2rae: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
==Crystal structure of a TetR/AcrR family transcriptional regulator from Rhodococcus sp. RHA1==
==Crystal structure of a TetR/AcrR family transcriptional regulator from Rhodococcus sp. RHA1==
<StructureSection load='2rae' size='340' side='right' caption='[[2rae]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
<StructureSection load='2rae' size='340' side='right'caption='[[2rae]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2rae]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodococcus_sp. Rhodococcus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RAE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2RAE FirstGlance]. <br>
<table><tr><td colspan='2'>[[2rae]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_jostii_RHA1 Rhodococcus jostii RHA1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RAE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RAE FirstGlance]. <br>
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RHA08332, RHA1_ro06070 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1831 Rhodococcus sp.])</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rae FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rae OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2rae RCSB], [http://www.ebi.ac.uk/pdbsum/2rae PDBsum], [http://www.topsan.org/Proteins/MCSG/2rae TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rae FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rae OCA], [https://pdbe.org/2rae PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rae RCSB], [https://www.ebi.ac.uk/pdbsum/2rae PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rae ProSAT], [https://www.topsan.org/Proteins/MCSG/2rae TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q0S3N9_RHOJR Q0S3N9_RHOJR]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ra/2rae_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ra/2rae_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rae ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
==See Also==
*[[Transcriptional activator 3D structures|Transcriptional activator 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Rhodococcus sp]]
[[Category: Large Structures]]
[[Category: Edwards, A M]]
[[Category: Rhodococcus jostii RHA1]]
[[Category: Joachimiak, A]]
[[Category: Edwards AM]]
[[Category: Kagan, O]]
[[Category: Joachimiak A]]
[[Category: Structural genomic]]
[[Category: Kagan O]]
[[Category: Savchenko, A]]
[[Category: Savchenko A]]
[[Category: Skarina, T]]
[[Category: Skarina T]]
[[Category: Zhang, R]]
[[Category: Zhang R]]
[[Category: Dna-binding]]
[[Category: Mcsg]]
[[Category: PSI, Protein structure initiative]]
[[Category: Rha08332]]
[[Category: Tetr/acrr family transcriptional regulator]]
[[Category: Transcription]]
[[Category: Transcription regulation]]

Latest revision as of 12:21, 21 February 2024

Crystal structure of a TetR/AcrR family transcriptional regulator from Rhodococcus sp. RHA1Crystal structure of a TetR/AcrR family transcriptional regulator from Rhodococcus sp. RHA1

Structural highlights

2rae is a 1 chain structure with sequence from Rhodococcus jostii RHA1. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.2Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q0S3N9_RHOJR

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2rae, resolution 2.20Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA