3e3m: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
No edit summary |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
==Crystal structure of a LacI family transcriptional regulator from Silicibacter pomeroyi== | ==Crystal structure of a LacI family transcriptional regulator from Silicibacter pomeroyi== | ||
<StructureSection load='3e3m' size='340' side='right' caption='[[3e3m]], [[Resolution|resolution]] 1.60Å' scene=''> | <StructureSection load='3e3m' size='340' side='right'caption='[[3e3m]], [[Resolution|resolution]] 1.60Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3e3m]] is a 4 chain structure with sequence from [ | <table><tr><td colspan='2'>[[3e3m]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruegeria_pomeroyi Ruegeria pomeroyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E3M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E3M FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6Å</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e3m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e3m OCA], [https://pdbe.org/3e3m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e3m RCSB], [https://www.ebi.ac.uk/pdbsum/3e3m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e3m ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3e3m TOPSAN]</span></td></tr> | ||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/Q5LKY7_RUEPO Q5LKY7_RUEPO] | |||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e3/3e3m_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e3/3e3m_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
| Line 16: | Line 19: | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3e3m ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3e3m ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
==See Also== | |||
*[[Transcriptional activator 3D structures|Transcriptional activator 3D structures]] | |||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: Almo | [[Category: Ruegeria pomeroyi]] | ||
[[Category: Bain | [[Category: Almo SC]] | ||
[[Category: Bonanno | [[Category: Bain KT]] | ||
[[Category: Burley | [[Category: Bonanno JB]] | ||
[[Category: Freeman | [[Category: Burley SK]] | ||
[[Category: Iizuka | [[Category: Freeman J]] | ||
[[Category: Iizuka M]] | |||
[[Category: Ozyurt | [[Category: Ozyurt S]] | ||
[[Category: Sauder | [[Category: Sauder JM]] | ||
[[Category: Smith | [[Category: Smith D]] | ||
[[Category: Wasserman | [[Category: Wasserman S]] | ||
Latest revision as of 12:44, 21 February 2024
Crystal structure of a LacI family transcriptional regulator from Silicibacter pomeroyiCrystal structure of a LacI family transcriptional regulator from Silicibacter pomeroyi
Structural highlights
FunctionEvolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. See Also |
| ||||||||||||||||