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New page: left|200px<br /><applet load="1xx3" size="450" color="white" frame="true" align="right" spinBox="true" caption="1xx3" /> '''Solution Structure of Escherichia coli TonB-...
 
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[[Image:1xx3.gif|left|200px]]<br /><applet load="1xx3" size="450" color="white" frame="true" align="right" spinBox="true"
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'''Solution Structure of Escherichia coli TonB-CTD'''<br />


==Overview==
==Solution Structure of Escherichia coli TonB-CTD==
The TonB protein transduces energy from the proton gradient across the, cytoplasmic membrane of Gram-negative bacteria to TonB-dependent outer, membrane receptors. It is a critically important protein in iron uptake, and deletion of this protein is known to decrease virulence of bacteria in, animal models. This system has been used for Trojan horse antibiotic, delivery. Here, we describe the high-resolution solution structure of, Escherichia coli TonB residues 103-239 (TonB-CTD). TonB-CTD is monomeric, with an unstructured N terminus (103-151) and a well structured C terminus, (152-239). The structure contains a four-stranded antiparallel beta-sheet, packed against two alpha-helices and an extended strand in a configuration, homologous to the C-terminal domain of the TolA protein. Chemical shift, perturbations to the TonB-CTD (1)H-(15)N HSCQ spectrum titrated with TonB, box peptides modeled from the E.coli FhuA, FepA and BtuB proteins were all, equivalent, indicating that all three peptides bind to the same region of, TonB. Isothermal titration calorimetry measurements demonstrate that, TonB-CTD interacts with the FhuA-derived peptide with a K(D)=36(+/-7), microM. On the basis of chemical shift data, the position of Gln160, and, comparison to the TolA gp3 N1 complex crystal structure, we propose that, the TonB box binds to TonB-CTD along the beta3-strand.
<StructureSection load='1xx3' size='340' side='right'caption='[[1xx3]]' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1xx3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XX3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XX3 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xx3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xx3 OCA], [https://pdbe.org/1xx3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xx3 RCSB], [https://www.ebi.ac.uk/pdbsum/1xx3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xx3 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/TONB_ECOLI TONB_ECOLI] Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates such as cobalamin, and various iron compounds (such as iron dicitrate, enterochelin, aerobactin, etc.). In the absence of TonB these receptors bind their substrates but do not carry out active transport. TonB also interacts with some colicins and is involved in the energy-dependent, irreversible steps of bacteriophages phi 80 and T1 infection. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xx/1xx3_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xx3 ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The TonB protein transduces energy from the proton gradient across the cytoplasmic membrane of Gram-negative bacteria to TonB-dependent outer membrane receptors. It is a critically important protein in iron uptake, and deletion of this protein is known to decrease virulence of bacteria in animal models. This system has been used for Trojan horse antibiotic delivery. Here, we describe the high-resolution solution structure of Escherichia coli TonB residues 103-239 (TonB-CTD). TonB-CTD is monomeric with an unstructured N terminus (103-151) and a well structured C terminus (152-239). The structure contains a four-stranded antiparallel beta-sheet packed against two alpha-helices and an extended strand in a configuration homologous to the C-terminal domain of the TolA protein. Chemical shift perturbations to the TonB-CTD (1)H-(15)N HSCQ spectrum titrated with TonB box peptides modeled from the E.coli FhuA, FepA and BtuB proteins were all equivalent, indicating that all three peptides bind to the same region of TonB. Isothermal titration calorimetry measurements demonstrate that TonB-CTD interacts with the FhuA-derived peptide with a K(D)=36(+/-7) microM. On the basis of chemical shift data, the position of Gln160, and comparison to the TolA gp3 N1 complex crystal structure, we propose that the TonB box binds to TonB-CTD along the beta3-strand.


==About this Structure==
The solution structure of the C-terminal domain of TonB and interaction studies with TonB box peptides.,Sean Peacock R, Weljie AM, Peter Howard S, Price FD, Vogel HJ J Mol Biol. 2005 Feb 4;345(5):1185-97. Epub 2004 Dec 15. PMID:15644214<ref>PMID:15644214</ref>
1XX3 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1XX3 OCA].


==Reference==
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
The solution structure of the C-terminal domain of TonB and interaction studies with TonB box peptides., Sean Peacock R, Weljie AM, Peter Howard S, Price FD, Vogel HJ, J Mol Biol. 2005 Feb 4;345(5):1185-97. Epub 2004 Dec 15. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15644214 15644214]
</div>
<div class="pdbe-citations 1xx3" style="background-color:#fffaf0;"></div>
 
==See Also==
*[[TonB|TonB]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Howard, S.P.]]
[[Category: Howard SP]]
[[Category: Peacock, R.S.]]
[[Category: Peacock RS]]
[[Category: Price, F.D.]]
[[Category: Price FD]]
[[Category: Vogel, H.J.]]
[[Category: Vogel HJ]]
[[Category: Weljie, A.M.]]
[[Category: Weljie AM]]
[[Category: c-terminal domain]]
[[Category: nmr]]
[[Category: tonb-ctd]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 06:24:05 2007''

Latest revision as of 10:58, 15 May 2024

Solution Structure of Escherichia coli TonB-CTDSolution Structure of Escherichia coli TonB-CTD

Structural highlights

1xx3 is a 1 chain structure with sequence from Escherichia coli. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Solution NMR
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

TONB_ECOLI Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates such as cobalamin, and various iron compounds (such as iron dicitrate, enterochelin, aerobactin, etc.). In the absence of TonB these receptors bind their substrates but do not carry out active transport. TonB also interacts with some colicins and is involved in the energy-dependent, irreversible steps of bacteriophages phi 80 and T1 infection. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

The TonB protein transduces energy from the proton gradient across the cytoplasmic membrane of Gram-negative bacteria to TonB-dependent outer membrane receptors. It is a critically important protein in iron uptake, and deletion of this protein is known to decrease virulence of bacteria in animal models. This system has been used for Trojan horse antibiotic delivery. Here, we describe the high-resolution solution structure of Escherichia coli TonB residues 103-239 (TonB-CTD). TonB-CTD is monomeric with an unstructured N terminus (103-151) and a well structured C terminus (152-239). The structure contains a four-stranded antiparallel beta-sheet packed against two alpha-helices and an extended strand in a configuration homologous to the C-terminal domain of the TolA protein. Chemical shift perturbations to the TonB-CTD (1)H-(15)N HSCQ spectrum titrated with TonB box peptides modeled from the E.coli FhuA, FepA and BtuB proteins were all equivalent, indicating that all three peptides bind to the same region of TonB. Isothermal titration calorimetry measurements demonstrate that TonB-CTD interacts with the FhuA-derived peptide with a K(D)=36(+/-7) microM. On the basis of chemical shift data, the position of Gln160, and comparison to the TolA gp3 N1 complex crystal structure, we propose that the TonB box binds to TonB-CTD along the beta3-strand.

The solution structure of the C-terminal domain of TonB and interaction studies with TonB box peptides.,Sean Peacock R, Weljie AM, Peter Howard S, Price FD, Vogel HJ J Mol Biol. 2005 Feb 4;345(5):1185-97. Epub 2004 Dec 15. PMID:15644214[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. Sean Peacock R, Weljie AM, Peter Howard S, Price FD, Vogel HJ. The solution structure of the C-terminal domain of TonB and interaction studies with TonB box peptides. J Mol Biol. 2005 Feb 4;345(5):1185-97. Epub 2004 Dec 15. PMID:15644214 doi:10.1016/j.jmb.2004.11.026
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