Bacteriorhodopsin 3D structures: Difference between revisions
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Michal Harel (talk | contribs) New page: == 3D Structures of bacteriorhodopsin == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Bacteriorhodopsin **[[1b... |
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*Bacteriorhodopsin | *Bacteriorhodopsin | ||
**[[7bmh]] - Br - fungus<br /> | |||
**[[1bct]] - HsBr residues 163-231 – ''Halobacterium salinarum'' - NMR<br /> | **[[1bct]] - HsBr residues 163-231 – ''Halobacterium salinarum'' - NMR<br /> | ||
**[[1bha]], [[1bhb]] - HsBr residues 1-71 - NMR<br /> | **[[1bha]], [[1bhb]] - HsBr residues 1-71 - NMR<br /> | ||
**[[7vso]], [[7xjc]], [[7xjd]], [[7xje]], [[7z09]], [[7z0a]], [[7z0c]], [[7z0d]], [[7z0e]] - HsBr residues 14-261<br /> | |||
**[[7q35]], [[7q38]] - HsBr residues 14-261(mutant)<br /> | |||
**[[1l0m]]– Br (mutant) – ''Halobacterium halobium'' – NMR<br /> | **[[1l0m]]– Br (mutant) – ''Halobacterium halobium'' – NMR<br /> | ||
**[[4pxk]] - Br (mutant) – ''Haloarcula marismortui''<br /> | **[[4pxk]] - Br (mutant) – ''Haloarcula marismortui''<br /> | ||
**[[4qi1]], [[4qid]], [[5itc]], [[5ite]], [[5kkh]] – HwBr-I – ''Haloquadratum walsbyi''<br /> | **[[4qi1]], [[4qid]], [[5itc]], [[5ite]], [[5kkh]], [[8w7r]], [[8wew]] – HwBr-I – ''Haloquadratum walsbyi''<br /> | ||
**[[4wav]] – HwBr-I (mutant)<br /> | **[[4wav]] – HwBr-I (mutant)<br /> | ||
**[[5azd]] – Br – ''Thermus thermophilus''<br /> | **[[5azd]] – Br – ''Thermus thermophilus''<br /> | ||
**[[8anq]] – Br – ''Sphingomonas paucimobilis''<br /> | |||
*Bacteriorhodopsin complexes | *Bacteriorhodopsin complexes | ||
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**[[3han]], [[2hao]], [[3hap]], [[3haq]], [[3har]], [[3has]], [[3coc]], [[3cod]], [[1tn5]], [[1tn0]], [[1s51]], [[1s52]], [[1s53]], [[1s54]], [[1q5i]], [[1q5j]], [[1pxr]], [[1pxs]], [[3hao]], [[3utv]], [[3utw]], [[3utx]], [[3uty]] - HsBr (mutant) + retinal<br /> | **[[3han]], [[2hao]], [[3hap]], [[3haq]], [[3har]], [[3has]], [[3coc]], [[3cod]], [[1tn5]], [[1tn0]], [[1s51]], [[1s52]], [[1s53]], [[1s54]], [[1q5i]], [[1q5j]], [[1pxr]], [[1pxs]], [[3hao]], [[3utv]], [[3utw]], [[3utx]], [[3uty]] - HsBr (mutant) + retinal<br /> | ||
**[[4md1]], [[4md2]], [[4ov0]], [[5vn7]], [[5vn9]] - HsBr + lipid<br /> | **[[4md1]], [[4md2]], [[4ov0]], [[5vn7]], [[5vn9]] - HsBr + lipid<br /> | ||
**[[3ns0]], [[3nsb]], [[3mbv]], [[1x0s]], [[1x0i]], [[1x0k]], [[1xji]], [[1iw6]], [[4fpd]], [[2i1x]], [[1kme]], [[1qm8]], [[1bm1]], [[1brr]], [[2brd]], [[4hyx]], [[4xxj]], [[4y9h]], [[5a44]], [[5a45]], [[5b34]], [[5b35]], [[5b6v]], [[5b6w]], [[5b6x]], [[5b6y]], [[5b6z]], [[5h2h]], [[5h2i]], [[5h2j]], [[5h2k]], [[5h2l]], [[5h2m]], [[5h2n]], [[5h2o]], [[5h2p]], [[5j7a]], [[6g7h]], [[6g7i]], [[6g7j]], [[6g7k]], [[6g7l]], [[4x31]], [[4x32]], [[1c3w]], [[5zil]], [[5zim]], [[5zin]] – HsBr + lipid + retinal<br /> | **[[3ns0]], [[3nsb]], [[3mbv]], [[1x0s]], [[1x0i]], [[1x0k]], [[1xji]], [[1iw6]], [[4fpd]], [[2i1x]], [[1kme]], [[1qm8]], [[1bm1]], [[1brr]], [[2brd]], [[4hyx]], [[4xxj]], [[4y9h]], [[5a44]], [[5a45]], [[5b34]], [[5b35]], [[5b6v]], [[5b6w]], [[5b6x]], [[5b6y]], [[5b6z]], [[5h2h]], [[5h2i]], [[5h2j]], [[5h2k]], [[5h2l]], [[5h2m]], [[5h2n]], [[5h2o]], [[5h2p]], [[5j7a]], [[6g7h]], [[6g7i]], [[6g7j]], [[6g7k]], [[6g7l]], [[4x31]], [[4x32]], [[1c3w]], [[5zil]], [[5zim]], [[5zin]], [[6ga1]], [[6ga2]], [[6ga3]], [[6ga4]], [[6ga5]], [[6ga6]], [[6ga7]], [[6ga8]], [[6ga9]], [[6gaa]], [[6gab]], [[6gac]], [[6gad]], [[6gae]], [[6gaf]], [[6gag]], [[6gah]], [[6gai]], [[6rmk]], [[6rnj]], [[6rph]], [[6rqo]], [[6rqp]] – HsBr + lipid + retinal<br /> | ||
**[[2at9]] - HsBr + lipid + retinal – Cryo EM<br /> | **[[2at9]] - HsBr + lipid + retinal – Cryo EM<br /> | ||
**[[1s8j]]- HsBr (mutant) + lipid + NO3 + retinal<br /> | **[[1s8j]]- HsBr (mutant) + lipid + NO3 + retinal<br /> | ||
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**[[1jv6]], [[1jv7]], [[3vi0]] - HsBr-O (mutant) + lipid + retinal<br /> | **[[1jv6]], [[1jv7]], [[3vi0]] - HsBr-O (mutant) + lipid + retinal<br /> | ||
**[[1qko]], [[1qkp]] - HsBr + retinal<br /> | **[[1qko]], [[1qkp]] - HsBr + retinal<br /> | ||
**[[5jsi]] – Br + lipid – ''Candidatus actinomarina''<br /> | **[[5jsi]], [[7avn]], [[7avo]], [[7avp]], [[7q37]] – Br + lipid – ''Candidatus actinomarina''<br /> | ||
**[[5uk6]] – Br + lipid – Nostoc - NMR<br /> | **[[5uk6]] – Br + lipid – Nostoc - NMR<br /> | ||
*Halorhodopsin | *Halorhodopsin | ||
**[[3abw | **[[3abw]], [[3vvk]] – NpBr+ N3 + bacterioruberin + detergent + retinal – ''Natronomonas pharaonis''<br /> | ||
**[[3a7k]] – NpBr + bacterioruberin + detergent + retinal + Cl<br /> | |||
**[[3qbg]], [[3qbi]], [[3qbk]], [[3qbl]], [[5etz]] - NpBr + bacterioruberin + detergent + retinal<br /> | **[[3qbg]], [[3qbi]], [[3qbk]], [[3qbl]], [[5etz]] - NpBr + bacterioruberin + detergent + retinal<br /> | ||
**[[5b0w]] - NpBr + bacterioruberin + detergent + retinal + Ile<br /> | **[[5b0w]] - NpBr + bacterioruberin + detergent + retinal + Ile<br /> | ||
**[[4qry]] - NpBr + Br + detergent + retinal<br /> | **[[4qry]] - NpBr + Br + detergent + retinal<br /> | ||
**[[5ahy]], [[5ahz]], [[5g36]] - HsBr + detergent + retinal<br /> | **[[5ahy]], [[5ahz]], [[5g36]] - HsBr + detergent + retinal + Cl<br /> | ||
**[[2jaf]], [[2jag]], [[1e12]] - HsBr (mutant) + lipid+ retinal<br /> | **[[2jaf]], [[2jag]], [[1e12]] - HsBr (mutant) + lipid+ retinal + Cl<br /> | ||
*Sensory rhodopsin II | *Sensory rhodopsin II | ||
**[[2ksy]] – NpBr – NMR<BR /> | **[[1jgj]] - NpBr + retinal<br /> | ||
**[[2ksy]] – NpBr + retinal – NMR<BR /> | |||
**[[2f93]], [[2f95]], [[1h2s]] - BpBr + Br transducer + detergent + retinal<br /> | **[[2f93]], [[2f95]], [[1h2s]] - BpBr + Br transducer + detergent + retinal<br /> | ||
**[[3qap]], [[3qdc]] - NpBr + eicosane + lipid + retinal<br /> | **[[3qap]], [[3qdc]] - NpBr + eicosane + lipid + retinal<br /> | ||
**[[4gyc]], [[5jje]], [[5jjf]], [[5jjj]], [[5jjn]] - NpBr + retinal + eicosane + lipid + Br transducer<br /> | **[[4gyc]], [[5jje]], [[5jjf]], [[5jjj]], [[5jjn]] - NpBr + retinal + eicosane + lipid + Br transducer<br /> | ||
**[[1gu8]], [[1gue]], [[1h68 | **[[1gu8]], [[1gue]], [[1h68]] - NpBr + retinal + Cl<br /> | ||
**[[1xio]] - AnBr + detergent + retinal - ''Anabaena''<br /> | **[[1xio]] - AnBr + detergent + retinal - ''Anabaena''<br /> | ||
**[[4tl3]] - AnBr (mutant) + detergent + retinal<br /> | **[[4tl3]] - AnBr (mutant) + detergent + retinal<br /> | ||
**[[2m3g]] - AnBr + | **[[2m3g]] - AnBr + retinal - NMR<br /> | ||
*Xanthorhodopsin | *Xanthorhodopsin | ||
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**[[1vgo]] - HaBr + detergent + retinal<br /> | **[[1vgo]] - HaBr + detergent + retinal<br /> | ||
**[[1uaz]] - HaBr + retinal<br /> | **[[1uaz]] - HaBr + retinal<br /> | ||
**[[6gux]], [[6guy]], [[6guz]], [[6s63]] - Br + retinal- ''Halorubrum sodomense''<br /> | |||
*Blue-light absorbing proteorhodopsin | *Blue-light absorbing proteorhodopsin | ||
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**[[2l6x]] - GpPRn + detergents + retinal – ''Gamma proteobacterium''<br /> | **[[2l6x]] - GpPRn + detergents + retinal – ''Gamma proteobacterium''<br /> | ||
**[[7b03]] - GpPRn + retinal – Cryo EM<br /> | |||
**[[5abb]] – PRn residues 19-83 + protein translocase – Escherichia coli<br /> | **[[5abb]] – PRn residues 19-83 + protein translocase – Escherichia coli<br /> | ||
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**[[6eyu]] - Rn + eicosane + lipid + retinal – ''Nanosalina''<br /> | **[[6eyu]] - Rn + eicosane + lipid + retinal – ''Nanosalina''<br /> | ||
*Bacteriorhodopsin-like | |||
**[[7w74]] - BrL + lipid + retinal – ''Pseudomonas putida''<br /> | |||
**[[8qlf]], [[8qqz]], [[8qr0]] - EbBrL + lipid – ''Erythrobacter'' – Cryo EM<br /> | |||
**[[8qle]] - EbBrL + lipid <br /> | |||
}} | }} | ||
[[Category:Topic Page]] | |||
Latest revision as of 11:31, 25 November 2024
3D Structures of bacteriorhodopsin3D Structures of bacteriorhodopsin
Updated on 25-November-2024