1vnh: Difference between revisions

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New page: left|200px<br /><applet load="1vnh" size="450" color="white" frame="true" align="right" spinBox="true" caption="1vnh, resolution 2.11Å" /> '''CHLOROPEROXIDASE FRO...
 
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[[Image:1vnh.jpg|left|200px]]<br /><applet load="1vnh" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1vnh, resolution 2.11&Aring;" />
'''CHLOROPEROXIDASE FROM THE FUNGUS CURVULARIA INAEQUALIS: MUTANT H496A'''<br />


==Overview==
==CHLOROPEROXIDASE FROM THE FUNGUS CURVULARIA INAEQUALIS: MUTANT H496A==
The X-ray structures of the chloroperoxidase from Curvularia inaequalis, heterologously expressed in Saccharomyces cerevisiae, have been determined, both in its apo and in its holo forms at 1.66 and 2.11 A resolution, respectively. The crystal structures reveal that the overall structure of, this enzyme remains nearly unaltered, particularly at the metal binding, site. At the active site of the apo-chloroperoxidase structure a clearly, defined sulfate ion was found, partially stabilised through electrostatic, interactions and hydrogen bonds with positively charged residues involved, in the interactions with the vanadate in the native protein. The vanadate, binding pocket seems to form a very rigid frame stabilising oxyanion, binding. The rigidity of this active site matrix is the result of a large, number of hydrogen bonding interactions involving side chains and the main, chain of residues lining the active site. The structures of single site, mutants to alanine of the catalytic residue His404 and the vanadium, protein ligand His496 have also been analysed. Additionally we determined, the structural effects of mutations to alanine of residue Arg360, directly, involved in the compensation of the negative charge of the vanadate group, and of residue Asp292 involved in forming a salt bridge with Arg490 which, also interacts with the vanadate. The enzymatic chlorinating activity is, drastically reduced to approximately 1% in mutants D292A, H404A and H496A., The structures of the mutants confirm the view of the active site of this, chloroperoxidase as a rigid matrix providing an oxyanion binding site. No, large changes are observed at the active site for any of the analysed, mutants. The empty space left by replacement of large side chains by, alanines is usually occupied by a new solvent molecule which partially, replaces the hydrogen bonding interactions to the vanadate. The new, solvent molecules additionally replace part of the interactions the, mutated side chains were making to other residues lining the active site, frame. When this is not possible, another side chain in the proximity of, the mutated residue moves in order to satisfy the hydrogen bonding, potential of the residues located at the active site frame.
<StructureSection load='1vnh' size='340' side='right'caption='[[1vnh]], [[Resolution|resolution]] 2.11&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1vnh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Curvularia_inaequalis Curvularia inaequalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VNH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VNH FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.11&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=VO4:VANADATE+ION'>VO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vnh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vnh OCA], [https://pdbe.org/1vnh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vnh RCSB], [https://www.ebi.ac.uk/pdbsum/1vnh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vnh ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/PRXC_CURIN PRXC_CURIN]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vn/1vnh_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vnh ConSurf].
<div style="clear:both"></div>


==About this Structure==
==See Also==
1VNH is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Curvularia_inaequalis Curvularia inaequalis] with VO4 as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Chloride_peroxidase Chloride peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.10 1.11.1.10] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1VNH OCA].
*[[Haloperoxidase|Haloperoxidase]]
 
__TOC__
==Reference==
</StructureSection>
X-ray crystal structures of active site mutants of the vanadium-containing chloroperoxidase from the fungus Curvularia inaequalis., Macedo-Ribeiro S, Hemrika W, Renirie R, Wever R, Messerschmidt A, J Biol Inorg Chem. 1999 Apr;4(2):209-19. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10499093 10499093]
[[Category: Chloride peroxidase]]
[[Category: Curvularia inaequalis]]
[[Category: Curvularia inaequalis]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Macedo-Ribeiro, S.]]
[[Category: Macedo-Ribeiro S]]
[[Category: Messerschmidt, A.]]
[[Category: Messerschmidt A]]
[[Category: VO4]]
[[Category: mutant h496a]]
[[Category: oxidoreductase]]
[[Category: vanadium-containing haloperoxidase]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 04:58:11 2007''

Latest revision as of 11:46, 14 February 2024

CHLOROPEROXIDASE FROM THE FUNGUS CURVULARIA INAEQUALIS: MUTANT H496ACHLOROPEROXIDASE FROM THE FUNGUS CURVULARIA INAEQUALIS: MUTANT H496A

Structural highlights

1vnh is a 1 chain structure with sequence from Curvularia inaequalis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.11Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

PRXC_CURIN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1vnh, resolution 2.11Å

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