Citric Acid Cycle: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
 
(36 intermediate revisions by the same user not shown)
Line 6: Line 6:
*[[Krebs cycle overview]]
*[[Krebs cycle overview]]
*[[Krebs cycle reactions]]
*[[Krebs cycle reactions]]
*[[Major metabolic pathways converging on the citric acid cycle]]
*[[Citric acid cycle intermediates serve as substrates for biosynthetic processes]]
The [[Citric Acid Cycle]] (tricarboxylic acid cycle) is a series of enzyme catalyzed reactions which are critical in cellular respiration. Under oxidative conditions, pyruvate continues to be metabolized through the tricarboxylic acid cycle. In this cycle, Acetyl-CoA, a byproduct of [[glycolysis]], along with various cofactors, are broken down into carbon dioxide, water, and energy in the form of GTP and NADH.
The [[Citric Acid Cycle]] (tricarboxylic acid cycle) is a series of enzyme catalyzed reactions which are critical in cellular respiration. Under oxidative conditions, pyruvate continues to be metabolized through the tricarboxylic acid cycle. In this cycle, Acetyl-CoA, a byproduct of [[glycolysis]], along with various cofactors, are broken down into carbon dioxide, water, and energy in the form of GTP and NADH.


[[Pyruvate dehydrogenase]]
'''Pyruvate decarboxylation or pyruvate oxidation''', also known as the link reaction (or oxidative decarboxylation of pyruvate), is the conversion of <scene name='39/392339/Cv1/11'>pyruvate</scene> into <scene name='43/430893/Cv/2'>Acetyl-CoA</scene> by the enzyme complex pyruvate dehydrogenase complex (see [[Pyruvate dehydrogenase]]).


The multienzyme complex together catalyzes five distinct reactions in the conversion of pyruvate to acetyl-CoA. The overall result is described by the following reaction:  
The multienzyme complex together catalyzes five distinct reactions in the conversion of pyruvate to Acetyl-CoA. The overall result is described by the following reaction:  


Pyruvate + CoA + NAD+ ==> Acetyl-CoA + CO2 + NADH
Pyruvate + CoA + NAD+ ==> Acetyl-CoA + CO2 + NADH
Line 22: Line 25:
*Step 0 / 10 = [[Krebs cycle step 1]]
*Step 0 / 10 = [[Krebs cycle step 1]]
*[[ATP-citrate synthase]]
*[[ATP-citrate synthase]]
4C <scene name='43/430893/Cv/3'>oxaloacetate</scene> to a 6C molecule <scene name='43/430893/Cv/4'>citrate</scene>


'''Step 1 - Dehydration - Aconitase'''
'''Step 1 - Dehydration - Aconitase'''
* [[Aconitase]]
* [[Aconitase]]
*1st step of [[Krebs cycle step 2]]
*1st step of [[Krebs cycle step 2]]
6C Citrate => 6C <scene name='43/430893/Cv/5'>cis-Aconitate</scene>


'''Step 2 - Hydration - Aconitase'''
'''Step 2 - Hydration - Aconitase'''
* [[Aconitase]]
* [[Aconitase]]
*2nd step of [[Krebs cycle step 2]]
*2nd step of [[Krebs cycle step 2]]
 
6C ''cis''-Aconitate => 6C <scene name='43/430893/Cv/6'>Isocitrate</scene>
'''Step 3 - Oxidation - Isocitrate dehydrogenase'''
'''Step 3 - Oxidation - Isocitrate dehydrogenase'''
*[[Isocitrate dehydrogenase]]
*[[Isocitrate dehydrogenase]]
*1st step of [[Krebs cycle step 3]]
*1st step of [[Krebs cycle step 3]]
6C Isocitrate => 6C <scene name='43/430893/Cv/7'>Oxalosuccinate</scene>


'''Step 4 - Decarboxylation - Isocitrate dehydrogenase'''
'''Step 4 - Decarboxylation - Isocitrate dehydrogenase'''
*[[Isocitrate dehydrogenase]]
*[[Isocitrate dehydrogenase]]
*2nd step of [[Krebs cycle step 3]]
*2nd step of [[Krebs cycle step 3]]
6C Oxalosuccinate => 5C <scene name='43/430893/Cv/8'>α-Ketoglutarate</scene>
The α-ketoglutarate family of amino acid synthesis (synthesis of glutamate, glutamine, proline and arginine) begins with α-ketoglutarate, an intermediate in the Citric Acid Cycle. See [[Alpha-Ketoglutarates: glutamate, glutamine, proline, arginine]]


'''Step 5 - Oxidative decarboxylation - α-Ketoglutarate dehydrogenase (2-Oxoglutarate Dehydrogenase)'''
'''Step 5 - Oxidative decarboxylation - α-Ketoglutarate dehydrogenase (2-Oxoglutarate Dehydrogenase)'''
*[[2-Oxoglutarate Dehydrogenase]]
*[[2-Oxoglutarate Dehydrogenase]]
*Step 5 = [[Krebs cycle step 4]]
*Step 5 = [[Krebs cycle step 4]]
5C α-Ketoglutarate => <scene name='43/430893/Cv/9'>Succinyl-CoA</scene> 4C chain (CoA excluded)


'''Step 6 - Substrate-level phosphorylation - Succinyl-CoA synthetase'''
'''Step 6 - Substrate-level phosphorylation - Succinyl-CoA synthetase'''
*[[Succinyl-CoA synthetase]]
*[[Succinyl-CoA synthetase]]
*Step 6 = [[Krebs cycle step 5]]
*Step 6 = [[Krebs cycle step 5]]
Succinyl-CoA => <scene name='43/430893/Cv/10'>Succinate</scene>
The succinyl-CoA formed during [[Beta oxidation]] can also enter the Citric Acid Cycle in this step.


'''Step 7 - Oxidation - Succinate dehydrogenase'''
'''Step 7 - Oxidation - Succinate dehydrogenase'''
*[[Succinate Dehydrogenase]]
*[[Succinate Dehydrogenase]]
*Step 7 = [[Krebs cycle step 6]]
*Step 7 = [[Krebs cycle step 6]]
Succinate => <scene name='43/430893/Cv/11'>Fumarate</scene>


'''Step 8 - Hydration - Fumarase'''
'''Step 8 - Hydration - Fumarase'''
*[[Fumarase]]
*[[Fumarase]]
*Step 8 = [[Krebs cycle step 7]]  
*Step 8 = [[Krebs cycle step 7]]  
Fumarate => <scene name='43/430893/Cv/12'>L-Malate</scene>


'''Step 9 - Oxidation - Malate dehydrogenase'''
'''Step 9 - Oxidation - Malate dehydrogenase'''
*[[Malate dehydrogenase]]
*[[Malate dehydrogenase]]
*Step 9 = [[Krebs cycle step 8]]
*Step 9 = [[Krebs cycle step 8]]
L-Malate => <scene name='43/430893/Cv/3'>oxaloacetate</scene>


Articles in Proteopedia concerning [[Citric Acid Cycle]] include:
Oxaloacetate takes part in [[gluconeogenesis]], the urea cycle, the glyoxylate cycle, amino acid synthesis ([[Oxaloacetate/aspartate: lysine, asparagine, methionine, threonine, and isoleucine]]), [[fatty acid synthesis]].
* [[Citrate_Synthase|Citrate Synthase Structure & Mechanism]]
* [[Aconitase]]
* [[Isocitrate dehydrogenase|Isocitrate Dehydrogenase]]
* [[2-Oxoglutarate Dehydrogenase]] (also known as alpha-ketoglutarate dehydrogenase)
* [[Succinyl-CoA synthetase|Succinyl-CoA Synthetase]]
* [[Succinate Dehydrogenase]]
* [[Fumarase]]
* [[Malate dehydrogenase|Malate Dehydrogenase]]
* [[User:Cameron Evans/Sandbox 1|Glutamate Dehydrogenase]]
 
<br/>


To view [[Citric Acid Cycle]] related proteins which are [[Proteopedia:Structure Index|Structure Index]] entries see:
'''Step 10 / 0 - Aldol condensation - Citrate synthase'''
* [[Aconitase#Available_3D_structures_of_Aconitase|Aconitase]]
*[[Citrate Synthase]]
<br />
*Step 10 / 0 = [[Krebs cycle step 1]]
4C <scene name='43/430893/Cv/3'>oxaloacetate</scene> to a 6C molecule <scene name='43/430893/Cv/4'>citrate</scene>


To view automatically seeded indices concerning [[Citric Acid Cycle]] See:
To view automatically seeded indices concerning [[Citric Acid Cycle]] See:
*[[:Category:Citric acid cycle|Citric Acid Cycle]]
*[[:Category:Citric acid cycle|Citric Acid Cycle]]
<br />
<br />
See also:
*[[Biosynthesis of cholesterol]]
*[[Fatty acid synthesis]]
*[[Amino Acid Synthesis]]
</StructureSection>
</StructureSection>

Latest revision as of 18:44, 16 February 2023

A Citric Acid Cycle Schematic

The Citric Acid Cycle is a key metabolic pathway that connects carbohydrate, fat, and protein metabolism!!! See also [1].

The Citric Acid Cycle (tricarboxylic acid cycle) is a series of enzyme catalyzed reactions which are critical in cellular respiration. Under oxidative conditions, pyruvate continues to be metabolized through the tricarboxylic acid cycle. In this cycle, Acetyl-CoA, a byproduct of glycolysis, along with various cofactors, are broken down into carbon dioxide, water, and energy in the form of GTP and NADH.

Pyruvate decarboxylation or pyruvate oxidation, also known as the link reaction (or oxidative decarboxylation of pyruvate), is the conversion of into by the enzyme complex pyruvate dehydrogenase complex (see Pyruvate dehydrogenase).

The multienzyme complex together catalyzes five distinct reactions in the conversion of pyruvate to Acetyl-CoA. The overall result is described by the following reaction:

Pyruvate + CoA + NAD+ ==> Acetyl-CoA + CO2 + NADH

However, pyruvate dehydrogenase (E1) is responsible for only the first two of the five reactions. The first of these is the decarboxylation of pyruvate and coupling of thiamine pyrophosphate (TPP) to form hydroxyethyl-TPP.

Pyruvate + TPP ==> Hydroxyethyl-TPP + CO2

Step 0 / 10 - Aldol condensation - Citrate synthase

4C to a 6C molecule

Step 1 - Dehydration - Aconitase

6C Citrate => 6C

Step 2 - Hydration - Aconitase

6C cis-Aconitate => 6C

Step 3 - Oxidation - Isocitrate dehydrogenase

6C Isocitrate => 6C

Step 4 - Decarboxylation - Isocitrate dehydrogenase

6C Oxalosuccinate => 5C

The α-ketoglutarate family of amino acid synthesis (synthesis of glutamate, glutamine, proline and arginine) begins with α-ketoglutarate, an intermediate in the Citric Acid Cycle. See Alpha-Ketoglutarates: glutamate, glutamine, proline, arginine

Step 5 - Oxidative decarboxylation - α-Ketoglutarate dehydrogenase (2-Oxoglutarate Dehydrogenase)

5C α-Ketoglutarate => 4C chain (CoA excluded)

Step 6 - Substrate-level phosphorylation - Succinyl-CoA synthetase

Succinyl-CoA =>

The succinyl-CoA formed during Beta oxidation can also enter the Citric Acid Cycle in this step.

Step 7 - Oxidation - Succinate dehydrogenase

Succinate =>

Step 8 - Hydration - Fumarase

Fumarate =>

Step 9 - Oxidation - Malate dehydrogenase

L-Malate =>

Oxaloacetate takes part in gluconeogenesis, the urea cycle, the glyoxylate cycle, amino acid synthesis (Oxaloacetate/aspartate: lysine, asparagine, methionine, threonine, and isoleucine), fatty acid synthesis.

Step 10 / 0 - Aldol condensation - Citrate synthase

4C to a 6C molecule

To view automatically seeded indices concerning Citric Acid Cycle See:


See also:


Open conformation of citrate synthase dimer complex with citrate (PDB code 1cts) and closed conformation of citrate synthase dimer complex with citrate and CoA (PDB code 2cts)

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

David Canner, Ann Taylor, Jaime Prilusky, Wayne Decatur, Alexander Berchansky