3hc7: Difference between revisions

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-[[Image:3hc7.png|left|200px]]
-{{STRUCTURE_3hc7|  PDB=3hc7  |  SCENE=  }}
+==Crystal structure of lysin B from Mycobacteriophage D29==
+<StructureSection load='3hc7' size='340' side='right'caption='[[3hc7]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3hc7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_virus_D29 Mycobacterium virus D29]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HC7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HC7 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hc7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hc7 OCA], [https://pdbe.org/3hc7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hc7 RCSB], [https://www.ebi.ac.uk/pdbsum/3hc7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hc7 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/LYSB_BPMD2 LYSB_BPMD2] Endolysin that degrades the junction between mycolic acid and peptidoglycans in the host cell wall and participates with the holin protein in the sequential events which lead to the programmed host cell lysis releasing the mature viral particles. Once the holin has permeabilized the host cell membrane, the endolysin can reach the periplasm and break down the mycolic acid-rich outer membrane. Cleaves the ester linkage joining the mycolic acid-rich outer membrane to arabinogalactan, releasing free mycolic acids.<ref>PMID:19555454</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hc/3hc7_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3hc7 ConSurf].
+<div style="clear:both"></div>
-===Crystal structure of lysin B from Mycobacteriophage D29===
+==See Also==
+*[[Lysin 3D structures|Lysin 3D structures]]
-{{ABSTRACT_PUBMED_19555454}}
+== References ==
+<references/>
-==About this Structure==
+__TOC__
-[[3hc7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_phage_d29 Mycobacterium phage d29]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HC7 OCA].
+</StructureSection>
+[[Category: Large Structures]]
-==Reference==
+[[Category: Mycobacterium virus D29]]
-<ref group="xtra">PMID:019555454</ref><references group="xtra"/>
+[[Category: Sacchettini JC]]
-[[Category: Mycobacterium phage d29]]
+[[Category: Sun Q]]
-[[Category: Sacchettini, J C.]]
-[[Category: Sun, Q.]]
-[[Category: Alpha/beta sandwich]]
-[[Category: Cell adhesion]]