2yz8: Difference between revisions

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[[Image:2yz8.png|left|200px]]


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==Crystal structure of the 32th Ig-like domain of human obscurin (KIAA1556)==
The line below this paragraph, containing "STRUCTURE_2yz8", creates the "Structure Box" on the page.
<StructureSection load='2yz8' size='340' side='right'caption='[[2yz8]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2yz8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YZ8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YZ8 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_2yz8| PDB=2yz8 |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yz8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yz8 OCA], [https://pdbe.org/2yz8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yz8 RCSB], [https://www.ebi.ac.uk/pdbsum/2yz8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yz8 ProSAT], [https://www.topsan.org/Proteins/RSGI/2yz8 TOPSAN]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/OBSCN_HUMAN OBSCN_HUMAN] Involved in myofibrillogenesis. Seems to be involved in assembly of myosin into sarcomeric A bands in striated muscle. Isoform 3 together with ANK1 isoform Mu17/Ank1.5 may provide a molecular link between the sarcoplasmic reticulum and myofibrils.<ref>PMID:11448995</ref> <ref>PMID:16205939</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yz/2yz8_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yz8 ConSurf].
<div style="clear:both"></div>


===Crystal structure of the 32th Ig-like domain of human obscurin (KIAA1556)===
==See Also==
 
*[[Obscurin|Obscurin]]
 
== References ==
==About this Structure==
<references/>
2YZ8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YZ8 OCA].
__TOC__
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Chen, L.]]
[[Category: Chen L]]
[[Category: Chrzas, J.]]
[[Category: Chrzas J]]
[[Category: Fu, Z Q.]]
[[Category: Fu ZQ]]
[[Category: Kishishita, S.]]
[[Category: Kishishita S]]
[[Category: Nishino, A.]]
[[Category: Nishino A]]
[[Category: Ohsawa, N.]]
[[Category: Ohsawa N]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: Saijo S]]
[[Category: Saijo, S.]]
[[Category: Shirouzu M]]
[[Category: Shirouzu, M.]]
[[Category: Wang BC]]
[[Category: Wang, B C.]]
[[Category: Yokoyama S]]
[[Category: Yokoyama, S.]]
[[Category: Z-disk]]
[[Category: Ig fold]]
[[Category: Kiaa1556]]
[[Category: National project on protein structural and functional analyse]]
[[Category: Nppsfa]]
[[Category: Obsucurin]]
[[Category: Riken structural genomics/proteomics initiative]]
[[Category: Rsgi]]
[[Category: Structural genomic]]
[[Category: Structural protein]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 20:29:28 2008''

Latest revision as of 09:33, 3 April 2024

Crystal structure of the 32th Ig-like domain of human obscurin (KIAA1556)Crystal structure of the 32th Ig-like domain of human obscurin (KIAA1556)

Structural highlights

2yz8 is a 1 chain structure with sequence from Homo sapiens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

OBSCN_HUMAN Involved in myofibrillogenesis. Seems to be involved in assembly of myosin into sarcomeric A bands in striated muscle. Isoform 3 together with ANK1 isoform Mu17/Ank1.5 may provide a molecular link between the sarcoplasmic reticulum and myofibrils.[1] [2]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

References

  1. ↑ Young P, Ehler E, Gautel M. Obscurin, a giant sarcomeric Rho guanine nucleotide exchange factor protein involved in sarcomere assembly. J Cell Biol. 2001 Jul 9;154(1):123-36. PMID:11448995
  2. ↑ Borisov AB, Sutter SB, Kontrogianni-Konstantopoulos A, Bloch RJ, Westfall MV, Russell MW. Essential role of obscurin in cardiac myofibrillogenesis and hypertrophic response: evidence from small interfering RNA-mediated gene silencing. Histochem Cell Biol. 2006 Mar;125(3):227-38. Epub 2005 Oct 5. PMID:16205939 doi:http://dx.doi.org/10.1007/s00418-005-0069-x

2yz8, resolution 2.00Å

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OCA
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