6bhx: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
Line 3: Line 3:
<StructureSection load='6bhx' size='340' side='right'caption='[[6bhx]], [[Resolution|resolution]] 2.94&Aring;' scene=''>
<StructureSection load='6bhx' size='340' side='right'caption='[[6bhx]], [[Resolution|resolution]] 2.94&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[6bhx]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacsu Bacsu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BHX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6BHX FirstGlance]. <br>
<table><tr><td colspan='2'>[[6bhx]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BHX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6BHX FirstGlance]. <br>
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ssbA, BSU40900 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224308 BACSU])</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.936&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6bhx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6bhx OCA], [http://pdbe.org/6bhx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6bhx RCSB], [http://www.ebi.ac.uk/pdbsum/6bhx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6bhx ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6bhx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6bhx OCA], [https://pdbe.org/6bhx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6bhx RCSB], [https://www.ebi.ac.uk/pdbsum/6bhx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6bhx ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/SSBA_BACSU SSBA_BACSU]] Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism (PubMed:21170359). Has a 20-fold higher affinity for ssDNA than SsbB; SsbA and DprA activate the homologuos DNA strand exchange function of RecA-ATP (PubMed:25138221).<ref>PMID:25138221</ref> <ref>PMID:21170359</ref>
[https://www.uniprot.org/uniprot/SSBA_BACSU SSBA_BACSU] Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism (PubMed:21170359). Has a 20-fold higher affinity for ssDNA than SsbB; SsbA and DprA activate the homologuos DNA strand exchange function of RecA-ATP (PubMed:25138221).<ref>PMID:25138221</ref> <ref>PMID:21170359</ref>  
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Bacteria encode homooligomeric single-stranded (ss) DNA-binding proteins (SSBs) that coat and protect ssDNA intermediates formed during genome maintenance reactions. The prototypical Escherichia coli SSB tetramer can bind ssDNA using multiple modes that differ by the number of bases bound per tetramer and the magnitude of the binding cooperativity. Our understanding of the mechanisms underlying cooperative ssDNA binding by SSBs has been hampered by the limited amount of structural information available for interfaces that link adjacent SSB proteins on ssDNA. Here we present a crystal structure of Bacillus subtilis SsbA bound to ssDNA. The structure resolves SsbA tetramers joined together by a ssDNA "bridge" and identifies an interface, termed the "bridge interface," that links adjacent SSB tetramers through an evolutionarily conserved surface near the ssDNA-binding site. E. coli SSB variants with altered bridge interface residues bind ssDNA with reduced cooperativity and with an altered distribution of DNA binding modes. These variants are also more readily displaced from ssDNA by RecA than wild-type SSB. In spite of these biochemical differences, each variant is able to complement deletion of the ssb gene in E. coli. Together our data suggest a model in which the bridge interface contributes to cooperative ssDNA binding and SSB function but that destabilization of the bridge interface is tolerated in cells.


Structural Mechanisms of Cooperative DNA Binding by Bacterial Single-Stranded DNA-Binding Proteins.,Dubiel K, Myers AR, Kozlov AG, Yang O, Zhang J, Ha T, Lohman TM, Keck JL J Mol Biol. 2018 Nov 22. pii: S0022-2836(18)31046-5. doi:, 10.1016/j.jmb.2018.11.019. PMID:30472092<ref>PMID:30472092</ref>
==See Also==
 
*[[Single-stranded DNA-binding protein 3D structures|Single-stranded DNA-binding protein 3D structures]]
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 6bhx" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bacsu]]
[[Category: Bacillus subtilis subsp. subtilis str. 168]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Dubiel, K D]]
[[Category: Synthetic construct]]
[[Category: Keck, J L]]
[[Category: Dubiel KD]]
[[Category: Myers, A R]]
[[Category: Keck JL]]
[[Category: Satyshur, K A]]
[[Category: Myers AR]]
[[Category: Dna binding protein-dna complex]]
[[Category: Satyshur KA]]
[[Category: Dna repair]]
[[Category: Dna replication]]
[[Category: Single-stranded dna binding protein]]

Latest revision as of 17:22, 13 March 2024

B. subtilis SsbA with DNAB. subtilis SsbA with DNA

Structural highlights

6bhx is a 5 chain structure with sequence from Bacillus subtilis subsp. subtilis str. 168 and Synthetic construct. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.936Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

SSBA_BACSU Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism (PubMed:21170359). Has a 20-fold higher affinity for ssDNA than SsbB; SsbA and DprA activate the homologuos DNA strand exchange function of RecA-ATP (PubMed:25138221).[1] [2]

See Also

References

  1. ↑ Yadav T, Carrasco B, Serrano E, Alonso JC. Roles of Bacillus subtilis DprA and SsbA in RecA-mediated genetic recombination. J Biol Chem. 2014 Oct 3;289(40):27640-52. doi: 10.1074/jbc.M114.577924. Epub 2014, Aug 19. PMID:25138221 doi:http://dx.doi.org/10.1074/jbc.M114.577924
  2. ↑ Costes A, Lecointe F, McGovern S, Quevillon-Cheruel S, Polard P. The C-terminal domain of the bacterial SSB protein acts as a DNA maintenance hub at active chromosome replication forks. PLoS Genet. 2010 Dec 9;6(12):e1001238. doi: 10.1371/journal.pgen.1001238. PMID:21170359 doi:http://dx.doi.org/10.1371/journal.pgen.1001238

6bhx, resolution 2.94Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=6bhx&oldid=4090651"