Dethiobiotin synthetase: Difference between revisions

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<StructureSection load='1a82' size='450' side='right' caption='Dethiobiotin synthetase complex with dethiobiotin, ATP and Mg+2 ion (green) (PDB entry [[1a82]])' scene='49/493028/Cv/1'>
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'''Dethiobiotin synthetase''' (DTBS) catalyzes the first ring closure in the biotin synthesis.  The reaction transforms 7,8-diaminononanoate (DAN), ATP and CO2 to dethiobiotin, ADP and phosphate.


==3D dethiobiotin synthetase==
'''Dethiobiotin synthetase''' (DTBS) or '''ATP-depenent dethiobiotin synthetase''' catalyzes the first ring closure in the biotin synthesis.  The reaction transforms 7,8-diaminononanoate (DAN), ATP and CO2 to dethiobiotin (DTB), ADP and phosphate.<ref>PMID:4921568</ref>


[[1dbs]], [[1dts]], 1byi]] – EcDTBS – ''Escherichia coli''<br />
== Structural highlights ==
[[2qmo]] – HpDTBS – ''Helicobacter pylori''<br />
[[3fgn]] – MtDTBS – ''Mycobacterium tuberculosis''<br />
[[3of5]] – DTBS – ''Francicella tularensis''


'''DTBS binary complex'''
The <scene name='49/493028/Cv/5'>active site contains the substrate (DAN), Mg+2 ion and ATP</scene>.<ref>PMID:9576910</ref>


[[3fmf]] – MtDTBS + DAN<br />
==3D dethiobiotin synthetase==
[[1dad]] – EcDTBS + ADP<BR />
[[Dethiobiotin synthetase 3D structures]]
[[1dae]] - EcDTBS + nonanedioate derivative<br />
[[3fm]]i – MtDTBS + aminopelargonic acid<br />
[[1dai]] - EcDTBS + DAN
 
'''DTBS ternary complex'''
 
[[3qxc]] - HpDTBS + Mg + ATP<BR />
[[1daf]] - EcDTBS + DAN + ADP<BR />
[[1dag]] - EcDTBS + DAN + ATP derivative<br />
[[3qxj]] - HpDTBS + Mg + ATP<BR />
[[3qxs]] - HpDTBS + Mg + phosphoaminophosphonic acid
 
'''DTBS quaternary complex'''
 
[[1dah]] - EcDTBS + DAN + Mn + ATP<BR / derivative<br />
[[1bs1]] - EcDTBS + DAN + Mg + ADP<BR />
[[1a82]] - EcDTBS + DAN + Mg + ATP<BR />
[[3fpa]] - MtDTBS + DAN + Mg + phosphate <br />
[[3mle]] - HpDTBS + Mg + phosphate + ADP<BR />
[[3qy0]] - HpDTBS + Mg + phosphate + GDP<BR />


'''DTBS higher complexes'''
</StructureSection>


[[1dam]] - EcDTBS + DAN + Mg + phosphate + ADP<BR />
== References ==
[[1dak]] - EcDTBS + DAN + mixed anhydride + Mg + phosphate + ADP<BR />
<references/>
[[3qxh]] - HpDTBS + aminooctanoic acid + Mg + phosphate + ADP<BR />
[[Category:Topic Page]]
[[3qxx]] - HpDTBS + aminooctanoic acid + Mg + phosphate + GTP<BR />

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Michal Harel, Alexander Berchansky