7lk4: Difference between revisions
m Protected "7lk4" [edit=sysop:move=sysop] |
No edit summary |
||
| (5 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
The | ==Crystal structure of BAK L100A in complex with activating antibody fragments== | ||
<StructureSection load='7lk4' size='340' side='right'caption='[[7lk4]], [[Resolution|resolution]] 3.10Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[7lk4]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7LK4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7LK4 FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7lk4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7lk4 OCA], [https://pdbe.org/7lk4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7lk4 RCSB], [https://www.ebi.ac.uk/pdbsum/7lk4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7lk4 ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/BAK_HUMAN BAK_HUMAN] In the presence of an appropriate stimulus, accelerates programmed cell death by binding to, and antagonizing the anti-apoptotic action of BCL2 or its adenovirus homolog E1B 19k protein. Low micromolar levels of zinc ions inhibit the promotion of apoptosis.<ref>PMID:8521816</ref> <ref>PMID:17157251</ref> | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
Pro-apoptotic BAK and BAX are activated by BH3-only proteins to permeabilise the outer mitochondrial membrane. The antibody 7D10 also activates BAK on mitochondria and its epitope has previously been mapped to BAK residues in the loop connecting helices alpha1 and alpha2 of BAK. A crystal structure of the complex between the Fv fragment of 7D10 and the BAK mutant L100A suggests a possible mechanism of activation involving the alpha1-alpha2 loop residue M60. M60 mutants of BAK have reduced stability and elevated sensitivity to activation by BID, illustrating that M60, through its contacts with residues in helices alpha1, alpha5 and alpha6, is a linchpin stabilising the inert, monomeric structure of BAK. Our data demonstrate that BAK's alpha1-alpha2 loop is not a passive covalent connector between secondary structure elements, but a direct restraint on BAK's activation. | |||
Structure of the BAK-activating antibody 7D10 bound to BAK reveals an unexpected role for the alpha1-alpha2 loop in BAK activation.,Robin AY, Miller MS, Iyer S, Shi MX, Wardak AZ, Lio D, Smith NA, Smith BJ, Birkinshaw RW, Czabotar PE, Kluck RM, Colman PM Cell Death Differ. 2022 Sep;29(9):1757-1768. doi: 10.1038/s41418-022-00961-w. , Epub 2022 Mar 12. PMID:35279694<ref>PMID:35279694</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
[[Category: | </div> | ||
[[Category: Colman | <div class="pdbe-citations 7lk4" style="background-color:#fffaf0;"></div> | ||
[[Category: Robin | |||
==See Also== | |||
*[[Antibody 3D structures|Antibody 3D structures]] | |||
*[[B-cell lymphoma proteins 3D structures|B-cell lymphoma proteins 3D structures]] | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Homo sapiens]] | |||
[[Category: Large Structures]] | |||
[[Category: Rattus norvegicus]] | |||
[[Category: Colman PM]] | |||
[[Category: Robin YA]] | |||
Latest revision as of 16:41, 6 November 2024
Crystal structure of BAK L100A in complex with activating antibody fragmentsCrystal structure of BAK L100A in complex with activating antibody fragments
Structural highlights
FunctionBAK_HUMAN In the presence of an appropriate stimulus, accelerates programmed cell death by binding to, and antagonizing the anti-apoptotic action of BCL2 or its adenovirus homolog E1B 19k protein. Low micromolar levels of zinc ions inhibit the promotion of apoptosis.[1] [2] Publication Abstract from PubMedPro-apoptotic BAK and BAX are activated by BH3-only proteins to permeabilise the outer mitochondrial membrane. The antibody 7D10 also activates BAK on mitochondria and its epitope has previously been mapped to BAK residues in the loop connecting helices alpha1 and alpha2 of BAK. A crystal structure of the complex between the Fv fragment of 7D10 and the BAK mutant L100A suggests a possible mechanism of activation involving the alpha1-alpha2 loop residue M60. M60 mutants of BAK have reduced stability and elevated sensitivity to activation by BID, illustrating that M60, through its contacts with residues in helices alpha1, alpha5 and alpha6, is a linchpin stabilising the inert, monomeric structure of BAK. Our data demonstrate that BAK's alpha1-alpha2 loop is not a passive covalent connector between secondary structure elements, but a direct restraint on BAK's activation. Structure of the BAK-activating antibody 7D10 bound to BAK reveals an unexpected role for the alpha1-alpha2 loop in BAK activation.,Robin AY, Miller MS, Iyer S, Shi MX, Wardak AZ, Lio D, Smith NA, Smith BJ, Birkinshaw RW, Czabotar PE, Kluck RM, Colman PM Cell Death Differ. 2022 Sep;29(9):1757-1768. doi: 10.1038/s41418-022-00961-w. , Epub 2022 Mar 12. PMID:35279694[3] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
|
| ||||||||||||||||||