5ayc: Difference between revisions

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New page: '''Unreleased structure''' The entry 5ayc is ON HOLD Authors: Ye, Y., Saburi, W, Kato, K., Yao, M. Description: Category: Unreleased Structures Category: Saburi, W, Kato, K [[...
 
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'''Unreleased structure'''


The entry 5ayc is ON HOLD
==Crystal structure of Ruminococcus albus 4-O-beta-D-mannosyl-D-glucose phosphorylase (RaMP1) in complexes with sulfate and 4-O-beta-D-mannosyl-D-glucose==
 
<StructureSection load='5ayc' size='340' side='right'caption='[[5ayc]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
Authors: Ye, Y., Saburi, W, Kato, K., Yao, M.
== Structural highlights ==
 
<table><tr><td colspan='2'>[[5ayc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruminococcus_albus_7_=_DSM_20455 Ruminococcus albus 7 = DSM 20455]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AYC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5AYC FirstGlance]. <br>
Description:  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
[[Category: Unreleased Structures]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
[[Category: Saburi, W, Kato, K]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ayc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ayc OCA], [https://pdbe.org/5ayc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ayc RCSB], [https://www.ebi.ac.uk/pdbsum/5ayc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ayc ProSAT]</span></td></tr>
[[Category: Ye, Y]]
</table>
[[Category: Yao, M]]
== Function ==
[https://www.uniprot.org/uniprot/MGP_RUMA7 MGP_RUMA7] Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man-Glc) to mannose 1-phosphate (Man1P) and glucose. Involved in a mannan catabolic pathway which feeds into glycolysis.[HAMAP-Rule:MF_00928]<ref>PMID:23093406</ref>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Ruminococcus albus 7 = DSM 20455]]
[[Category: Kato K]]
[[Category: Saburi W]]
[[Category: Yao M]]
[[Category: Ye Y]]

Latest revision as of 12:06, 20 March 2024

Crystal structure of Ruminococcus albus 4-O-beta-D-mannosyl-D-glucose phosphorylase (RaMP1) in complexes with sulfate and 4-O-beta-D-mannosyl-D-glucoseCrystal structure of Ruminococcus albus 4-O-beta-D-mannosyl-D-glucose phosphorylase (RaMP1) in complexes with sulfate and 4-O-beta-D-mannosyl-D-glucose

Structural highlights

5ayc is a 1 chain structure with sequence from Ruminococcus albus 7 = DSM 20455. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.9Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

MGP_RUMA7 Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man-Glc) to mannose 1-phosphate (Man1P) and glucose. Involved in a mannan catabolic pathway which feeds into glycolysis.[HAMAP-Rule:MF_00928][1]

References

  1. Kawahara R, Saburi W, Odaka R, Taguchi H, Ito S, Mori H, Matsui H. Metabolic mechanism of mannan in a ruminal bacterium, Ruminococcus albus, involving two mannoside phosphorylases and cellobiose 2-epimerase: discovery of a new carbohydrate phosphorylase, beta-1,4-mannooligosaccharide phosphorylase. J Biol Chem. 2012 Dec 7;287(50):42389-99. doi: 10.1074/jbc.M112.390336. Epub 2012, Oct 23. PMID:23093406 doi:http://dx.doi.org/10.1074/jbc.M112.390336

5ayc, resolution 1.90Å

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