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==Structure of the ligand binding domain of E. coli CynR, a transcriptional regulator controlling cyanate metabolism== | ==Structure of the ligand binding domain of E. coli CynR, a transcriptional regulator controlling cyanate metabolism== | ||
<StructureSection load='2hxr' size='340' side='right' caption='[[2hxr]], [[Resolution|resolution]] 2.05Å' scene=''> | <StructureSection load='2hxr' size='340' side='right'caption='[[2hxr]], [[Resolution|resolution]] 2.05Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2hxr]] is a 2 chain structure with sequence from [ | <table><tr><td colspan='2'>[[2hxr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HXR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HXR FirstGlance]. <br> | ||
</td></tr><tr><td class="sblockLbl"><b>[[ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |||
<tr><td class="sblockLbl"><b>[[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hxr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hxr OCA], [https://pdbe.org/2hxr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hxr RCSB], [https://www.ebi.ac.uk/pdbsum/2hxr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hxr ProSAT], [https://www.topsan.org/Proteins/MCSG/2hxr TOPSAN]</span></td></tr> | ||
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | </table> | ||
<table> | == Function == | ||
[https://www.uniprot.org/uniprot/CYNR_ECOLI CYNR_ECOLI] Positively regulates the cynTSX operon, and negatively regulates its own transcription. Binds specifically to the cynR-cynTSX intergenic region. | |||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hx/2hxr_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hx/2hxr_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hxr ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
*[[Transcriptional activator|Transcriptional activator]] | *[[Transcriptional activator 3D structures|Transcriptional activator 3D structures]] | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Escherichia coli | [[Category: Escherichia coli K-12]] | ||
[[Category: Cuff | [[Category: Large Structures]] | ||
[[Category: Edwards | [[Category: Cuff ME]] | ||
[[Category: Evdokimova | [[Category: Edwards AM]] | ||
[[Category: Joachimiak | [[Category: Evdokimova E]] | ||
[[Category: Kagan | [[Category: Joachimiak A]] | ||
[[Category: Kagan O]] | |||
[[Category: Savchenko | [[Category: Savchenko A]] | ||
[[Category: Singer | [[Category: Singer AU]] | ||
Latest revision as of 11:10, 30 October 2024
Structure of the ligand binding domain of E. coli CynR, a transcriptional regulator controlling cyanate metabolismStructure of the ligand binding domain of E. coli CynR, a transcriptional regulator controlling cyanate metabolism
Structural highlights
FunctionCYNR_ECOLI Positively regulates the cynTSX operon, and negatively regulates its own transcription. Binds specifically to the cynR-cynTSX intergenic region. Evolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. See Also |
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