1nhm: Difference between revisions

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 ==THE STRUCTURE OF THE HMG BOX AND ITS INTERACTION WITH DNA==
-<StructureSection load='1nhm' size='340' side='right' caption='[[1nhm]], [[NMR_Ensembles_of_Models | 1 NMR models]]' scene=''>
+<StructureSection load='1nhm' size='340' side='right'caption='[[1nhm]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1nhm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Cricetulus_griseus Cricetulus griseus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NHM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1NHM FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1nhm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cricetulus_griseus Cricetulus griseus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NHM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NHM FirstGlance]. <br>
-</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1nhn|1nhn]]</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">INSERT DERIVED BY PCR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10029 Cricetulus griseus])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nhm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nhm OCA], [https://pdbe.org/1nhm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nhm RCSB], [https://www.ebi.ac.uk/pdbsum/1nhm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nhm ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1nhm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nhm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1nhm RCSB], [http://www.ebi.ac.uk/pdbsum/1nhm PDBsum]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/HMGB1_CRIGR HMGB1_CRIGR]] DNA binding proteins that associates with chromatin and has the ability to bend DNA. Binds preferentially single-stranded DNA. Involved in V(D)J recombination by acting as a cofactor of the RAG complex. Acts by stimulating cleavage and RAG protein binding at the 23 bp spacer of conserved recombination signal sequences (RSS). Heparin-binding protein that has a role in the extension of neurite-type cytoplasmic processes in developing cells (By similarity).
+[https://www.uniprot.org/uniprot/HMGB1_CRIGR HMGB1_CRIGR] DNA binding proteins that associates with chromatin and has the ability to bend DNA. Binds preferentially single-stranded DNA. Involved in V(D)J recombination by acting as a cofactor of the RAG complex. Acts by stimulating cleavage and RAG protein binding at the 23 bp spacer of conserved recombination signal sequences (RSS). Heparin-binding protein that has a role in the extension of neurite-type cytoplasmic processes in developing cells (By similarity).
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nh/1nhm_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nh/1nhm_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nhm ConSurf].
 <div style="clear:both"></div>
+==See Also==
+*[[High mobility group protein|High mobility group protein]]
 __TOC__
 </StructureSection>
 [[Category: Cricetulus griseus]]
-[[Category: Carillo, M O.M]]
+[[Category: Large Structures]]
-[[Category: Cary, P D]]
+[[Category: Carillo MOM]]
-[[Category: Crane-Robinson, C]]
+[[Category: Cary PD]]
-[[Category: Driscoll, P C]]
+[[Category: Crane-Robinson C]]
-[[Category: Norman, D G]]
+[[Category: Driscoll PC]]
-[[Category: Read, C M]]
+[[Category: Norman DG]]
-[[Category: Dna-binding]]
+[[Category: Read CM]]