4gon: Difference between revisions

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 ==Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Indole Aza-SAM==
-<StructureSection load='4gon' size='340' side='right' caption='[[4gon]], [[Resolution|resolution]] 2.72&Aring;' scene=''>
+<StructureSection load='4gon' size='340' side='right'caption='[[4gon]], [[Resolution|resolution]] 2.72&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4gon]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GON OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4GON FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4gon]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GON OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4GON FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=0Y1:5-{[(3S)-3-AMINO-3-CARBOXYPROPYL][2-(1H-INDOL-3-YL)ETHYL]AMINO}-5-DEOXYADENOSINE'>0Y1</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.72&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4gbe|4gbe]], [[4gol|4gol]], [[4gom|4gom]], [[4goo|4goo]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0Y1:5-{[(3S)-3-AMINO-3-CARBOXYPROPYL][2-(1H-INDOL-3-YL)ETHYL]AMINO}-5-DEOXYADENOSINE'>0Y1</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">b3387, dam, JW3350 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4gon FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gon OCA], [https://pdbe.org/4gon PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4gon RCSB], [https://www.ebi.ac.uk/pdbsum/4gon PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4gon ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Site-specific_DNA-methyltransferase_(adenine-specific) Site-specific DNA-methyltransferase (adenine-specific)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.72 2.1.1.72] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4gon FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gon OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4gon RCSB], [http://www.ebi.ac.uk/pdbsum/4gon PDBsum]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/DMA_ECOLI DMA_ECOLI]] Methylates DNA within the sequence GATC and protects the DNA from cleavage by the restriction endonuclease MboI. Although it shares sequence specificity with a number of type II restriction endonucleases and methylases, it is thought to act in postreplication mismatch repair rather than as a part of a restriction modification system. May also play a role in DNA replication.
+[https://www.uniprot.org/uniprot/DMA_ECOLI DMA_ECOLI] Methylates DNA within the sequence GATC and protects the DNA from cleavage by the restriction endonuclease MboI. Although it shares sequence specificity with a number of type II restriction endonucleases and methylases, it is thought to act in postreplication mismatch repair rather than as a part of a restriction modification system. May also play a role in DNA replication.
+==See Also==
+*[[DNA adenine methylase|DNA adenine methylase]]
+*[[DNA methyltransferase 3D structures|DNA methyltransferase 3D structures]]
 __TOC__
 </StructureSection>
-[[Category: Ecoli]]
+[[Category: Escherichia coli K-12]]
-[[Category: Harmer, J E]]
+[[Category: Large Structures]]
-[[Category: Roach, P L]]
+[[Category: Harmer JE]]
-[[Category: Methylation]]
+[[Category: Roach PL]]
-[[Category: Transferase]]