2pwe: Difference between revisions

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New page: left|200px<br /><applet load="2pwe" size="350" color="white" frame="true" align="right" spinBox="true" caption="2pwe, resolution 2.0Å" /> '''Crystal structure of ...
 
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[[Image:2pwe.gif|left|200px]]<br /><applet load="2pwe" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2pwe, resolution 2.0&Aring;" />
'''Crystal structure of the MutB E254Q mutant in complex with the substrate sucrose'''<br />


==Overview==
==Crystal structure of the MutB E254Q mutant in complex with the substrate sucrose==
Various diseases related to the over- consumption of sugar make a growing, need for sugar substitutes. Since sucrose is an inexpensive and readily, available D-glucose donor, the industrial potential for enzymatic, synthesis of the sucrose isomers trehalulose and/or isomaltulose from, sucrose is large. The product specificity of sucrose isomerases which, catalyze this reaction depends essentially on the possibility for, tautomerization of sucrose which is required for trehalulose formation., For optimal use of the enzyme, targeting controlled synthesis of these, functional isomers, it is necessary to minimize the side reactions. This, requires an extensive analysis of substrate binding modes and of the, specificity- determining sites in the structure. The 1.6 to 2.2 A, resolution three-dimensional structures of native and mutant complexes of, a trehalulose synthase from Pseudomonas mesoacidophila MX-45 mimic, successive states of the enzyme reaction. Combined with mutagenesis, studies they give for the first time thorough insights into substrate, recognition and processing, and reaction specificities of these enzymes., Amongst the important outcomes of this study is the revelation of an, aromatic clamp defined by Phe256 and Phe280 playing an essential role in, substrate recognition and in controlling the reaction specificity, which, is further supported by mutagenesis studies. Furthermore, this study, highlights essential residues for binding the glucosyl- and, fructosyl-moieties. The introduction of subtle changes informed by, comparative 3D structural data observed within our study can lead to, fundamental modifications in the mode of action of sucrose isomerases, and, hence provide a templatefor industrial catalysts.
<StructureSection load='2pwe' size='340' side='right'caption='[[2pwe]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[2pwe]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_ubonensis_subsp._mesacidophila Burkholderia ubonensis subsp. mesacidophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PWE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PWE FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900003:sucrose'>PRD_900003</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pwe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pwe OCA], [https://pdbe.org/2pwe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pwe RCSB], [https://www.ebi.ac.uk/pdbsum/2pwe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pwe ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q2PS28_9BURK Q2PS28_9BURK]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pw/2pwe_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pwe ConSurf].
<div style="clear:both"></div>


==About this Structure==
==See Also==
2PWE is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_mesoacidophila Pseudomonas mesoacidophila] with <scene name='pdbligand=SUC:'>SUC</scene> and <scene name='pdbligand=CA:'>CA</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Isomaltulose_synthase Isomaltulose synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.99.11 5.4.99.11] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PWE OCA].
*[[Trehalulose synthase|Trehalulose synthase]]
 
__TOC__
==Reference==
</StructureSection>
Trehalulose synthase native and carbohydrate complexed structures provide insights into sucrose isomerization., Ravaud S, Robert X, Watzlawick H, Haser R, Mattes R, Aghajari N, J Biol Chem. 2007 Jun 27;. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17597061 17597061]
[[Category: Burkholderia ubonensis subsp. mesacidophila]]
[[Category: Isomaltulose synthase]]
[[Category: Large Structures]]
[[Category: Pseudomonas mesoacidophila]]
[[Category: Aghajari N]]
[[Category: Single protein]]
[[Category: Haser R]]
[[Category: Aghajari, N.]]
[[Category: Ravaud S]]
[[Category: Haser, R.]]
[[Category: Robert X]]
[[Category: Ravaud, S.]]
[[Category: Robert, X.]]
[[Category: CA]]
[[Category: SUC]]
[[Category: (beta/alpha)8]]
[[Category: alpha-amylase family]]
[[Category: barrel]]
[[Category: enzyme-substrate complex]]
[[Category: sucrose isomerase]]
[[Category: trehalulose synthase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 12:41:19 2008''

Latest revision as of 12:12, 21 February 2024

Crystal structure of the MutB E254Q mutant in complex with the substrate sucroseCrystal structure of the MutB E254Q mutant in complex with the substrate sucrose

Structural highlights

2pwe is a 2 chain structure with sequence from Burkholderia ubonensis subsp. mesacidophila. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2Å
Ligands:, , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q2PS28_9BURK

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2pwe, resolution 2.00Å

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OCA
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