229892710_A/Canada-NS/RV153      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
gi|237511821_A/Mexico/4115/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
            L G+APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
gi|237511811_A/Mexico/4482/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  61  LGGIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSDNGTCYPGDFINYEELRE  120
gi|237511799_A/Mexico/4486/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|237511817_A/Mexico/4603/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
gi|237511795_A/Mexico/4604/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
            QLSSVSSFERFEIFPKTSSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKL+K
gi|229783367_A/Korea/01/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  121  QLSSVSSFERFEIFPKTSSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLNK  180
gi|229783377_A/New_York/1669/2      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|229536022_A/Arizona/01/2009      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
gi|229536003_A/Kansas/02/2009      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
            SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
gi|229536121_A/Michigan/02/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ  240
gi|229598896_A/Texas/15/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|229609563_A/Catalonia/P154/      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 275
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
gi|229299521_A/Texas/04/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
            GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISD PVHDCNT CQTPK
gi|228860929_A/Netherlands/602      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDAPVHDCNTKCQTPK  300
gi|229484029_A/Mexico/InDRE448      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|229535997_A/South_Carolina/      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHECNTTCQTPK 300
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
gi|229609557_A/Catalonia/P148/      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHECNTTCQTPK 276
            GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
gi|229299515_A/Texas/04/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG  360
gi|229396467_A/Texas/06/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|229535816_A/Texas/09/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
gi|229535985_A/Texas/08/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
            M+DGWYGYHHQN QGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
gi|229536075_A/Texas/07/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  361  MIDGWYGYHHQNGQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
gi|229368677_A/Denmark/513/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|227831826_A/Texas/04/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
gi|227831774_A/Texas/05/2009        VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
            IENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
gi|227831776_A/California/06/2      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG  480
gi|227831759_A/California/05/2      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
 
gi|227977104_A/California/10/2      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
gi|229536135_A/Colorado/03/200      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
            CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYST ASS
gi|228481046_A/Auckland/1/2009      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 258
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTAASS  540
gi|237624327_A/swine/Alberta/O      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
gi|229536010_A/Kansas/03/2009      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
gi|228495370_A/Regensburg/Germ      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 260
gi|229892706A/Mexico/InDRE4114      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
gi|229535949_A/California/04/2      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
gi|227809830_A/California/04/2      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
gi|229299517_A/California/07/2      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
gi|228017758_A/California/08/2      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
gi|227977172_A/California/07/2      VEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK 300
                                    ****************************************:*:*******


gi|229396357_A/New_York/12/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
gi|229892708_A/Canada-AB/RV153      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
            LVL+VSLGAISFWMCSNGSLQCRICI
gi|229396399_A/New_York/18/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI  566
gi|229536064_A/New_York/20/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
 
gi|229536055_A/New_York/20/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
 
gi|229396487_A/New_York/19/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
>gb|ACI48760.1| hemagglutinin [Influenza A virus (A/swine/Shanghai/1/2007(H1N2))]
gi|227977099_A/New_York/19/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Length=566
gi|229396410_A/New_York/31/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
 
gi|229396419_A/New_York/23/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Score = 1094 bits (2829),  Expect = 0.0, Method: Compositional matrix adjust.
gi|229396381_A/New_York/11/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Identities = 514/566 (90%), Positives = 544/566 (96%), Gaps = 0/566 (0%)
gi|229396443_A/New_York/10/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
 
gi|229484031_A/Canada-ON/RV152      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
gi|229535797_A/New_York/22/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
            MKAILVVLLY F  NADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
gi|229536129_A/New_York/13/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Sbjct  1    MKAILVVLLYAFTRGNADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK  60
gi|229536100_A/Massachusetts/0     GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
 
gi|229535909_A/Massachusetts/0     GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
gi|229535834_A/California/14/2      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
            LRGVAPLHLGKCNIAGW+LGNPECE L TASSWSYIVETS+SDNGTCYPGDF +YEELRE
gi|229892704_A/Canada-ON/RV152      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Sbjct  61  LRGVAPLHLGKCNIAGWLLGNPECELLFTASSWSYIVETSNSDNGTCYPGDFTNYEELRE  120
gi|229598877_A/Ohio/07/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
 
gi|229396504_A/Ohio/07/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
gi|229396494_A/Ohio/07/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
            QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
gi|229892702_A/Canada-ON/RV152      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK  180
gi|229783398_A/New_York/1682/2      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
 
gi|237511819_A/Mexico/4108/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
gi|229536049_A/Arizona/02/2009      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
            SYIN+K KEVLVLWGIHHPST+ DQQSLYQNAD YVFV +S+YS KFKP+IA RPKVR Q
gi|229536088_A/Indiana/09/2009      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Sbjct  181  SYINNKKKEVLVLWGIHHPSTNTDQQSLYQNADTYVFVATSKYSMKFKPKIAARPKVRGQ  240
gi|229484027_A/Canada-NS/RV153      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
 
gi|229892700_A/Canada-NS/RV153      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
gi|229892710_A/Canada-NS/RV153      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
            GRM+YYWTLVEPGD ITFEATGNLVVPRYAFAM+R +GSGIIISDTPVH+C+TTCQTPK
gi|237511821_A/Mexico/4115/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Sbjct  241  AGRMDYYWTLVEPGDTITFEATGNLVVPRYAFAMKRGSGSGIIISDTPVHNCSTTCQTPK  300
gi|237511811_A/Mexico/4482/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
 
gi|237511799_A/Mexico/4486/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
gi|237511817_A/Mexico/4603/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
            GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
gi|237511795_A/Mexico/4604/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG  360
gi|229783367_A/Korea/01/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229783377_A/New_York/1669/2      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229536022_A/Arizona/01/2009      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229536003_A/Kansas/02/2009      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229536121_A/Michigan/02/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229598896_A/Texas/15/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229609563_A/Catalonia/P154/      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 325
gi|229299521_A/Texas/04/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|228860929_A/Netherlands/602      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229484029_A/Mexico/InDRE448      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229535997_A/South_Carolina/      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229609557_A/Catalonia/P148/      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 326
gi|229299515_A/Texas/04/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229396467_A/Texas/06/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229535816_A/Texas/09/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229535985_A/Texas/08/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229536075_A/Texas/07/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229368677_A/Denmark/513/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|227831826_A/Texas/04/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|227831774_A/Texas/05/2009        GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|227831776_A/California/06/2      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|227831759_A/California/05/2      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|227977104_A/California/10/2      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229536135_A/Colorado/03/200      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|228481046_A/Auckland/1/2009      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 308
gi|237624327_A/swine/Alberta/O      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229536010_A/Kansas/03/2009      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|228495370_A/Regensburg/Germ      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 310
gi|229892706A/Mexico/InDRE4114      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAI 350
gi|229535949_A/California/04/2      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNIPSIQSRGLFGAI 350
gi|227809830_A/California/04/2      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNIPSIQSRGLFGAI 350
gi|229299517_A/California/07/2      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNIPSIQSRGLFGAI 350
gi|228017758_A/California/08/2      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNIPSIQSRGLFGAI 350
gi|227977172_A/California/07/2      GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNIPSIQSRGLFGAI 350
                                    *************************************:************


gi|229396357_A/New_York/12/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
gi|229892708_A/Canada-AB/RV153      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
            M+DGWYGYHHQNEQGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
gi|229396399_A/New_York/18/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Sbjct  361  MIDGWYGYHHQNEQGSGYAADRKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
gi|229536064_A/New_York/20/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
 
gi|229536055_A/New_York/20/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
gi|229396487_A/New_York/19/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
            IENLNKKVDDG LD+WTYNAELLVLLENERTLDYHDSNV+NLYEKVR+QLKNNAKEIGNG
gi|227977099_A/New_York/19/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Sbjct  421  IENLNKKVDDGLLDVWTYNAELLVLLENERTLDYHDSNVRNLYEKVRNQLKNNAKEIGNG  480
gi|229396410_A/New_York/31/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
 
gi|229396419_A/New_York/23/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
gi|229396381_A/New_York/11/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
            CFEFYHKCD+TCMESVKNGTYDYPKYSEEAKLNR+EIDGVKLESTRIYQILAIYSTVASS
gi|229396443_A/New_York/10/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEEAKLNRKEIDGVKLESTRIYQILAIYSTVASS  540
gi|229484031_A/Canada-ON/RV152      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
 
gi|229535797_A/New_York/22/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
gi|229536129_A/New_York/13/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
            LVL+VSLGAISFWMCSNGSLQCRICI
gi|229536100_A/Massachusetts/0      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI  566
gi|229535909_A/Massachusetts/0      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
 
gi|229535834_A/California/14/2      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
 
gi|229892704_A/Canada-ON/RV152      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
>gb|ABW86574.1| hemagglutinin [Influenza A virus (A/swine/Tennessee/5/1978(H1N1))]
gi|229598877_A/Ohio/07/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Length=566
gi|229396504_A/Ohio/07/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
 
gi|229396494_A/Ohio/07/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Score = 1093 bits (2828),  Expect = 0.0, Method: Compositional matrix adjust.
gi|229892702_A/Canada-ON/RV152      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Identities = 513/566 (90%), Positives = 543/566 (95%), Gaps = 0/566 (0%)
gi|229783398_A/New_York/1682/2      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
 
gi|237511819_A/Mexico/4108/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Query  1    MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK  60
gi|229536049_A/Arizona/02/2009      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
            MKAIL+VLL TF  ANADTLC+GYHANNSTDTVDTVLEKNVTVTHSVNLLED+HNGKLCK
gi|229536088_A/Indiana/09/2009      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
Sbjct  1   MKAILLVLLCTFTAANADTLCVGYHANNSTDTVDTVLEKNVTVTHSVNLLEDRHNGKLCK  60
gi|229484027_A/Canada-NS/RV153      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVV 400
gi|229892700_A/Canada-NS/RV153      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVV 400
gi|229892710_A/Canada-NS/RV153      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVV 400
gi|237511821_A/Mexico/4115/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|237511811_A/Mexico/4482/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|237511799_A/Mexico/4486/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|237511817_A/Mexico/4603/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|237511795_A/Mexico/4604/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229783367_A/Korea/01/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229783377_A/New_York/1669/2      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229536022_A/Arizona/01/2009      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229536003_A/Kansas/02/2009      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229536121_A/Michigan/02/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229598896_A/Texas/15/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229609563_A/Catalonia/P154/      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 375
gi|229299521_A/Texas/04/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|228860929_A/Netherlands/602      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229484029_A/Mexico/InDRE448      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229535997_A/South_Carolina/      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229609557_A/Catalonia/P148/      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 376
gi|229299515_A/Texas/04/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229396467_A/Texas/06/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229535816_A/Texas/09/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229535985_A/Texas/08/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229536075_A/Texas/07/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229368677_A/Denmark/513/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|227831826_A/Texas/04/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|227831774_A/Texas/05/2009        AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|227831776_A/California/06/2      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|227831759_A/California/05/2      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|227977104_A/California/10/2      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229536135_A/Colorado/03/200      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|228481046_A/Auckland/1/2009      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 358
gi|237624327_A/swine/Alberta/O      VGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229536010_A/Kansas/03/2009      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|228495370_A/Regensburg/Germ      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 360
gi|229892706A/Mexico/InDRE4114      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229535949_A/California/04/2      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|227809830_A/California/04/2      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|229299517_A/California/07/2      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|228017758_A/California/08/2      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
gi|227977172_A/California/07/2      AGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVI 400
                                    .************************************************:


gi|229396357_A/New_York/12/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
Query  61  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELRE  120
gi|229892708_A/Canada-AB/RV153      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
            L  +APLHLGKCNIAGW+LGNPECE L T SSWSYIVETS+SDNGTCYPGDFI+YEELRE
gi|229396399_A/New_York/18/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
Sbjct  61  LGRIAPLHLGKCNIAGWLLGNPECELLFTVSSWSYIVETSNSDNGTCYPGDFINYEELRE  120
gi|229536064_A/New_York/20/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
 
gi|229536055_A/New_York/20/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
Query  121  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK  180
gi|229396487_A/New_York/19/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
            QLSSVSSFERFEIFPK SSWPNH++N+GVTAACP+AGA SFY+NLIWLVKKGNSYPKLSK
gi|227977099_A/New_York/19/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
Sbjct  121  QLSSVSSFERFEIFPKASSWPNHETNRGVTAACPYAGANSFYRNLIWLVKKGNSYPKLSK  180
gi|229396410_A/New_York/31/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
 
gi|229396419_A/New_York/23/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
Query  181  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQ  240
gi|229396381_A/New_York/11/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
            SY+N+KGKEVLVLWGIHHP TS DQQSLYQNADAYVFVGSS+Y++KFKPEIA RPKVR Q
gi|229396443_A/New_York/10/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
Sbjct  181  SYVNNKGKEVLVLWGIHHPPTSTDQQSLYQNADAYVFVGSSKYNRKFKPEIAARPKVRGQ  240
gi|229484031_A/Canada-ON/RV152      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
 
gi|229535797_A/New_York/22/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
Query  241  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK  300
gi|229536129_A/New_York/13/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
            GRMNYYWTL+EPGD ITFEATGNLVVPRYAFAM R +GSGIIISD PVHDCNTTCQTPK
gi|229536100_A/Massachusetts/0      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
Sbjct  241  AGRMNYYWTLIEPGDTITFEATGNLVVPRYAFAMNRGSGSGIIISDAPVHDCNTTCQTPK  300
gi|229535909_A/Massachusetts/0      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
 
gi|229535834_A/California/14/2      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
Query  301  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNVPSIQSRGLFGAIAGFIEGGWTG  360
gi|229892704_A/Canada-ON/RV152      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
            GAINTSLPFQNIHP+TIG+CPKYVKSTKLR+ATGLRN+PSIQSRGLFGAIAGFIEGGWTG
gi|229598877_A/Ohio/07/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKIDDGFLDIWTYNAELLVLLENER 450
Sbjct  301  GAINTSLPFQNIHPVTIGECPKYVKSTKLRMATGLRNIPSIQSRGLFGAIAGFIEGGWTG  360
gi|229396504_A/Ohio/07/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKIDDGFLDIWTYNAELLVLLENER 450
 
gi|229396494_A/Ohio/07/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKIDDGFLDIWTYNAELLVLLENER 450
Query  361  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
gi|229892702_A/Canada-ON/RV152      EKMNTQFTAVGKEFNHLEKRIENLNKKIDDGFLDIWTYNAELLVLLENER 450
            M+DGWYGYHHQN QGSGYAAD KSTQNAID ITNKVNSVIEKMNTQFTAVGKEFNHLEKR
gi|229783398_A/New_York/1682/2      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
Sbjct  361  MIDGWYGYHHQNGQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNHLEKR  420
gi|237511819_A/Mexico/4108/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLILLENER 450
gi|229536049_A/Arizona/02/2009      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229536088_A/Indiana/09/2009      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229484027_A/Canada-NS/RV153      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229892700_A/Canada-NS/RV153      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229892710_A/Canada-NS/RV153      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|237511821_A/Mexico/4115/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|237511811_A/Mexico/4482/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|237511799_A/Mexico/4486/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|237511817_A/Mexico/4603/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|237511795_A/Mexico/4604/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229783367_A/Korea/01/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229783377_A/New_York/1669/2      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229536022_A/Arizona/01/2009      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229536003_A/Kansas/02/2009      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229536121_A/Michigan/02/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229598896_A/Texas/15/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229609563_A/Catalonia/P154/      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 425
gi|229299521_A/Texas/04/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|228860929_A/Netherlands/602      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229484029_A/Mexico/InDRE448      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229535997_A/South_Carolina/      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229609557_A/Catalonia/P148/      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 426
gi|229299515_A/Texas/04/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229396467_A/Texas/06/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229535816_A/Texas/09/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229535985_A/Texas/08/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229536075_A/Texas/07/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229368677_A/Denmark/513/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|227831826_A/Texas/04/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|227831774_A/Texas/05/2009        EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|227831776_A/California/06/2      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|227831759_A/California/05/2      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|227977104_A/California/10/2      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229536135_A/Colorado/03/200      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|228481046_A/Auckland/1/2009      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 408
gi|237624327_A/swine/Alberta/O      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229536010_A/Kansas/03/2009      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|228495370_A/Regensburg/Germ      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 410
gi|229892706A/Mexico/InDRE4114      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229535949_A/California/04/2      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|227809830_A/California/04/2      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|229299517_A/California/07/2      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|228017758_A/California/08/2      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
gi|227977172_A/California/07/2      EKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENER 450
                                    ***************************:***************:******


gi|229396357_A/New_York/12/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
Query  421  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG  480
gi|229892708_A/Canada-AB/RV153      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
            IENLNKKVDDGFLD+WTYNAELLVLLENERTLD+HDSNVKNLYEKVRSQL+NNAKEIGNG
gi|229396399_A/New_York/18/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
Sbjct  421  IENLNKKVDDGFLDVWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLRNNAKEIGNG  480
gi|229536064_A/New_York/20/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
 
gi|229536055_A/New_York/20/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
Query  481  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS  540
gi|229396487_A/New_York/19/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
            CFEFYHKCD+TCMESVKNGTYDYPKYSEE+KLNREEIDGVKLESTRIYQILAIYST ASS
gi|227977099_A/New_York/19/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
Sbjct  481  CFEFYHKCDDTCMESVKNGTYDYPKYSEESKLNREEIDGVKLESTRIYQILAIYSTAASS  540
gi|229396410_A/New_York/31/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229396419_A/New_York/23/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229396381_A/New_York/11/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229396443_A/New_York/10/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229484031_A/Canada-ON/RV152      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229535797_A/New_York/22/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229536129_A/New_York/13/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229536100_A/Massachusetts/0      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229535909_A/Massachusetts/0      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229535834_A/California/14/2      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229892704_A/Canada-ON/RV152      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229598877_A/Ohio/07/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229396504_A/Ohio/07/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229396494_A/Ohio/07/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229892702_A/Canada-ON/RV152      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229783398_A/New_York/1682/2      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|237511819_A/Mexico/4108/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229536049_A/Arizona/02/2009      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229536088_A/Indiana/09/2009      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229484027_A/Canada-NS/RV153      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229892700_A/Canada-NS/RV153      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229892710_A/Canada-NS/RV153      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|237511821_A/Mexico/4115/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|237511811_A/Mexico/4482/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|237511799_A/Mexico/4486/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|237511817_A/Mexico/4603/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|237511795_A/Mexico/4604/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229783367_A/Korea/01/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229783377_A/New_York/1669/2      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229536022_A/Arizona/01/2009      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229536003_A/Kansas/02/2009      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229536121_A/Michigan/02/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229598896_A/Texas/15/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229609563_A/Catalonia/P154/      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 475
gi|229299521_A/Texas/04/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|228860929_A/Netherlands/602      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229484029_A/Mexico/InDRE448      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229535997_A/South_Carolina/      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229609557_A/Catalonia/P148/      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 476
gi|229299515_A/Texas/04/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229396467_A/Texas/06/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229535816_A/Texas/09/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229535985_A/Texas/08/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229536075_A/Texas/07/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229368677_A/Denmark/513/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|227831826_A/Texas/04/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|227831774_A/Texas/05/2009        TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|227831776_A/California/06/2      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|227831759_A/California/05/2      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|227977104_A/California/10/2      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229536135_A/Colorado/03/200      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|228481046_A/Auckland/1/2009      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 458
gi|237624327_A/swine/Alberta/O      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229536010_A/Kansas/03/2009      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|228495370_A/Regensburg/Germ      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 460
gi|229892706A/Mexico/InDRE4114      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229535949_A/California/04/2      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|227809830_A/California/04/2      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|229299517_A/California/07/2      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|228017758_A/California/08/2      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
gi|227977172_A/California/07/2      TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGT 500
                                    **************************************************


gi|229396357_A/New_York/12/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
Query  541  LVLVVSLGAISFWMCSNGSLQCRICI  566
gi|229892708_A/Canada-AB/RV153      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
            LVL+VSLGAISFWMCSNGSLQCRICI
gi|229396399_A/New_York/18/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
Sbjct  541  LVLLVSLGAISFWMCSNGSLQCRICI  566
gi|229536064_A/New_York/20/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229536055_A/New_York/20/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229396487_A/New_York/19/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|227977099_A/New_York/19/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229396410_A/New_York/31/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229396419_A/New_York/23/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229396381_A/New_York/11/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229396443_A/New_York/10/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229484031_A/Canada-ON/RV152      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229535797_A/New_York/22/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229536129_A/New_York/13/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229536100_A/Massachusetts/0      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229535909_A/Massachusetts/0      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229535834_A/California/14/2      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229892704_A/Canada-ON/RV152      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229598877_A/Ohio/07/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229396504_A/Ohio/07/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229396494_A/Ohio/07/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229892702_A/Canada-ON/RV152      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229783398_A/New_York/1682/2      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|237511819_A/Mexico/4108/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229536049_A/Arizona/02/2009      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229536088_A/Indiana/09/2009      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229484027_A/Canada-NS/RV153      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229892700_A/Canada-NS/RV153      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229892710_A/Canada-NS/RV153      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|237511821_A/Mexico/4115/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|237511811_A/Mexico/4482/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|237511799_A/Mexico/4486/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|237511817_A/Mexico/4603/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|237511795_A/Mexico/4604/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229783367_A/Korea/01/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229783377_A/New_York/1669/2      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229536022_A/Arizona/01/2009      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229536003_A/Kansas/02/2009      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229536121_A/Michigan/02/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229598896_A/Texas/15/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229609563_A/Catalonia/P154/      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 525
gi|229299521_A/Texas/04/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|228860929_A/Netherlands/602      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229484029_A/Mexico/InDRE448      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229535997_A/South_Carolina/      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229609557_A/Catalonia/P148/      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 526
gi|229299515_A/Texas/04/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229396467_A/Texas/06/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229535816_A/Texas/09/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229535985_A/Texas/08/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229536075_A/Texas/07/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229368677_A/Denmark/513/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|227831826_A/Texas/04/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|227831774_A/Texas/05/2009        YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|227831776_A/California/06/2      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|227831759_A/California/05/2      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|227977104_A/California/10/2      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229536135_A/Colorado/03/200      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|228481046_A/Auckland/1/2009      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 508
gi|237624327_A/swine/Alberta/O      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229536010_A/Kansas/03/2009      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|228495370_A/Regensburg/Germ      YDYPKYSEEAKLNREEIDGVK----------------------------- 481
gi|229892706A/Mexico/InDRE4114      YDYPKYSEEAKLNREEIDGVKLESTRFYQILAIYSTVASSLVLVVSLGAI 550
gi|229535949_A/California/04/2      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|227809830_A/California/04/2      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|229299517_A/California/07/2      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|228017758_A/California/08/2      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
gi|227977172_A/California/07/2      YDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAI 550
                                    *********************                           


gi|229396357_A/New_York/12/200      SFWMCSNGSLQCRICI 566
gi|229892708_A/Canada-AB/RV153      SFWMCSNGSLQCRICI 566
gi|229396399_A/New_York/18/200      SFWMCSNGSLQCRICI 566
gi|229536064_A/New_York/20/200      SFWMCSNGSLQCRICI 566
gi|229536055_A/New_York/20/200      SFWMCSNGSLQCRICI 566
gi|229396487_A/New_York/19/200      SFWMCSNGSLQCRICI 566
gi|227977099_A/New_York/19/200      SFWMCSNGSLQCRICI 566
gi|229396410_A/New_York/31/200      SFWMCSNGSLQCRICI 566
gi|229396419_A/New_York/23/200      SFWMCSNGSLQCRICI 566
gi|229396381_A/New_York/11/200      SFWMCSNGSLQCRICI 566
gi|229396443_A/New_York/10/200      SFWMCSNGSLQCRICI 566
gi|229484031_A/Canada-ON/RV152      SFWMCSNGSLQCRICI 566
gi|229535797_A/New_York/22/200      SFWMCSNGSLQCRICI 566
gi|229536129_A/New_York/13/200      SFWMCSNGSLQCRICI 566
gi|229536100_A/Massachusetts/0      SFWMCSNGSLQCRICI 566
gi|229535909_A/Massachusetts/0      SFWMCSNGSLQCRICI 566
gi|229535834_A/California/14/2      SFWMCSNGSLQCRICI 566
gi|229892704_A/Canada-ON/RV152      SFWMCSNGSLQCRICI 566
gi|229598877_A/Ohio/07/2009        SFWMCSNGSLQCRICI 566
gi|229396504_A/Ohio/07/2009        SFWMCSNGSLQCRICI 566
gi|229396494_A/Ohio/07/2009        SFWMCSNGSLQCRICI 566
gi|229892702_A/Canada-ON/RV152      SFWMCSNGSLQCRICI 566
gi|229783398_A/New_York/1682/2      SFWMCSNGSLQCRICI 566
gi|237511819_A/Mexico/4108/200      SFWMCSNGSLQCRICI 566
gi|229536049_A/Arizona/02/2009      SFWMCSNGSLQCRICI 566
gi|229536088_A/Indiana/09/2009      SFWMCSNGSLQCRICI 566
gi|229484027_A/Canada-NS/RV153      SFWMCSNGSLQCRICI 566
gi|229892700_A/Canada-NS/RV153      SFWMCSNGSLQCRICI 566
gi|229892710_A/Canada-NS/RV153      SFWMCSNGSLQCRICI 566
gi|237511821_A/Mexico/4115/200      SFWMCSNGSLQCRICI 566
gi|237511811_A/Mexico/4482/200      SFWMCSNGSLQCRICI 566
gi|237511799_A/Mexico/4486/200      SFWMCSNGSLQCRICI 566
gi|237511817_A/Mexico/4603/200      SFWMCSNGSLQCRICI 566
gi|237511795_A/Mexico/4604/200      SFWMCSNGSLQCRICI 566
gi|229783367_A/Korea/01/2009        SFWMCSNGSLQCRICI 566
gi|229783377_A/New_York/1669/2      SFWMCSNGSLQCRICI 566
gi|229536022_A/Arizona/01/2009      SFWMCSNGSLQCRICI 566
gi|229536003_A/Kansas/02/2009      SFWMCSNGSLQCRICI 566
gi|229536121_A/Michigan/02/200      SFWMCSNGSLQCRICI 566
gi|229598896_A/Texas/15/2009        SFWMCSNGSLQCRICI 566
gi|229609563_A/Catalonia/P154/      SFWMCSNG-------- 533
gi|229299521_A/Texas/04/2009        SFWMCSNGSLQCRICI 566
gi|228860929_A/Netherlands/602      SFWMCSNGSLQCRICI 566
gi|229484029_A/Mexico/InDRE448      SFWMCSNGSLQCRICI 566
gi|229535997_A/South_Carolina/      SFWMCSNGSLQCRICI 566
gi|229609557_A/Catalonia/P148/      SFWMCSNG-------- 534
gi|229299515_A/Texas/04/2009        SFWMCSNGSLQCRICI 566
gi|229396467_A/Texas/06/2009        SFWMCSNGSLQCRICI 566
gi|229535816_A/Texas/09/2009        SFWMCSNGSLQCRICI 566
gi|229535985_A/Texas/08/2009        SFWMCSNGSLQCRICI 566
gi|229536075_A/Texas/07/2009        SFWMCSNGSLQCRICI 566
gi|229368677_A/Denmark/513/200      SFWMCSNGSLQCRICI 566
gi|227831826_A/Texas/04/2009        SFWMCSNGSLQCRICI 566
gi|227831774_A/Texas/05/2009        SFWMCSNGSLQCRICI 566
gi|227831776_A/California/06/2      SFWMCSNGSLQCRICI 566
gi|227831759_A/California/05/2      SFWMCSNGSLQCRICI 566
gi|227977104_A/California/10/2      SFWMCSNGSLQCRICI 566
gi|229536135_A/Colorado/03/200      SFWMCSNGSLQCRICI 566
gi|228481046_A/Auckland/1/2009      SFWMCSNGSLQCRICI 524
gi|237624327_A/swine/Alberta/O      SFWMCSNGSLQCRICI 566
gi|229536010_A/Kansas/03/2009      SFWMCSNGSLQCRICI 566
gi|228495370_A/Regensburg/Germ      ----------------
gi|229892706A/Mexico/InDRE4114      SFWMCSNGSLQCRICI 566
gi|229535949_A/California/04/2      SFWMCSNGSLQCRICI 566
gi|227809830_A/California/04/2      SFWMCSNGSLQCRICI 566
gi|229299517_A/California/07/2      SFWMCSNGSLQCRICI 566
gi|228017758_A/California/08/2      SFWMCSNGSLQCRICI 566
gi|227977172_A/California/07/2      SFWMCSNGSLQCRICI 566
</pre>
</pre>
Retrieved from "https://proteopedia.openfox.io/w/User:Michael_Strong/H1N1/HA"